Wall clock time and date at job start Tue Mar 31 2020 14:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.50890 * 2 1 4 4 C 1.53237 * 109.49206 * 120.06299 * 2 1 3 5 5 N 1.47085 * 108.67786 * 173.88985 * 4 2 1 6 6 C 1.37342 * 120.88008 * 128.74421 * 5 4 2 7 7 O 1.35094 * 119.99997 * 359.97438 * 6 5 4 8 8 N 1.30095 * 120.00057 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00058 * 185.34619 * 8 6 5 10 10 C 1.52996 * 109.47507 * 114.76434 * 9 8 6 11 11 C 1.50702 * 109.47653 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99306 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00192 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99608 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47100 * 59.99702 * 15 13 11 17 17 H 1.48503 * 109.46811 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46947 * 299.99560 * 15 13 11 19 19 C 1.47073 * 118.24170 * 308.71785 * 5 4 2 20 20 C 1.53246 * 108.52011 * 51.18579 * 19 5 4 21 21 N 1.46901 * 109.33873 * 306.17075 * 20 19 5 22 22 C 1.46895 * 111.00010 * 187.24922 * 21 20 19 23 23 C 1.53005 * 109.47129 * 76.71924 * 22 21 20 24 24 F 1.39905 * 109.47026 * 53.86735 * 23 22 21 25 25 F 1.39902 * 109.47394 * 173.86884 * 23 22 21 26 26 F 1.39900 * 109.46927 * 293.87434 * 23 22 21 27 27 H 1.09003 * 109.47021 * 292.10101 * 1 2 3 28 28 H 1.09001 * 109.47205 * 52.10439 * 1 2 3 29 29 H 1.08997 * 109.46771 * 172.10206 * 1 2 3 30 30 H 1.08995 * 109.62641 * 54.08808 * 4 2 1 31 31 H 1.08997 * 109.63061 * 293.69755 * 4 2 1 32 32 H 0.96700 * 114.00320 * 84.98859 * 7 6 5 33 33 H 1.09005 * 109.46872 * 234.76409 * 9 8 6 34 34 H 1.08995 * 109.47329 * 354.76102 * 9 8 6 35 35 H 1.09005 * 109.47034 * 299.99876 * 10 9 8 36 36 H 1.09000 * 109.47495 * 59.99780 * 10 9 8 37 37 H 0.96999 * 119.99993 * 179.97438 * 14 13 11 38 38 H 1.08991 * 109.63414 * 170.89533 * 19 5 4 39 39 H 1.09007 * 109.63122 * 291.28492 * 19 5 4 40 40 H 1.09002 * 109.49155 * 66.12970 * 20 19 5 41 41 H 1.09001 * 109.49612 * 186.21446 * 20 19 5 42 42 H 1.08999 * 109.47537 * 196.71907 * 22 21 20 43 43 H 1.09005 * 109.47723 * 316.72151 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7236 1.2502 5 7 3.5046 -0.8429 1.1601 6 6 4.3098 -0.4400 2.1972 7 8 3.7599 0.0743 3.3189 8 7 5.6021 -0.5528 2.0990 9 6 6.4546 -0.2336 3.2469 10 6 7.1636 -1.5026 3.7242 11 6 8.0401 -1.1745 4.9054 12 1 8.0870 -0.1619 5.2781 13 6 8.7828 -2.1667 5.5095 14 7 8.7260 -3.3995 5.0553 15 14 9.8697 -1.7596 6.9733 16 1 9.0343 -1.2160 8.0741 17 1 10.5577 -2.9914 7.4365 18 1 10.8805 -0.7481 6.5730 19 6 4.0826 -1.4054 -0.0697 20 6 3.4946 -0.6567 -1.2706 21 7 2.0279 -0.6972 -1.1985 22 6 1.4254 -0.1411 -2.4174 23 6 1.5249 -1.1662 -3.5489 24 9 0.9670 -2.3789 -3.1300 25 9 0.8296 -0.6949 -4.6677 26 9 2.8690 -1.3623 -3.8836 27 1 -0.3633 0.3867 0.9522 28 1 -0.3634 0.6312 -0.8110 29 1 -0.3633 -1.0179 -0.1412 30 1 1.5958 -1.7168 1.3063 31 1 1.7746 -0.1519 2.1391 32 1 3.4848 -0.5921 3.9633 33 1 7.1968 0.5086 2.9531 34 1 5.8416 0.1657 4.0549 35 1 6.4214 -2.2449 4.0181 36 1 7.7767 -1.9020 2.9163 37 1 9.2488 -4.0974 5.4801 38 1 5.1653 -1.2816 -0.0555 39 1 3.8361 -2.4650 -0.1388 40 1 3.8312 0.3799 -1.2533 41 1 3.8266 -1.1320 -2.1937 42 1 0.3774 0.0931 -2.2305 43 1 1.9554 0.7676 -2.7028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330813465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:08 Heat of formation + Delta-G solvation = -181.892922 kcal Electronic energy + Delta-G solvation = -28210.651299 eV Core-core repulsion = 23682.679496 eV Total energy + Delta-G solvation = -4527.971803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.01716 -48.59945 -48.44474 -40.95918 -39.46803 -36.18310 -36.14112 -34.50109 -33.65176 -31.62812 -30.61475 -28.28070 -27.42295 -25.90118 -24.07488 -23.78999 -22.70791 -21.47992 -20.74374 -19.47287 -19.45164 -18.91637 -18.59864 -18.41215 -17.25961 -16.95482 -16.66039 -16.52497 -15.96575 -15.71811 -15.54043 -15.30052 -15.18794 -14.99348 -14.86506 -14.83704 -14.65771 -14.55888 -14.29678 -14.11992 -13.70924 -13.15262 -13.05467 -13.00316 -12.87083 -12.76166 -12.67021 -12.57116 -12.14634 -12.11582 -11.96130 -11.94736 -11.81015 -11.36071 -11.12861 -10.59937 -10.20264 -9.67579 -8.77516 -8.20771 -6.34374 1.35842 1.40480 1.43768 1.52037 1.74157 1.83977 2.40486 2.46053 2.92331 3.10478 3.11135 3.32017 3.44291 3.68535 3.87523 3.93375 4.09377 4.21079 4.23980 4.29506 4.33765 4.48531 4.56191 4.65732 4.79161 4.80776 4.84252 4.95223 5.00776 5.06742 5.08900 5.34054 5.44387 5.61149 5.65711 5.72522 5.80351 5.88531 6.14516 6.23999 6.62710 6.81338 7.34464 7.46826 8.90702 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.002404 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.223613 B =11644.638586 C =12274.291241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 H 0.049 0.951 4 C 0.128 3.872 5 N -0.607 5.607 6 C 0.546 3.454 7 O -0.530 6.530 8 N -0.628 5.628 9 C 0.092 3.908 10 C 0.046 3.954 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.263 1.263 17 H -0.281 1.281 18 H -0.267 1.267 19 C 0.141 3.859 20 C 0.034 3.966 21 N -0.535 5.535 22 C 0.006 3.994 23 C 0.456 3.544 24 F -0.182 7.182 25 F -0.187 7.187 26 F -0.192 7.192 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.414 0.586 33 H 0.052 0.948 34 H 0.040 0.960 35 H -0.017 1.017 36 H -0.015 1.015 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.104 0.896 42 H 0.148 0.852 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.352 7.782 -15.886 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 H 0.067 0.933 4 C 0.006 3.994 5 N -0.337 5.337 6 C 0.232 3.768 7 O -0.335 6.335 8 N -0.371 5.371 9 C -0.038 4.038 10 C 0.008 3.992 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.794 3.206 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.192 1.192 19 C 0.018 3.982 20 C -0.094 4.094 21 N -0.260 5.260 22 C -0.124 4.124 23 C 0.401 3.599 24 F -0.164 7.164 25 F -0.168 7.168 26 F -0.174 7.174 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.275 0.725 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.166 0.834 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.765 7.448 -16.557 29.118 hybrid contribution 0.787 0.205 1.284 1.520 sum -21.978 7.653 -15.273 27.836 Atomic orbital electron populations 1.21932 0.90889 1.03676 1.03900 1.22146 0.97369 0.95353 0.88418 0.93313 1.21889 0.77320 1.01849 0.98386 1.46610 1.05469 1.66228 1.15411 1.20367 0.86579 0.87835 0.81969 1.84715 1.82206 1.38434 1.28130 1.72363 1.02135 1.30590 1.32030 1.21540 0.94576 0.97597 0.90097 1.18842 0.93750 0.92438 0.94153 1.21580 1.26513 0.95414 1.14895 0.92005 1.26033 0.98362 0.94678 1.00701 1.70118 1.42388 1.01919 1.42889 0.85421 0.78670 0.77699 0.78761 1.18808 1.20671 1.19165 1.21506 0.98789 0.96826 0.81043 1.22829 0.86798 1.00017 0.99788 1.61883 1.06696 1.55823 1.01589 1.23426 1.06749 0.93925 0.88265 1.20809 0.72930 0.82594 0.83561 1.93189 1.85173 1.48059 1.89941 1.93182 1.79514 1.88325 1.55810 1.93100 1.35136 1.95793 1.93328 0.89904 0.90553 0.90975 0.90137 0.88114 0.72496 0.92947 0.94161 0.99843 0.99678 0.92661 0.89908 0.91268 0.93982 0.87785 0.83434 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.56 71.98 0.62 -0.44 16 2 C 0.08 1.00 2.62 44.91 0.12 1.11 16 3 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 4 C 0.13 2.19 5.90 86.35 0.51 2.70 16 5 N -0.61 -15.60 3.08 -818.24 -2.52 -18.12 16 6 C 0.55 18.10 8.36 179.63 1.50 19.60 16 7 O -0.53 -15.22 10.71 -83.69 -0.90 -16.11 16 8 N -0.63 -26.37 9.16 -465.99 -4.27 -30.64 16 9 C 0.09 4.35 6.28 86.38 0.54 4.89 16 10 C 0.05 2.63 5.30 29.85 0.16 2.79 16 11 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16 12 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.93 -58.57 13.29 21.45 0.28 -58.29 16 15 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 C 0.14 3.59 6.61 86.35 0.57 4.17 16 20 C 0.03 0.66 5.40 86.39 0.47 1.13 16 21 N -0.53 -8.07 4.23 -868.92 -3.67 -11.74 16 22 C 0.01 0.06 4.94 86.31 0.43 0.49 16 23 C 0.46 6.87 3.27 71.98 0.24 7.11 16 24 F -0.18 -3.36 17.13 44.97 0.77 -2.59 16 25 F -0.19 -2.82 17.32 44.97 0.78 -2.04 16 26 F -0.19 -3.52 14.66 44.97 0.66 -2.86 16 27 H 0.08 0.45 8.13 -2.39 -0.02 0.43 16 28 H 0.08 0.32 6.41 -2.39 -0.02 0.31 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.52 7.03 -2.39 -0.02 1.50 16 32 H 0.41 8.92 9.06 -74.06 -0.67 8.25 16 33 H 0.05 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.04 1.82 6.74 -2.39 -0.02 1.80 16 35 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.08 2.58 6.97 -2.39 -0.02 2.57 16 39 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 1.97 5.43 -2.39 -0.01 1.95 16 42 H 0.15 0.88 5.37 -2.39 -0.01 0.87 16 43 H 0.10 0.83 7.99 -2.38 -0.02 0.81 16 Total: -1.00 -74.64 356.56 -0.63 -75.26 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.37 Total: 8.21 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.84 Total: 11.84 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -10.18 Total: -118.80 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.90 Total: -16.11 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 2.21 Total: -7.49 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.64 -0.63 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330813465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.630 kcal (2) G-P(sol) polarization free energy of solvation -74.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds