Wall clock time and date at job start Tue Mar 31 2020 14:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.48899 * 2 1 4 4 C 1.53236 * 109.49554 * 239.94580 * 2 1 3 5 5 N 1.47079 * 108.52140 * 186.21117 * 4 2 1 6 6 C 1.37342 * 120.87857 * 231.18424 * 5 4 2 7 7 O 1.35087 * 119.99871 * 354.11679 * 6 5 4 8 8 N 1.30100 * 119.99467 * 174.11454 * 6 5 4 9 9 C 1.46508 * 119.99636 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46775 * 115.00323 * 9 8 6 11 11 C 1.50701 * 109.47169 * 179.97438 * 10 9 8 12 12 H 1.08009 * 119.99508 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00426 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00449 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99825 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47250 * 90.00029 * 15 13 11 17 17 H 1.48495 * 109.47099 * 209.99928 * 15 13 11 18 18 H 1.48498 * 109.47311 * 330.00063 * 15 13 11 19 19 C 1.47086 * 118.23816 * 51.45092 * 5 4 2 20 20 C 1.53699 * 108.27642 * 308.48767 * 19 5 4 21 21 N 1.46895 * 109.49187 * 120.07265 * 2 1 3 22 22 C 1.46900 * 111.00520 * 307.21774 * 21 2 1 23 23 C 1.53001 * 109.47601 * 162.89928 * 22 21 2 24 24 F 1.39895 * 109.46951 * 66.22788 * 23 22 21 25 25 F 1.39898 * 109.47054 * 186.23523 * 23 22 21 26 26 F 1.39904 * 109.46678 * 306.23252 * 23 22 21 27 27 H 1.08999 * 109.46880 * 186.51020 * 1 2 3 28 28 H 1.09003 * 109.47473 * 306.51463 * 1 2 3 29 29 H 1.08999 * 109.46728 * 66.51157 * 1 2 3 30 30 H 1.08993 * 109.63092 * 66.49550 * 4 2 1 31 31 H 1.08999 * 109.78382 * 306.01139 * 4 2 1 32 32 H 0.96698 * 114.00846 * 4.70276 * 7 6 5 33 33 H 1.09001 * 109.46685 * 355.00640 * 9 8 6 34 34 H 1.08998 * 109.46867 * 235.00632 * 9 8 6 35 35 H 1.08995 * 109.47166 * 299.99871 * 10 9 8 36 36 H 1.09000 * 109.47390 * 59.99895 * 10 9 8 37 37 H 0.96991 * 119.99885 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.62342 * 68.25585 * 19 5 4 39 39 H 1.09002 * 109.62736 * 188.83308 * 19 5 4 40 40 H 1.08995 * 109.64508 * 294.07687 * 20 19 5 41 41 H 1.09002 * 109.43818 * 173.96063 * 20 19 5 42 42 H 1.09004 * 109.46986 * 282.89835 * 22 21 2 43 43 H 1.09002 * 109.46875 * 42.89023 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0415 -0.7234 -1.2503 5 7 3.5043 -0.8429 -1.1554 6 6 4.3129 -0.4410 -2.1903 7 8 3.7657 -0.0396 -3.3584 8 7 5.6058 -0.4469 -2.0455 9 6 6.4684 -0.0187 -3.1496 10 6 7.2171 1.2537 -2.7479 11 6 8.1049 1.6938 -3.8833 12 1 8.1320 1.1232 -4.8000 13 6 8.8816 2.8253 -3.7524 14 7 9.6560 3.2097 -4.7435 15 14 8.8341 3.8126 -2.1672 16 1 9.8662 3.2974 -1.2321 17 1 9.1057 5.2416 -2.4658 18 1 7.4926 3.6835 -1.5437 19 6 4.0780 -1.4097 0.0746 20 6 3.4866 -0.6536 1.2751 21 7 2.0202 -0.6939 1.1984 22 6 1.4140 -0.1362 2.4147 23 6 1.5963 -1.1197 3.5725 24 9 2.9561 -1.2282 3.8824 25 9 0.8981 -0.6559 4.6926 26 9 1.1011 -2.3743 3.2010 27 1 -0.3633 -1.0210 0.1165 28 1 -0.3634 0.6115 0.8259 29 1 -0.3633 0.4096 -0.9425 30 1 1.7777 -0.1499 -2.1388 31 1 1.5961 -1.7165 -1.3100 32 1 2.7996 -0.0011 -3.3475 33 1 5.8585 0.1814 -4.0306 34 1 7.1866 -0.8067 -3.3762 35 1 6.4989 2.0416 -2.5214 36 1 7.8269 1.0537 -1.8669 37 1 10.2022 4.0060 -4.6514 38 1 3.8244 -2.4676 0.1432 39 1 5.1613 -1.2900 0.0624 40 1 3.8235 0.3828 1.2575 41 1 3.8157 -1.1274 2.2000 42 1 1.8977 0.8089 2.6613 43 1 0.3505 0.0332 2.2458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330813466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:11 Heat of formation + Delta-G solvation = -178.089388 kcal Electronic energy + Delta-G solvation = -28447.604387 eV Core-core repulsion = 23919.797517 eV Total energy + Delta-G solvation = -4527.806869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.05163 -48.63986 -48.46278 -41.19312 -39.50895 -36.36552 -36.13055 -34.61574 -33.67530 -31.92386 -30.80276 -28.28747 -27.57697 -25.82763 -24.00974 -23.80782 -22.51254 -21.54423 -20.96942 -19.69716 -19.50136 -19.26216 -18.98008 -18.44530 -17.14814 -16.72907 -16.49419 -16.27525 -16.07796 -15.76288 -15.55605 -15.35432 -15.25446 -15.04266 -14.90551 -14.82070 -14.69353 -14.62485 -14.47045 -14.41548 -14.10194 -13.61532 -13.14487 -13.09564 -13.02612 -12.77691 -12.71087 -12.42476 -12.21256 -12.09214 -11.96621 -11.88945 -11.78834 -11.49403 -10.83517 -10.81057 -10.27773 -9.69325 -8.82202 -8.32886 -6.37199 1.31350 1.33407 1.46577 1.62621 1.73993 1.79563 2.33471 2.43959 2.89192 2.99599 3.01787 3.08514 3.41678 3.62220 3.80945 3.83994 4.05988 4.16839 4.20403 4.27309 4.29791 4.42733 4.47570 4.61038 4.71627 4.74798 4.82256 4.95026 4.98106 5.00498 5.06645 5.31046 5.33486 5.46767 5.49107 5.58513 5.73601 5.77720 5.88238 6.24874 6.68539 6.97880 7.25816 7.36717 8.84007 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002912 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.727132 B = 9614.477013 C =10410.478306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.047 0.953 4 C 0.121 3.879 5 N -0.622 5.622 6 C 0.556 3.444 7 O -0.516 6.516 8 N -0.632 5.632 9 C 0.102 3.898 10 C 0.010 3.990 11 C -0.534 4.534 12 H 0.033 0.967 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.955 3.045 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.259 1.259 19 C 0.145 3.855 20 C 0.025 3.975 21 N -0.529 5.529 22 C 0.005 3.995 23 C 0.456 3.544 24 F -0.191 7.191 25 F -0.187 7.187 26 F -0.180 7.180 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.407 0.593 33 H 0.029 0.971 34 H 0.050 0.950 35 H 0.004 0.996 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.182 -8.474 18.252 34.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.036 4.036 3 H 0.065 0.935 4 C -0.001 4.001 5 N -0.353 5.353 6 C 0.244 3.756 7 O -0.314 6.314 8 N -0.382 5.382 9 C -0.028 4.028 10 C -0.028 4.028 11 C -0.572 4.572 12 H 0.051 0.949 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.779 3.221 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.183 1.183 19 C 0.022 3.978 20 C -0.103 4.103 21 N -0.255 5.255 22 C -0.124 4.124 23 C 0.402 3.598 24 F -0.173 7.173 25 F -0.168 7.168 26 F -0.161 7.161 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.266 0.734 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.121 -8.975 18.412 33.987 hybrid contribution 0.113 1.370 -0.192 1.388 sum -27.007 -7.604 18.220 33.454 Atomic orbital electron populations 1.21959 0.90651 1.03905 1.04023 1.22088 0.97589 0.95362 0.88584 0.93538 1.22010 0.77198 1.02764 0.98143 1.46725 1.05323 1.67938 1.15311 1.20812 0.88346 0.87063 0.79381 1.85308 1.29004 1.84209 1.32862 1.72539 0.99025 1.35824 1.30802 1.21194 0.94144 0.96170 0.91297 1.19350 0.94422 0.93670 0.95368 1.21407 1.24365 1.10485 1.00988 0.94886 1.25970 0.94211 0.98345 1.00401 1.70056 1.28390 1.26178 1.34229 0.85587 0.79557 0.77645 0.79342 1.18905 1.20105 1.18311 1.21610 0.98960 0.96852 0.80390 1.23018 0.86898 0.99987 1.00390 1.61831 1.06610 1.55552 1.01470 1.23443 1.06561 0.94516 0.87916 1.20757 0.73081 0.81911 0.84070 1.93081 1.33916 1.96493 1.93774 1.93186 1.79286 1.88599 1.55778 1.93192 1.87382 1.44270 1.91288 0.90600 0.90890 0.89602 0.87880 0.88618 0.73363 0.95235 0.93152 0.97800 0.96823 0.92261 0.90338 0.89683 0.94585 0.87537 0.89048 0.83250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.55 71.98 0.62 0.03 16 2 C 0.07 0.72 2.60 45.00 0.12 0.84 16 3 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 4 C 0.12 1.39 5.80 86.35 0.50 1.89 16 5 N -0.62 -13.41 3.08 -817.33 -2.51 -15.93 16 6 C 0.56 17.30 8.55 179.63 1.54 18.84 16 7 O -0.52 -14.63 11.99 -83.62 -1.00 -15.63 16 8 N -0.63 -25.55 9.17 -465.98 -4.27 -29.82 16 9 C 0.10 4.89 6.27 86.38 0.54 5.44 16 10 C 0.01 0.54 4.36 29.85 0.13 0.67 16 11 C -0.53 -33.53 9.66 25.60 0.25 -33.28 16 12 H 0.03 2.25 7.99 -2.91 -0.02 2.22 16 13 C 0.01 0.48 5.47 84.65 0.46 0.94 16 14 N -0.95 -61.80 13.96 21.44 0.30 -61.50 16 15 Si 0.96 47.40 27.47 68.60 1.88 49.28 16 16 H -0.26 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.26 -12.39 6.54 99.48 0.65 -11.74 16 19 C 0.14 3.11 6.66 86.50 0.58 3.68 16 20 C 0.03 0.44 5.40 86.54 0.47 0.91 16 21 N -0.53 -6.63 4.24 -869.09 -3.68 -10.32 16 22 C 0.00 0.05 4.89 86.30 0.42 0.47 16 23 C 0.46 6.18 3.25 71.98 0.23 6.41 16 24 F -0.19 -3.22 14.45 44.97 0.65 -2.57 16 25 F -0.19 -2.64 17.32 44.97 0.78 -1.86 16 26 F -0.18 -2.90 17.13 44.97 0.77 -2.13 16 27 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.07 0.16 6.37 -2.39 -0.02 0.15 16 29 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.10 0.68 5.71 -2.39 -0.01 0.66 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.41 6.06 6.21 -74.06 -0.46 5.60 16 33 H 0.03 1.44 6.74 -2.39 -0.02 1.42 16 34 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 36 H 0.01 0.73 7.57 -2.39 -0.02 0.71 16 37 H 0.27 16.16 8.31 -92.71 -0.77 15.38 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 2.33 6.96 -2.39 -0.02 2.32 16 40 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.11 1.83 5.21 -2.39 -0.01 1.82 16 42 H 0.09 0.76 8.04 -2.38 -0.02 0.74 16 43 H 0.15 0.66 5.45 -2.39 -0.01 0.65 16 Total: -1.00 -80.38 349.77 -0.71 -81.09 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 0.53 Total: 2.56 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.85 Total: 6.84 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -10.17 Total: -117.57 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.00 Total: -15.63 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 2.20 Total: -6.57 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.88 Total: 49.28 kcal Total: -80.38 -0.71 -81.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330813466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.004 kcal (2) G-P(sol) polarization free energy of solvation -80.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds