Wall clock time and date at job start Tue Mar 31 2020 14:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00155 * 2 1 4 4 C 1.53003 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47024 * 184.99972 * 4 3 2 6 6 C 1.52995 * 109.46967 * 305.00048 * 4 3 2 7 7 N 1.46506 * 109.46997 * 64.99988 * 4 3 2 8 8 C 1.34771 * 119.99515 * 155.00412 * 7 4 3 9 9 O 1.21583 * 120.00543 * 0.26795 * 8 7 4 10 10 N 1.34784 * 119.99547 * 179.97438 * 8 7 4 11 11 C 1.39584 * 119.99910 * 179.97438 * 10 8 7 12 12 N 1.32270 * 119.72590 * 359.97438 * 11 10 8 13 13 C 1.31974 * 121.69004 * 179.97438 * 12 11 10 14 14 C 1.38068 * 120.95069 * 0.02562 * 13 12 11 15 15 C 1.38791 * 119.35694 * 359.97438 * 14 13 12 16 16 C 1.38785 * 118.44784 * 359.73519 * 15 14 13 17 17 O 1.35989 * 120.49811 * 180.28710 * 16 15 14 18 18 C 1.42896 * 116.99731 * 0.24165 * 17 16 15 19 19 C 1.53002 * 109.46977 * 180.02562 * 18 17 16 20 20 C 1.50694 * 109.47106 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00513 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99724 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00236 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99814 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47214 * 60.00097 * 24 22 20 26 26 H 1.48497 * 109.47257 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.47312 * 300.00518 * 24 22 20 28 28 H 1.08996 * 109.47323 * 299.99931 * 1 2 3 29 29 H 1.08999 * 109.47272 * 60.00199 * 1 2 3 30 30 H 1.09000 * 109.46957 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47231 * 59.99554 * 3 2 1 32 32 H 1.09006 * 109.46999 * 300.00057 * 3 2 1 33 33 H 1.09002 * 109.46959 * 299.99814 * 6 4 3 34 34 H 1.08999 * 109.47559 * 59.99641 * 6 4 3 35 35 H 1.08999 * 109.46886 * 180.02562 * 6 4 3 36 36 H 0.96999 * 120.00076 * 335.00070 * 7 4 3 37 37 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 38 38 H 1.08003 * 119.52228 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.32033 * 179.97438 * 14 13 12 40 40 H 1.08000 * 120.77862 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47340 * 300.00003 * 18 17 16 42 42 H 1.09001 * 109.47149 * 60.00715 * 18 17 16 43 43 H 1.09004 * 109.47188 * 300.00140 * 19 18 17 44 44 H 1.08993 * 109.47086 * 59.99899 * 19 18 17 45 45 H 0.96999 * 120.00208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1766 0.0889 6 6 3.9790 0.3194 1.1806 7 7 3.9757 0.5644 -1.2528 8 6 5.2195 0.7946 -1.7179 9 8 5.9779 1.5130 -1.0958 10 7 5.6247 0.2235 -2.8696 11 6 6.9127 0.4623 -3.3516 12 7 7.7310 1.2502 -2.6740 13 6 8.9566 1.5020 -3.0936 14 6 9.4340 0.9485 -4.2649 15 6 8.6102 0.1152 -5.0088 16 6 7.3283 -0.1368 -4.5405 17 8 6.4883 -0.9516 -5.2331 18 6 6.9910 -1.5254 -6.4414 19 6 5.9115 -2.4045 -7.0762 20 6 6.4418 -3.0101 -8.3501 21 1 7.4482 -2.7904 -8.6744 22 6 5.6424 -3.8456 -9.1011 23 7 4.4170 -4.1137 -8.7060 24 14 6.2995 -4.5958 -10.6806 25 1 7.4956 -5.4217 -10.3763 26 1 5.2519 -5.4491 -11.2966 27 1 6.6734 -3.5124 -11.6251 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6515 0.7809 2.1122 34 1 3.5359 -0.6724 1.0911 35 1 5.0656 0.2337 1.1804 36 1 3.3720 -0.0119 -1.7470 37 1 5.0212 -0.3533 -3.3634 38 1 9.5952 2.1511 -2.5127 39 1 10.4386 1.1618 -4.5990 40 1 8.9601 -0.3304 -5.9283 41 1 7.2654 -0.7302 -7.1346 42 1 7.8688 -2.1317 -6.2180 43 1 5.6366 -3.1997 -6.3832 44 1 5.0339 -1.7979 -7.2996 45 1 3.8548 -4.7017 -9.2341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341948241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:12 Heat of formation + Delta-G solvation = -93.034705 kcal Electronic energy + Delta-G solvation = -26837.012454 eV Core-core repulsion = 22854.750572 eV Total energy + Delta-G solvation = -3982.261881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07388 -40.81968 -39.25816 -38.90307 -36.42768 -35.75709 -35.42462 -32.92516 -32.54599 -31.71507 -30.01186 -28.25936 -27.15354 -26.60074 -25.15242 -24.06596 -23.02840 -22.18567 -21.55633 -19.93278 -19.33369 -18.79024 -18.02930 -17.57540 -17.24855 -17.16273 -16.96919 -16.50305 -16.46173 -16.16899 -15.83854 -15.56760 -15.17358 -14.96270 -14.93659 -14.34399 -14.21660 -14.12729 -13.67518 -13.49719 -13.27481 -13.11145 -12.79466 -12.76776 -12.71670 -12.44140 -12.12245 -12.00168 -11.83241 -11.69174 -11.64263 -11.53888 -11.41060 -10.62002 -10.59508 -10.41197 -10.22184 -10.10043 -8.80434 -8.24894 -6.37569 0.16950 0.32436 1.42480 1.42944 1.45612 1.53403 2.10395 2.13438 2.45295 2.79842 2.93738 2.98605 3.10214 3.59580 3.80146 3.88523 4.00391 4.08746 4.15712 4.30727 4.35211 4.35424 4.47982 4.50140 4.52458 4.60060 4.66759 4.75892 4.79964 4.92690 4.93971 5.00586 5.16116 5.29156 5.32487 5.34266 5.50739 5.51180 5.55050 5.72024 5.83809 6.08873 6.20838 6.36745 6.72927 6.77144 7.17465 7.32394 7.54154 8.87526 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002906 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.792086 B = 9633.109769 C =12227.357392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.058 3.942 4 C 0.162 3.838 5 H 0.094 0.906 6 C -0.153 4.153 7 N -0.726 5.726 8 C 0.695 3.305 9 O -0.572 6.572 10 N -0.662 5.662 11 C 0.329 3.671 12 N -0.472 5.472 13 C 0.075 3.925 14 C -0.148 4.148 15 C -0.147 4.147 16 C 0.038 3.962 17 O -0.330 6.330 18 C 0.084 3.916 19 C 0.030 3.970 20 C -0.546 4.546 21 H 0.071 0.929 22 C 0.004 3.996 23 N -0.929 5.929 24 Si 0.971 3.029 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.265 1.265 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.408 0.592 37 H 0.423 0.577 38 H 0.186 0.814 39 H 0.176 0.824 40 H 0.157 0.843 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.000 1.000 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 11.688 16.136 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.019 4.019 4 C 0.058 3.942 5 H 0.112 0.888 6 C -0.211 4.211 7 N -0.383 5.383 8 C 0.394 3.606 9 O -0.447 6.447 10 N -0.312 5.312 11 C 0.096 3.904 12 N -0.187 5.187 13 C -0.082 4.082 14 C -0.169 4.169 15 C -0.173 4.173 16 C -0.013 4.013 17 O -0.243 6.243 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.583 4.583 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.189 1.189 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.244 0.756 37 H 0.261 0.739 38 H 0.203 0.797 39 H 0.193 0.807 40 H 0.175 0.825 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.112 12.402 17.543 21.513 hybrid contribution -0.427 -1.364 -2.162 2.592 sum -1.539 11.038 15.380 18.994 Atomic orbital electron populations 1.22892 0.79498 1.03613 1.00925 1.87870 1.21282 1.27928 1.95621 1.22853 0.91011 0.85382 1.02662 1.21029 0.93051 0.97599 0.82546 0.88831 1.22021 1.00337 1.00840 0.97905 1.45182 1.12776 1.53740 1.26632 1.16124 0.83094 0.80736 0.80603 1.90970 1.53899 1.41204 1.58624 1.42548 1.12967 1.51118 1.24590 1.17691 0.87031 0.96236 0.89429 1.67685 1.05473 1.14070 1.31476 1.23065 0.90699 0.99044 0.95397 1.22264 1.02200 0.97170 0.95218 1.21886 0.92060 1.00971 1.02403 1.19693 0.92374 0.96040 0.93155 1.86028 1.40879 1.59582 1.37851 1.22947 0.98342 0.95824 0.81949 1.18934 0.93718 0.93476 0.94549 1.21378 1.00549 1.29041 1.07380 0.91075 1.25965 0.94971 0.96718 1.01817 1.70094 1.08961 1.37169 1.40601 0.85416 0.78080 0.78506 0.78555 1.18953 1.21028 1.18922 0.92656 0.93458 0.89119 0.89317 0.91900 0.89800 0.92047 0.94506 0.75603 0.73870 0.79707 0.80684 0.82529 0.91766 0.91839 0.98125 0.98049 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.41 -6.83 9.55 -148.98 -1.42 -8.26 16 3 C 0.06 0.82 5.68 71.98 0.41 1.23 16 4 C 0.16 3.21 2.98 44.99 0.13 3.34 16 5 H 0.09 2.01 7.58 -2.39 -0.02 1.99 16 6 C -0.15 -3.05 9.29 71.98 0.67 -2.38 16 7 N -0.73 -17.27 5.06 -457.81 -2.32 -19.59 16 8 C 0.69 21.96 8.50 179.05 1.52 23.48 16 9 O -0.57 -21.68 14.26 -3.98 -0.06 -21.74 16 10 N -0.66 -21.24 5.40 -321.76 -1.74 -22.97 16 11 C 0.33 11.46 7.45 132.98 0.99 12.45 16 12 N -0.47 -16.19 7.87 -192.58 -1.52 -17.71 16 13 C 0.07 1.94 11.17 84.63 0.95 2.88 16 14 C -0.15 -3.32 10.10 22.36 0.23 -3.09 16 15 C -0.15 -4.08 9.14 22.53 0.21 -3.88 16 16 C 0.04 1.30 6.72 22.70 0.15 1.46 16 17 O -0.33 -12.59 9.39 -93.42 -0.88 -13.47 16 18 C 0.08 3.33 4.70 71.98 0.34 3.67 16 19 C 0.03 1.56 5.34 29.85 0.16 1.71 16 20 C -0.55 -29.33 9.11 25.60 0.23 -29.10 16 21 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 22 C 0.00 0.23 5.46 84.66 0.46 0.69 16 23 N -0.93 -54.64 13.29 21.45 0.28 -54.36 16 24 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.28 7.56 -2.39 -0.02 1.27 16 35 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.41 8.53 8.40 -92.71 -0.78 7.76 16 37 H 0.42 12.42 8.06 -92.71 -0.75 11.68 16 38 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.16 3.90 6.44 -2.91 -0.02 3.89 16 41 H 0.06 2.38 7.69 -2.39 -0.02 2.36 16 42 H 0.06 2.36 7.71 -2.39 -0.02 2.34 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -73.15 381.19 1.57 -71.59 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -0.51 Total: 28.34 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 7.69 Total: 14.02 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -5.29 Total: -114.63 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.36 Total: -43.46 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -73.15 1.57 -71.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341948241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.447 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds