Wall clock time and date at job start Tue Mar 31 2020 14:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.48899 * 2 1 4 4 C 1.53236 * 109.49554 * 239.94580 * 2 1 3 5 5 N 1.47079 * 108.52140 * 186.21117 * 4 2 1 6 6 C 1.37342 * 120.87857 * 231.18424 * 5 4 2 7 7 O 1.35087 * 119.99871 * 354.11679 * 6 5 4 8 8 N 1.30100 * 119.99467 * 174.11454 * 6 5 4 9 9 C 1.46508 * 119.99636 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46775 * 115.00323 * 9 8 6 11 11 C 1.50701 * 109.47169 * 179.97438 * 10 9 8 12 12 H 1.08009 * 119.99508 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00426 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00449 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99825 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47250 * 90.00029 * 15 13 11 17 17 H 1.48495 * 109.47099 * 209.99928 * 15 13 11 18 18 H 1.48498 * 109.47311 * 330.00063 * 15 13 11 19 19 C 1.47086 * 118.23816 * 51.45092 * 5 4 2 20 20 C 1.53699 * 108.27642 * 308.48767 * 19 5 4 21 21 N 1.46895 * 109.49187 * 120.07265 * 2 1 3 22 22 C 1.46900 * 111.00520 * 307.21774 * 21 2 1 23 23 C 1.53001 * 109.47601 * 162.89928 * 22 21 2 24 24 F 1.39895 * 109.46951 * 66.22788 * 23 22 21 25 25 F 1.39898 * 109.47054 * 186.23523 * 23 22 21 26 26 F 1.39904 * 109.46678 * 306.23252 * 23 22 21 27 27 H 1.08999 * 109.46880 * 186.51020 * 1 2 3 28 28 H 1.09003 * 109.47473 * 306.51463 * 1 2 3 29 29 H 1.08999 * 109.46728 * 66.51157 * 1 2 3 30 30 H 1.08993 * 109.63092 * 66.49550 * 4 2 1 31 31 H 1.08999 * 109.78382 * 306.01139 * 4 2 1 32 32 H 0.96698 * 114.00846 * 4.70276 * 7 6 5 33 33 H 1.09001 * 109.46685 * 355.00640 * 9 8 6 34 34 H 1.08998 * 109.46867 * 235.00632 * 9 8 6 35 35 H 1.08995 * 109.47166 * 299.99871 * 10 9 8 36 36 H 1.09000 * 109.47390 * 59.99895 * 10 9 8 37 37 H 0.96991 * 119.99885 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.62342 * 68.25585 * 19 5 4 39 39 H 1.09002 * 109.62736 * 188.83308 * 19 5 4 40 40 H 1.08995 * 109.64508 * 294.07687 * 20 19 5 41 41 H 1.09002 * 109.43818 * 173.96063 * 20 19 5 42 42 H 1.09004 * 109.46986 * 282.89835 * 22 21 2 43 43 H 1.09002 * 109.46875 * 42.89023 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7234 -1.2503 5 7 3.5043 -0.8429 -1.1554 6 6 4.3129 -0.4410 -2.1903 7 8 3.7657 -0.0396 -3.3584 8 7 5.6058 -0.4469 -2.0455 9 6 6.4684 -0.0187 -3.1496 10 6 7.2171 1.2537 -2.7479 11 6 8.1049 1.6938 -3.8833 12 1 8.1320 1.1232 -4.8000 13 6 8.8816 2.8253 -3.7524 14 7 9.6560 3.2097 -4.7435 15 14 8.8341 3.8126 -2.1672 16 1 9.8662 3.2974 -1.2321 17 1 9.1057 5.2416 -2.4658 18 1 7.4926 3.6835 -1.5437 19 6 4.0780 -1.4097 0.0746 20 6 3.4866 -0.6536 1.2751 21 7 2.0202 -0.6939 1.1984 22 6 1.4140 -0.1362 2.4147 23 6 1.5963 -1.1197 3.5725 24 9 2.9561 -1.2282 3.8824 25 9 0.8981 -0.6559 4.6926 26 9 1.1011 -2.3743 3.2010 27 1 -0.3633 -1.0210 0.1165 28 1 -0.3634 0.6115 0.8259 29 1 -0.3633 0.4096 -0.9425 30 1 1.7777 -0.1499 -2.1388 31 1 1.5961 -1.7165 -1.3100 32 1 2.7996 -0.0011 -3.3475 33 1 5.8585 0.1814 -4.0306 34 1 7.1866 -0.8067 -3.3762 35 1 6.4989 2.0416 -2.5214 36 1 7.8269 1.0537 -1.8669 37 1 10.2022 4.0060 -4.6514 38 1 3.8244 -2.4676 0.1432 39 1 5.1613 -1.2900 0.0624 40 1 3.8235 0.3828 1.2575 41 1 3.8157 -1.1274 2.2000 42 1 1.8977 0.8089 2.6613 43 1 0.3505 0.0332 2.2458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330813466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:11 Heat of formation + Delta-G solvation = -149.193251 kcal Electronic energy + Delta-G solvation = -28446.351356 eV Core-core repulsion = 23919.797517 eV Total energy + Delta-G solvation = -4526.553839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.42484 -48.00632 -47.82197 -40.28757 -38.53874 -35.25394 -34.56449 -33.18576 -32.41260 -30.55794 -29.56534 -27.70056 -26.37944 -24.31810 -23.28261 -22.98380 -21.08552 -20.18675 -19.96828 -18.89134 -18.86343 -18.35949 -17.84536 -16.83552 -16.22404 -15.85799 -15.52830 -15.28254 -14.84987 -14.72412 -14.62229 -14.58001 -14.26122 -14.10261 -14.04122 -13.95809 -13.69362 -13.60967 -13.35253 -12.98943 -12.65514 -12.60672 -12.44505 -12.28358 -12.11918 -11.61564 -11.57265 -11.35422 -11.20409 -11.07078 -10.40841 -10.20364 -9.70740 -9.62698 -9.18075 -9.03601 -8.71742 -8.44811 -7.56177 -5.97391 -3.94295 2.30204 2.65629 2.99989 3.12391 3.36704 3.42518 3.45179 3.49258 3.63390 3.95477 4.04414 4.22161 4.41963 4.46356 4.52506 4.65738 4.67169 4.83263 4.94339 5.01830 5.14757 5.19369 5.29048 5.37423 5.43891 5.51781 5.61845 5.75764 5.89875 6.17096 6.34848 6.50065 6.55812 6.68432 6.86579 6.98032 7.45585 7.55724 7.86502 8.07336 8.61320 8.72535 9.07819 9.65876 11.16217 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002912 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.727132 B = 9614.477013 C =10410.478306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 H 0.056 0.944 4 C 0.130 3.870 5 N -0.632 5.632 6 C 0.538 3.462 7 O -0.504 6.504 8 N -0.589 5.589 9 C 0.085 3.915 10 C -0.002 4.002 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.906 5.906 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.268 1.268 19 C 0.147 3.853 20 C 0.015 3.985 21 N -0.526 5.526 22 C 0.000 4.000 23 C 0.458 3.542 24 F -0.181 7.181 25 F -0.185 7.185 26 F -0.172 7.172 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.381 0.619 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.009 0.991 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.261 -9.004 16.399 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.038 4.038 3 H 0.074 0.926 4 C 0.006 3.994 5 N -0.364 5.364 6 C 0.225 3.775 7 O -0.298 6.298 8 N -0.336 5.336 9 C -0.044 4.044 10 C -0.040 4.040 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.546 5.546 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.193 1.193 19 C 0.025 3.975 20 C -0.113 4.113 21 N -0.251 5.251 22 C -0.129 4.129 23 C 0.404 3.596 24 F -0.162 7.162 25 F -0.167 7.167 26 F -0.153 7.153 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.108 -9.486 16.546 30.740 hybrid contribution -0.629 1.624 0.429 1.794 sum -24.736 -7.861 16.975 31.014 Atomic orbital electron populations 1.21977 0.93142 1.03372 1.02663 1.22045 0.95797 0.96332 0.89655 0.92600 1.21582 0.80254 1.01127 0.96427 1.46453 1.03786 1.69575 1.16558 1.20722 0.88578 0.89572 0.78609 1.85354 1.26388 1.84696 1.33375 1.72582 0.97290 1.31541 1.32170 1.21655 0.93989 0.98178 0.90583 1.19522 0.95094 0.92200 0.97164 1.21132 1.23045 1.10318 1.00985 0.91037 1.24993 0.94939 0.97191 0.96341 1.69920 1.27532 1.25304 1.31799 0.86738 0.78917 0.79077 0.84300 1.20213 1.21525 1.19263 1.21599 1.00145 0.95948 0.79842 1.23211 0.85463 1.01217 1.01396 1.61854 1.07986 1.54927 1.00382 1.23356 1.05139 0.95044 0.89391 1.20477 0.73649 0.81896 0.83613 1.93100 1.33037 1.96437 1.93645 1.93190 1.79325 1.88650 1.55520 1.93209 1.87332 1.43540 1.91233 0.90806 0.92027 0.91042 0.90284 0.90199 0.76382 0.93932 0.91642 0.97307 0.96585 0.92830 0.91405 0.87056 0.93223 0.87731 0.89918 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.55 37.16 0.32 -0.31 16 2 C 0.07 0.47 2.60 -67.59 -0.18 0.29 16 3 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.13 0.97 5.80 -3.60 -0.02 0.95 16 5 N -0.63 -7.39 3.08 -174.78 -0.54 -7.93 16 6 C 0.54 8.63 8.55 -88.56 -0.76 7.88 16 7 O -0.50 -7.53 11.99 -16.97 -0.20 -7.74 16 8 N -0.59 -11.80 9.17 -62.52 -0.57 -12.37 16 9 C 0.08 1.97 6.27 -4.04 -0.03 1.94 16 10 C 0.00 -0.05 4.36 -27.88 -0.12 -0.17 16 11 C -0.52 -15.66 9.66 -34.44 -0.33 -16.00 16 12 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.91 -28.95 13.96 55.43 0.77 -28.18 16 15 Si 0.88 22.95 27.47 -169.99 -4.67 18.28 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.27 -6.83 6.54 56.52 0.37 -6.46 16 19 C 0.15 1.66 6.66 -3.36 -0.02 1.63 16 20 C 0.02 0.14 5.40 -3.46 -0.02 0.12 16 21 N -0.53 -3.99 4.24 -226.05 -0.96 -4.95 16 22 C 0.00 0.00 4.89 -3.82 -0.02 -0.02 16 23 C 0.46 3.55 3.25 37.16 0.12 3.67 16 24 F -0.18 -1.64 14.45 2.25 0.03 -1.60 16 25 F -0.19 -1.49 17.32 2.25 0.04 -1.45 16 26 F -0.17 -1.55 17.13 2.25 0.04 -1.51 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.21 6.37 -51.93 -0.33 -0.12 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.42 5.71 -51.93 -0.30 0.13 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.38 3.41 6.21 45.56 0.28 3.69 16 33 H 0.04 1.00 6.74 -51.93 -0.35 0.65 16 34 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.01 0.24 7.20 -51.93 -0.37 -0.14 16 36 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.11 1.51 6.96 -51.93 -0.36 1.15 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.95 5.21 -51.93 -0.27 0.68 16 42 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 43 H 0.13 0.52 5.45 -51.93 -0.28 0.24 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -36.00 349.77 -7.28 -43.28 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.34 Total: -3.01 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.15 Total: 1.92 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -1.30 Total: -53.43 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.20 Total: -7.74 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.11 Total: -4.56 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.00 -7.28 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330813466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.917 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds