Wall clock time and date at job start Tue Mar 31 2020 14:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00155 * 2 1 4 4 C 1.53003 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47024 * 184.99972 * 4 3 2 6 6 C 1.52995 * 109.46967 * 305.00048 * 4 3 2 7 7 N 1.46506 * 109.46997 * 64.99988 * 4 3 2 8 8 C 1.34771 * 119.99515 * 155.00412 * 7 4 3 9 9 O 1.21583 * 120.00543 * 0.26795 * 8 7 4 10 10 N 1.34784 * 119.99547 * 179.97438 * 8 7 4 11 11 C 1.39584 * 119.99910 * 179.97438 * 10 8 7 12 12 N 1.32270 * 119.72590 * 359.97438 * 11 10 8 13 13 C 1.31974 * 121.69004 * 179.97438 * 12 11 10 14 14 C 1.38068 * 120.95069 * 0.02562 * 13 12 11 15 15 C 1.38791 * 119.35694 * 359.97438 * 14 13 12 16 16 C 1.38785 * 118.44784 * 359.73519 * 15 14 13 17 17 O 1.35989 * 120.49811 * 180.28710 * 16 15 14 18 18 C 1.42896 * 116.99731 * 0.24165 * 17 16 15 19 19 C 1.53002 * 109.46977 * 180.02562 * 18 17 16 20 20 C 1.50694 * 109.47106 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00513 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99724 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00236 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99814 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47214 * 60.00097 * 24 22 20 26 26 H 1.48497 * 109.47257 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.47312 * 300.00518 * 24 22 20 28 28 H 1.08996 * 109.47323 * 299.99931 * 1 2 3 29 29 H 1.08999 * 109.47272 * 60.00199 * 1 2 3 30 30 H 1.09000 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47231 * 59.99554 * 3 2 1 32 32 H 1.09006 * 109.46999 * 300.00057 * 3 2 1 33 33 H 1.09002 * 109.46959 * 299.99814 * 6 4 3 34 34 H 1.08999 * 109.47559 * 59.99641 * 6 4 3 35 35 H 1.08999 * 109.46886 * 180.02562 * 6 4 3 36 36 H 0.96999 * 120.00076 * 335.00070 * 7 4 3 37 37 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 38 38 H 1.08003 * 119.52228 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.32033 * 179.97438 * 14 13 12 40 40 H 1.08000 * 120.77862 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47340 * 300.00003 * 18 17 16 42 42 H 1.09001 * 109.47149 * 60.00715 * 18 17 16 43 43 H 1.09004 * 109.47188 * 300.00140 * 19 18 17 44 44 H 1.08993 * 109.47086 * 59.99899 * 19 18 17 45 45 H 0.96999 * 120.00208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1766 0.0889 6 6 3.9790 0.3194 1.1806 7 7 3.9757 0.5644 -1.2528 8 6 5.2195 0.7946 -1.7179 9 8 5.9779 1.5130 -1.0958 10 7 5.6247 0.2235 -2.8696 11 6 6.9127 0.4623 -3.3516 12 7 7.7310 1.2502 -2.6740 13 6 8.9566 1.5020 -3.0936 14 6 9.4340 0.9485 -4.2649 15 6 8.6102 0.1152 -5.0088 16 6 7.3283 -0.1368 -4.5405 17 8 6.4883 -0.9516 -5.2331 18 6 6.9910 -1.5254 -6.4414 19 6 5.9115 -2.4045 -7.0762 20 6 6.4418 -3.0101 -8.3501 21 1 7.4482 -2.7904 -8.6744 22 6 5.6424 -3.8456 -9.1011 23 7 4.4170 -4.1137 -8.7060 24 14 6.2995 -4.5958 -10.6806 25 1 7.4956 -5.4217 -10.3763 26 1 5.2519 -5.4491 -11.2966 27 1 6.6734 -3.5124 -11.6251 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6515 0.7809 2.1122 34 1 3.5359 -0.6724 1.0911 35 1 5.0656 0.2337 1.1804 36 1 3.3720 -0.0119 -1.7470 37 1 5.0212 -0.3533 -3.3634 38 1 9.5952 2.1511 -2.5127 39 1 10.4386 1.1618 -4.5990 40 1 8.9601 -0.3304 -5.9283 41 1 7.2654 -0.7302 -7.1346 42 1 7.8688 -2.1317 -6.2180 43 1 5.6366 -3.1997 -6.3832 44 1 5.0339 -1.7979 -7.2996 45 1 3.8548 -4.7017 -9.2341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341948241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:13 Heat of formation + Delta-G solvation = -70.445395 kcal Electronic energy + Delta-G solvation = -26836.032908 eV Core-core repulsion = 22854.750572 eV Total energy + Delta-G solvation = -3981.282335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87434 -39.68340 -38.34548 -37.71835 -35.49802 -34.52646 -33.45647 -31.75788 -31.17272 -30.26469 -28.78200 -27.62929 -25.97905 -25.39180 -23.82701 -22.79959 -21.73128 -20.84002 -20.45927 -18.74763 -18.06139 -17.46833 -16.84548 -16.30468 -16.13356 -16.01092 -15.80501 -15.51597 -15.08541 -14.93219 -14.60465 -14.50582 -14.00124 -13.86550 -13.71433 -13.31827 -12.83489 -12.77253 -12.41045 -12.38640 -12.09563 -11.97023 -11.89110 -11.46793 -11.19401 -11.05837 -10.96630 -10.67639 -10.65048 -10.31944 -10.04298 -10.01849 -9.76475 -9.41298 -9.21889 -9.05355 -9.00274 -8.50880 -7.57834 -6.16793 -4.21718 1.32472 1.51388 2.49927 3.24563 3.25924 3.29256 3.30384 3.43929 3.57705 3.98811 4.11437 4.34881 4.51904 4.73074 4.78395 4.94468 5.00765 5.04394 5.08125 5.13080 5.19951 5.21616 5.31345 5.37685 5.38275 5.52571 5.59315 5.83066 5.89651 5.92939 6.10425 6.18871 6.23488 6.42386 6.46105 6.57213 6.64051 6.77489 6.91840 7.37834 7.54485 7.66285 7.79860 7.90720 8.15799 8.31829 8.69942 8.83320 9.43054 10.94588 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002906 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.792086 B = 9633.109769 C =12227.357392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.051 3.949 4 C 0.167 3.833 5 H 0.101 0.899 6 C -0.161 4.161 7 N -0.739 5.739 8 C 0.697 3.303 9 O -0.538 6.538 10 N -0.661 5.661 11 C 0.348 3.652 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.164 4.164 15 C -0.147 4.147 16 C 0.064 3.936 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.401 0.599 37 H 0.420 0.580 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 10.987 16.478 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.026 4.026 4 C 0.062 3.938 5 H 0.118 0.882 6 C -0.219 4.219 7 N -0.396 5.396 8 C 0.397 3.603 9 O -0.410 6.410 10 N -0.311 5.311 11 C 0.114 3.886 12 N -0.156 5.156 13 C -0.080 4.080 14 C -0.186 4.186 15 C -0.173 4.173 16 C 0.012 3.988 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.236 0.764 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.445 11.702 17.871 21.501 hybrid contribution -0.035 -1.218 -2.371 2.666 sum -2.480 10.483 15.500 18.876 Atomic orbital electron populations 1.22758 0.80785 1.03011 0.99978 1.87905 1.19834 1.27345 1.95412 1.22895 0.93034 0.85431 1.01254 1.20856 0.91233 0.98202 0.83497 0.88155 1.22103 1.02201 1.00851 0.96763 1.45170 1.13970 1.54218 1.26257 1.15956 0.82433 0.81057 0.80856 1.91012 1.52683 1.39591 1.57701 1.42510 1.13043 1.51081 1.24457 1.17495 0.86406 0.95645 0.89042 1.67638 1.04035 1.13389 1.30577 1.22409 0.91444 0.99394 0.94796 1.21871 1.00924 0.99221 0.96535 1.21581 0.92818 1.01041 1.01892 1.19548 0.91397 0.95084 0.92752 1.86100 1.40066 1.58622 1.38122 1.23378 1.00214 0.96002 0.81171 1.19114 0.93067 0.93846 0.94977 1.20916 0.99921 1.29099 1.06757 0.92392 1.24977 0.94800 0.96186 0.98113 1.69952 1.07488 1.36272 1.38981 0.86546 0.78607 0.79219 0.83002 1.20063 1.21095 1.20074 0.94117 0.93925 0.89444 0.91677 0.92434 0.92017 0.91524 0.91914 0.76431 0.74240 0.82706 0.84880 0.83798 0.92989 0.92974 0.95370 0.95389 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.42 9.55 -35.23 -0.34 -3.76 16 3 C 0.05 0.39 5.68 37.16 0.21 0.60 16 4 C 0.17 1.66 2.98 -67.93 -0.20 1.46 16 5 H 0.10 1.07 7.58 -51.93 -0.39 0.67 16 6 C -0.16 -1.61 9.29 37.16 0.35 -1.26 16 7 N -0.74 -8.56 5.06 -58.67 -0.30 -8.86 16 8 C 0.70 10.65 8.50 -86.92 -0.74 9.91 16 9 O -0.54 -9.90 14.26 5.29 0.08 -9.82 16 10 N -0.66 -10.20 5.40 -15.67 -0.08 -10.28 16 11 C 0.35 5.99 7.45 -154.43 -1.15 4.84 16 12 N -0.44 -7.65 7.87 -12.22 -0.10 -7.74 16 13 C 0.08 1.07 11.17 -17.55 -0.20 0.87 16 14 C -0.16 -2.11 10.10 -39.44 -0.40 -2.50 16 15 C -0.15 -2.19 9.14 -39.17 -0.36 -2.54 16 16 C 0.06 1.09 6.72 -38.92 -0.26 0.83 16 17 O -0.32 -5.93 9.39 -19.70 -0.18 -6.12 16 18 C 0.07 1.32 4.70 37.16 0.17 1.50 16 19 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 20 C -0.53 -14.19 9.11 -34.44 -0.31 -14.50 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 24 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.08 8.40 -40.82 -0.34 3.74 16 37 H 0.42 5.81 8.06 -40.82 -0.33 5.48 16 38 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.14 1.99 6.44 -52.49 -0.34 1.65 16 41 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 42 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -33.11 381.19 -8.27 -41.39 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.79 Total: 5.99 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.02 Total: 2.64 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.26 Total: -51.77 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.45 Total: -19.70 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.11 -8.27 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341948241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.059 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds