Wall clock time and date at job start Tue Mar 31 2020 14:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.50890 * 2 1 4 4 C 1.53237 * 109.49206 * 120.06299 * 2 1 3 5 5 N 1.47085 * 108.67786 * 173.88985 * 4 2 1 6 6 C 1.37342 * 120.88008 * 128.74421 * 5 4 2 7 7 O 1.35094 * 119.99997 * 359.97438 * 6 5 4 8 8 N 1.30095 * 120.00057 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00058 * 185.34619 * 8 6 5 10 10 C 1.52996 * 109.47507 * 114.76434 * 9 8 6 11 11 C 1.50702 * 109.47653 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99306 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00192 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99608 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47100 * 59.99702 * 15 13 11 17 17 H 1.48503 * 109.46811 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46947 * 299.99560 * 15 13 11 19 19 C 1.47073 * 118.24170 * 308.71785 * 5 4 2 20 20 C 1.53246 * 108.52011 * 51.18579 * 19 5 4 21 21 N 1.46901 * 109.33873 * 306.17075 * 20 19 5 22 22 C 1.46895 * 111.00010 * 187.24922 * 21 20 19 23 23 C 1.53005 * 109.47129 * 76.71924 * 22 21 20 24 24 F 1.39905 * 109.47026 * 53.86735 * 23 22 21 25 25 F 1.39902 * 109.47394 * 173.86884 * 23 22 21 26 26 F 1.39900 * 109.46927 * 293.87434 * 23 22 21 27 27 H 1.09003 * 109.47021 * 292.10101 * 1 2 3 28 28 H 1.09001 * 109.47205 * 52.10439 * 1 2 3 29 29 H 1.08997 * 109.46771 * 172.10206 * 1 2 3 30 30 H 1.08995 * 109.62641 * 54.08808 * 4 2 1 31 31 H 1.08997 * 109.63061 * 293.69755 * 4 2 1 32 32 H 0.96700 * 114.00320 * 84.98859 * 7 6 5 33 33 H 1.09005 * 109.46872 * 234.76409 * 9 8 6 34 34 H 1.08995 * 109.47329 * 354.76102 * 9 8 6 35 35 H 1.09005 * 109.47034 * 299.99876 * 10 9 8 36 36 H 1.09000 * 109.47495 * 59.99780 * 10 9 8 37 37 H 0.96999 * 119.99993 * 179.97438 * 14 13 11 38 38 H 1.08991 * 109.63414 * 170.89533 * 19 5 4 39 39 H 1.09007 * 109.63122 * 291.28492 * 19 5 4 40 40 H 1.09002 * 109.49155 * 66.12970 * 20 19 5 41 41 H 1.09001 * 109.49612 * 186.21446 * 20 19 5 42 42 H 1.08999 * 109.47537 * 196.71907 * 22 21 20 43 43 H 1.09005 * 109.47723 * 316.72151 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7236 1.2502 5 7 3.5046 -0.8429 1.1601 6 6 4.3098 -0.4400 2.1972 7 8 3.7599 0.0743 3.3189 8 7 5.6021 -0.5528 2.0990 9 6 6.4546 -0.2336 3.2469 10 6 7.1636 -1.5026 3.7242 11 6 8.0401 -1.1745 4.9054 12 1 8.0870 -0.1619 5.2781 13 6 8.7828 -2.1667 5.5095 14 7 8.7260 -3.3995 5.0553 15 14 9.8697 -1.7596 6.9733 16 1 9.0343 -1.2160 8.0741 17 1 10.5577 -2.9914 7.4365 18 1 10.8805 -0.7481 6.5730 19 6 4.0826 -1.4054 -0.0697 20 6 3.4946 -0.6567 -1.2706 21 7 2.0279 -0.6972 -1.1985 22 6 1.4254 -0.1411 -2.4174 23 6 1.5249 -1.1662 -3.5489 24 9 0.9670 -2.3789 -3.1300 25 9 0.8296 -0.6949 -4.6677 26 9 2.8690 -1.3623 -3.8836 27 1 -0.3633 0.3867 0.9522 28 1 -0.3634 0.6312 -0.8110 29 1 -0.3633 -1.0179 -0.1412 30 1 1.5958 -1.7168 1.3063 31 1 1.7746 -0.1519 2.1391 32 1 3.4848 -0.5921 3.9633 33 1 7.1968 0.5086 2.9531 34 1 5.8416 0.1657 4.0549 35 1 6.4214 -2.2449 4.0181 36 1 7.7767 -1.9020 2.9163 37 1 9.2488 -4.0974 5.4801 38 1 5.1653 -1.2816 -0.0555 39 1 3.8361 -2.4650 -0.1388 40 1 3.8312 0.3799 -1.2533 41 1 3.8266 -1.1320 -2.1937 42 1 0.3774 0.0931 -2.2305 43 1 1.9554 0.7676 -2.7028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330813465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:09 Heat of formation + Delta-G solvation = -155.770396 kcal Electronic energy + Delta-G solvation = -28209.518542 eV Core-core repulsion = 23682.679496 eV Total energy + Delta-G solvation = -4526.839045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.32999 -47.91206 -47.73389 -39.98112 -38.37339 -35.16958 -34.31905 -33.07915 -32.41329 -30.42759 -29.13923 -27.57856 -26.12173 -24.29880 -23.16182 -22.94309 -21.17701 -20.28406 -19.65139 -18.78353 -18.71869 -17.80953 -17.71251 -16.51035 -16.13632 -15.83082 -15.61924 -15.19150 -14.91602 -14.59973 -14.49007 -14.45535 -14.42260 -14.18045 -14.02678 -13.93786 -13.82165 -13.45080 -13.02921 -12.49040 -12.42374 -12.22805 -12.19374 -12.05554 -11.74938 -11.50738 -11.37046 -11.25027 -10.99884 -10.87380 -10.72054 -10.31286 -10.00513 -9.49503 -9.19890 -8.95191 -8.67249 -8.30798 -7.45004 -5.97686 -4.00791 2.38735 2.66715 2.97773 3.17670 3.34576 3.38676 3.41502 3.54392 3.71316 4.10180 4.38043 4.42467 4.48112 4.56215 4.70549 4.75727 4.85617 5.01161 5.09984 5.18003 5.33002 5.33661 5.37601 5.45565 5.61018 5.63397 5.77012 5.90757 6.09152 6.31995 6.47495 6.51725 6.73110 6.85787 7.05687 7.34264 7.72107 7.79575 7.93968 8.04361 8.43111 8.84460 9.06944 9.62843 11.13489 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.002404 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.223613 B =11644.638586 C =12274.291241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 H 0.053 0.947 4 C 0.135 3.865 5 N -0.615 5.615 6 C 0.526 3.474 7 O -0.529 6.529 8 N -0.579 5.579 9 C 0.069 3.931 10 C 0.034 3.966 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.144 3.856 20 C 0.022 3.978 21 N -0.527 5.527 22 C 0.000 4.000 23 C 0.458 3.542 24 F -0.172 7.172 25 F -0.187 7.187 26 F -0.182 7.182 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.009 0.991 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.460 6.449 -16.251 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.038 4.038 3 H 0.071 0.929 4 C 0.011 3.989 5 N -0.346 5.346 6 C 0.212 3.788 7 O -0.331 6.331 8 N -0.319 5.319 9 C -0.060 4.060 10 C -0.004 4.004 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.022 3.978 20 C -0.106 4.106 21 N -0.253 5.253 22 C -0.130 4.130 23 C 0.403 3.597 24 F -0.153 7.153 25 F -0.169 7.169 26 F -0.163 7.163 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.254 0.746 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.142 0.858 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.797 6.113 -16.901 27.487 hybrid contribution 0.368 0.666 1.487 1.670 sum -20.428 6.778 -15.415 26.474 Atomic orbital electron populations 1.21952 0.93367 1.03221 1.02480 1.22153 0.95601 0.96232 0.89771 0.92868 1.21559 0.79976 1.00744 0.96671 1.46313 1.04044 1.67942 1.16287 1.20251 0.86852 0.90581 0.81117 1.84785 1.82414 1.37780 1.28134 1.72375 1.00510 1.25819 1.33196 1.22049 0.94409 1.00522 0.88973 1.19043 0.94752 0.90966 0.95603 1.21167 1.25832 0.94877 1.14165 0.92723 1.25009 0.96920 0.95026 0.97402 1.69969 1.41412 1.00706 1.41237 0.86637 0.80748 0.77629 0.82852 1.20277 1.21277 1.20182 1.21512 0.99920 0.96323 0.80089 1.23041 0.85548 1.00806 1.01236 1.61949 1.07885 1.55017 1.00403 1.23340 1.05302 0.94381 0.89946 1.20520 0.73489 0.82605 0.83071 1.93209 1.85058 1.47195 1.89842 1.93183 1.79588 1.88419 1.55666 1.93118 1.34314 1.95714 1.93192 0.91043 0.92281 0.90876 0.91020 0.89244 0.74617 0.91844 0.94567 0.97257 0.95948 0.92941 0.87291 0.91310 0.93585 0.88096 0.85846 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.56 37.16 0.32 -0.51 16 2 C 0.07 0.56 2.62 -67.35 -0.18 0.39 16 3 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.13 1.29 5.90 -3.60 -0.02 1.27 16 5 N -0.61 -8.10 3.08 -175.06 -0.54 -8.64 16 6 C 0.53 8.75 8.36 -88.57 -0.74 8.01 16 7 O -0.53 -7.91 10.71 -16.98 -0.18 -8.09 16 8 N -0.58 -11.77 9.16 -62.53 -0.57 -12.35 16 9 C 0.07 1.59 6.28 -4.04 -0.03 1.57 16 10 C 0.03 0.93 5.30 -27.88 -0.15 0.78 16 11 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.14 1.82 6.61 -3.60 -0.02 1.80 16 20 C 0.02 0.22 5.40 -3.70 -0.02 0.20 16 21 N -0.53 -4.53 4.23 -226.00 -0.96 -5.49 16 22 C 0.00 0.00 4.94 -3.82 -0.02 -0.02 16 23 C 0.46 3.85 3.27 37.16 0.12 3.97 16 24 F -0.17 -1.71 17.13 2.25 0.04 -1.67 16 25 F -0.19 -1.58 17.32 2.25 0.04 -1.54 16 26 F -0.18 -1.75 14.66 2.25 0.03 -1.72 16 27 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.06 0.25 6.41 -51.93 -0.33 -0.08 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.80 7.03 -51.93 -0.37 0.43 16 32 H 0.40 4.54 9.06 45.56 0.41 4.95 16 33 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.04 0.80 6.74 -51.93 -0.35 0.46 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.11 1.61 6.97 -51.93 -0.36 1.25 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.98 5.43 -51.93 -0.28 0.70 16 42 H 0.12 0.60 5.37 -51.93 -0.28 0.33 16 43 H 0.08 0.48 7.99 -51.93 -0.41 0.06 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -33.60 356.56 -7.51 -41.12 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.32 Total: -0.82 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.15 Total: 3.58 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -1.33 Total: -53.15 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.18 Total: -8.09 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.11 Total: -4.93 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.60 -7.51 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330813465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.653 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds