Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47041 * 2 1 4 4 C 1.52995 * 109.47082 * 119.99427 * 2 1 3 5 5 C 1.50698 * 109.47473 * 296.78462 * 4 2 1 6 6 H 1.07997 * 120.00148 * 4.29107 * 5 4 2 7 7 C 1.37879 * 120.00135 * 184.29010 * 5 4 2 8 8 N 1.31524 * 119.99466 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47133 * 120.00292 * 9 7 5 12 12 H 1.48508 * 109.47121 * 239.99711 * 9 7 5 13 13 N 1.46898 * 109.47357 * 240.00191 * 2 1 3 14 14 C 1.46953 * 111.00020 * 62.09122 * 13 2 1 15 15 C 1.53055 * 109.36135 * 183.19071 * 14 13 2 16 16 N 1.46958 * 109.36430 * 301.59866 * 15 14 13 17 17 C 1.46906 * 110.99836 * 183.19031 * 16 15 14 18 18 C 1.50699 * 109.47099 * 170.00466 * 17 16 15 19 19 C 1.38704 * 120.39857 * 269.72286 * 18 17 16 20 20 C 1.38573 * 118.43628 * 179.73454 * 19 18 17 21 21 C 1.38396 * 119.14447 * 0.53848 * 20 19 18 22 22 Cl 1.73603 * 119.63581 * 179.70183 * 21 20 19 23 23 N 1.31951 * 120.73350 * 359.72047 * 21 20 19 24 24 C 1.31908 * 121.70430 * 0.02562 * 23 21 20 25 25 C 1.46958 * 110.87651 * 59.32730 * 16 15 14 26 26 C 1.46957 * 111.00083 * 185.89861 * 13 2 1 27 27 H 1.08998 * 109.47253 * 300.00021 * 1 2 3 28 28 H 1.08996 * 109.46966 * 60.00117 * 1 2 3 29 29 H 1.08995 * 109.46592 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46741 * 56.78767 * 4 2 1 31 31 H 1.09004 * 109.46902 * 176.78366 * 4 2 1 32 32 H 0.97004 * 119.99334 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.49077 * 63.22974 * 14 13 2 34 34 H 1.08995 * 109.51448 * 303.17046 * 14 13 2 35 35 H 1.09004 * 109.48652 * 181.63330 * 15 14 13 36 36 H 1.08997 * 109.50621 * 61.58221 * 15 14 13 37 37 H 1.09005 * 109.46931 * 290.00658 * 17 16 15 38 38 H 1.08993 * 109.46997 * 49.99917 * 17 16 15 39 39 H 1.08000 * 120.78804 * 359.97438 * 19 18 17 40 40 H 1.07994 * 120.43165 * 180.23651 * 20 19 18 41 41 H 1.08002 * 119.60755 * 179.97438 * 24 23 21 42 42 H 1.08996 * 109.49232 * 60.64095 * 25 16 15 43 43 H 1.09002 * 109.48267 * 180.70888 * 25 16 15 44 44 H 1.09005 * 109.48236 * 296.77360 * 26 13 2 45 45 H 1.09000 * 109.48979 * 56.81722 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6039 0.0339 2.4784 6 1 0.9635 0.8982 2.3823 7 6 2.0223 -0.3788 3.7256 8 7 2.8026 -1.4311 3.8425 9 14 1.4811 0.5566 5.2492 10 1 0.6133 1.6935 4.8499 11 1 0.7242 -0.3535 6.1460 12 1 2.6762 1.0737 5.9632 13 7 2.0198 -0.6924 -1.1994 14 6 1.5899 0.0022 -2.4210 15 6 2.0513 -0.7919 -3.6454 16 7 3.5135 -0.9347 -3.6109 17 6 4.0032 -1.6272 -4.8104 18 6 5.5067 -1.5397 -4.8623 19 6 6.1263 -0.4829 -5.5127 20 6 7.5113 -0.4399 -5.5307 21 6 8.2251 -1.4519 -4.9131 22 17 9.9606 -1.4148 -4.9346 23 7 7.6013 -2.4450 -4.3082 24 6 6.2846 -2.5143 -4.2678 25 6 3.9432 -1.6294 -2.3893 26 6 3.4820 -0.8353 -1.1650 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.6304 -1.7308 1.2786 31 1 3.1285 -0.7713 1.2209 32 1 3.0973 -1.7212 4.7200 33 1 2.0306 0.9988 -2.4468 34 1 0.5031 0.0849 -2.4295 35 1 1.7587 -0.2635 -4.5528 36 1 1.5891 -1.7789 -3.6343 37 1 3.7011 -2.6739 -4.7744 38 1 3.5810 -1.1576 -5.6988 39 1 5.5432 0.2904 -5.9905 40 1 8.0270 0.3703 -6.0246 41 1 5.8092 -3.3427 -3.7637 42 1 3.5025 -2.6260 -2.3636 43 1 5.0301 -1.7117 -2.3811 44 1 3.9441 0.1518 -1.1764 45 1 3.7745 -1.3633 -0.2573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299391114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = 17.979958 kcal Electronic energy + Delta-G solvation = -24932.179843 eV Core-core repulsion = 21395.441084 eV Total energy + Delta-G solvation = -3536.738759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46933 -40.30643 -37.90166 -37.42510 -35.18357 -33.96950 -33.04580 -32.16573 -31.68199 -28.91340 -28.10996 -25.92168 -25.01182 -24.85741 -23.89049 -22.62938 -21.23473 -20.54508 -18.70994 -18.42385 -17.76724 -17.27919 -16.66477 -16.50919 -15.94608 -15.76969 -15.70805 -15.43650 -15.26676 -15.13854 -14.81381 -14.21528 -14.18694 -14.06949 -13.61982 -13.37551 -13.10322 -12.96615 -12.77663 -12.72020 -12.60434 -12.49821 -12.35689 -12.28088 -12.16451 -12.00664 -11.72588 -11.60488 -11.12708 -10.91787 -10.89740 -10.62728 -10.52195 -9.93073 -9.35292 -9.13626 -8.18697 -6.27968 -0.15574 0.18364 0.79583 1.39329 1.39768 1.52510 2.40346 2.48787 3.03629 3.09091 3.15377 3.44570 3.66194 3.85556 3.92209 3.96468 4.06894 4.12922 4.21435 4.28599 4.35382 4.50105 4.53796 4.59153 4.62090 4.67340 4.72407 4.77252 4.86496 4.89875 4.96373 4.98607 5.09915 5.15749 5.21822 5.24097 5.41899 5.49353 5.50244 5.70533 5.79067 5.96969 6.02879 6.16416 6.36745 6.39320 6.66605 6.88327 7.40289 8.93606 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.002658 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.211776 B =10530.881363 C =11954.886999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.095 3.905 3 H 0.015 0.985 4 C 0.040 3.960 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.541 5.541 14 C 0.051 3.949 15 C 0.067 3.933 16 N -0.541 5.541 17 C 0.101 3.899 18 C -0.123 4.123 19 C -0.038 4.038 20 C -0.151 4.151 21 C 0.150 3.850 22 Cl -0.040 7.040 23 N -0.510 5.510 24 C 0.111 3.889 25 C 0.070 3.930 26 C 0.060 3.940 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.048 0.952 30 H -0.011 1.011 31 H -0.006 1.006 32 H 0.262 0.738 33 H 0.029 0.971 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.020 0.980 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 2.200 -25.141 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.013 4.013 3 H 0.033 0.967 4 C 0.002 3.998 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.267 5.267 14 C -0.077 4.077 15 C -0.061 4.061 16 N -0.266 5.266 17 C -0.027 4.027 18 C -0.125 4.125 19 C -0.064 4.064 20 C -0.172 4.172 21 C -0.014 4.014 22 Cl -0.012 7.012 23 N -0.221 5.221 24 C -0.046 4.046 25 C -0.058 4.058 26 C -0.068 4.068 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.193 0.807 40 H 0.187 0.813 41 H 0.184 0.816 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.038 0.962 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.932 1.450 -24.631 25.162 hybrid contribution 0.055 0.622 1.249 1.396 sum 4.986 2.073 -23.383 23.998 Atomic orbital electron populations 1.21647 0.93529 1.01461 1.01160 1.21527 0.96289 0.93928 0.89509 0.96683 1.19021 0.94573 0.94502 0.91667 1.21640 1.30057 1.13052 0.92175 0.91970 1.25931 0.95199 0.96046 1.02607 1.70122 1.36221 1.26534 1.24458 0.85453 0.78158 0.78796 0.78975 1.18435 1.20469 1.20704 1.62238 1.10578 1.51334 1.02525 1.22306 1.00988 0.95341 0.89034 1.22185 0.86002 0.99753 0.98131 1.62185 1.12307 1.50636 1.01429 1.21031 0.88838 0.98727 0.94072 1.20993 0.97635 0.95621 0.98281 1.21854 0.93299 0.96664 0.94626 1.22146 0.95013 0.99162 1.00832 1.21945 0.87440 0.93746 0.98241 1.98398 1.07820 1.97911 1.97061 1.66948 1.12313 1.25082 1.17805 1.22820 0.87113 0.98838 0.95818 1.22044 0.99702 0.95333 0.88735 1.22047 0.88261 0.98443 0.98074 0.92928 0.91354 0.93305 0.99246 0.98761 0.92960 0.95293 0.88968 0.87193 0.93835 0.92448 0.86518 0.80678 0.81349 0.81649 0.93961 0.90718 0.96211 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 8.81 71.98 0.63 -3.77 16 2 C 0.10 3.99 2.12 44.92 0.10 4.08 16 3 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 4 C 0.04 2.11 4.16 29.85 0.12 2.24 16 5 C -0.53 -30.05 8.47 25.60 0.22 -29.83 16 6 H 0.06 3.37 6.78 -2.91 -0.02 3.35 16 7 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 8 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 9 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.54 -19.16 4.58 -870.47 -3.98 -23.14 16 14 C 0.05 1.34 5.36 86.31 0.46 1.81 16 15 C 0.07 1.30 5.61 86.31 0.48 1.78 16 16 N -0.54 -11.16 4.70 -900.25 -4.23 -15.39 16 17 C 0.10 1.41 5.14 85.56 0.44 1.85 16 18 C -0.12 -2.01 4.90 -19.78 -0.10 -2.11 16 19 C -0.04 -0.52 9.86 22.46 0.22 -0.30 16 20 C -0.15 -2.35 9.88 22.39 0.22 -2.13 16 21 C 0.15 3.23 7.27 84.71 0.62 3.84 16 22 Cl -0.04 -0.82 29.11 -2.72 -0.08 -0.90 16 23 N -0.51 -12.60 10.34 -186.69 -1.93 -14.53 16 24 C 0.11 2.29 9.10 84.66 0.77 3.06 16 25 C 0.07 1.89 5.27 86.31 0.45 2.35 16 26 C 0.06 2.16 5.18 86.31 0.45 2.61 16 27 H 0.05 2.05 6.74 -2.39 -0.02 2.03 16 28 H 0.07 1.98 6.38 -2.39 -0.02 1.97 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 31 H -0.01 -0.34 6.07 -2.38 -0.01 -0.35 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 2.19 6.20 -2.39 -0.01 2.17 16 35 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.77 8.07 -2.38 -0.02 0.75 16 38 H 0.12 1.01 7.98 -2.39 -0.02 0.99 16 39 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.17 3.05 8.00 -2.91 -0.02 3.03 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.99 5.96 -2.39 -0.01 1.98 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.06 2.47 5.96 -2.39 -0.01 2.45 16 Total: -1.00 -69.47 367.08 -1.38 -70.86 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.98 Total: 7.63 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 5.55 Total: -14.08 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -9.86 Total: -110.12 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -69.47 -1.38 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299391114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.838 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds