Wall clock time and date at job start Tue Mar 31 2020 14:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47053 * 2 1 4 4 N 1.46900 * 109.47344 * 240.00020 * 2 1 3 5 5 C 1.46896 * 110.99988 * 77.29353 * 4 2 1 6 6 C 1.53242 * 109.34069 * 172.74500 * 5 4 2 7 7 N 1.47086 * 108.51923 * 53.82722 * 6 5 4 8 8 C 1.34777 * 120.87837 * 128.83699 * 7 6 5 9 9 O 1.21585 * 119.99610 * 184.20491 * 8 7 6 10 10 N 1.34779 * 120.00034 * 4.20639 * 8 7 6 11 11 C 1.46495 * 119.99824 * 174.97611 * 10 8 7 12 12 C 1.52998 * 109.46980 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47198 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00090 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46864 * 60.00254 * 17 15 13 19 19 H 1.48502 * 109.47017 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47304 * 300.00145 * 17 15 13 21 21 C 1.47078 * 118.23878 * 308.81923 * 7 6 5 22 22 C 1.46894 * 111.00136 * 312.99073 * 4 2 1 23 23 C 1.52998 * 109.47354 * 119.99584 * 2 1 3 24 24 F 1.39898 * 109.47668 * 173.92518 * 23 2 1 25 25 F 1.39901 * 109.47002 * 293.92805 * 23 2 1 26 26 F 1.39901 * 109.46664 * 53.92241 * 23 2 1 27 27 H 1.08999 * 109.46825 * 60.00260 * 1 2 3 28 28 H 1.08999 * 109.46509 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47335 * 300.00023 * 1 2 3 30 30 H 1.08996 * 109.49568 * 292.70443 * 5 4 2 31 31 H 1.09001 * 109.49223 * 52.79181 * 5 4 2 32 32 H 1.09004 * 109.62940 * 294.12391 * 6 5 4 33 33 H 1.09002 * 109.63185 * 173.53934 * 6 5 4 34 34 H 0.96998 * 119.99625 * 354.97388 * 10 8 7 35 35 H 1.08997 * 109.47578 * 299.99961 * 11 10 8 36 36 H 1.08996 * 109.47358 * 60.00133 * 11 10 8 37 37 H 1.09001 * 109.47258 * 299.99720 * 12 11 10 38 38 H 1.09001 * 109.47226 * 59.99864 * 12 11 10 39 39 H 0.97001 * 119.99809 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.62756 * 291.47656 * 21 7 6 41 41 H 1.08999 * 109.62600 * 170.89147 * 21 7 6 42 42 H 1.09006 * 109.48984 * 307.21780 * 22 4 2 43 43 H 1.09000 * 109.49179 * 67.26683 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.9108 0.1677 -2.3852 6 6 2.5942 -0.5173 -3.5736 7 7 2.0236 -1.8643 -3.7277 8 6 1.5605 -2.2869 -4.9207 9 8 1.0228 -3.3735 -5.0137 10 7 1.6933 -1.5052 -6.0105 11 6 1.2904 -2.0081 -7.3261 12 6 1.5428 -0.9310 -8.3830 13 6 1.1277 -1.4481 -9.7364 14 1 0.7247 -2.4454 -9.8330 15 6 1.2626 -0.6479 -10.8511 16 7 1.7538 0.5664 -10.7334 17 14 0.7488 -1.2891 -12.5287 18 1 -0.6958 -1.6325 -12.5061 19 1 0.9936 -0.2436 -13.5544 20 1 1.5406 -2.5011 -12.8591 21 6 1.9724 -2.7377 -2.5454 22 6 1.3136 -1.9652 -1.3977 23 6 2.0401 -0.7211 1.2493 24 9 3.4321 -0.8433 1.1817 25 9 1.6911 0.0141 2.3872 26 9 1.4632 -1.9936 1.3212 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.8592 0.3354 -2.6176 31 1 2.3970 1.1230 -2.1875 32 1 3.6654 -0.5927 -3.3864 33 1 2.4179 0.0610 -4.4806 34 1 2.0556 -0.6096 -5.9237 35 1 1.8710 -2.8983 -7.5683 36 1 0.2299 -2.2593 -7.3100 37 1 0.9618 -0.0411 -8.1408 38 1 2.6032 -0.6793 -8.3993 39 1 1.8483 1.1294 -11.5176 40 1 2.9838 -3.0264 -2.2594 41 1 1.3850 -3.6273 -2.7727 42 1 1.3665 -2.5567 -0.4836 43 1 0.2702 -1.7678 -1.6433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:15 Heat of formation + Delta-G solvation = -169.139461 kcal Electronic energy + Delta-G solvation = -28294.492205 eV Core-core repulsion = 23767.073433 eV Total energy + Delta-G solvation = -4527.418771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.43830 -48.00010 -47.81793 -40.41345 -38.75268 -35.49774 -34.89323 -32.92123 -31.56526 -31.42697 -29.40247 -27.30424 -26.35702 -24.79181 -23.91504 -22.56057 -21.36937 -20.81345 -19.31174 -18.89071 -18.75280 -18.01798 -17.61323 -16.46099 -16.05216 -15.87428 -15.59297 -15.27865 -14.95303 -14.73155 -14.66296 -14.51106 -14.29936 -14.17650 -14.04687 -13.99049 -13.85420 -13.71079 -13.44936 -13.03812 -12.70815 -12.43203 -12.35233 -12.25725 -12.07018 -11.46648 -11.35616 -11.27126 -11.13438 -11.02473 -10.65575 -10.33201 -9.91975 -9.55742 -9.28974 -9.11519 -8.71306 -8.46552 -8.21189 -6.10353 -4.12981 2.30937 2.75702 3.11242 3.30820 3.34535 3.38174 3.39811 3.51302 3.64925 4.02963 4.16639 4.35193 4.42656 4.45307 4.57209 4.72906 4.80387 4.92710 4.99514 5.05560 5.14637 5.26814 5.29390 5.36055 5.48885 5.58478 5.66608 5.84899 6.19237 6.25167 6.38236 6.40474 6.53331 6.75549 6.97054 7.14566 7.53665 7.61307 7.88557 8.22568 8.34307 8.89981 8.95375 9.51798 11.01304 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.033726 B = 0.002240 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.025979 B =12498.828777 C =12819.884874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.125 0.875 4 N -0.525 5.525 5 C 0.044 3.956 6 C 0.117 3.883 7 N -0.638 5.638 8 C 0.703 3.297 9 O -0.595 6.595 10 N -0.739 5.739 11 C 0.139 3.861 12 C 0.014 3.986 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.138 3.862 22 C 0.016 3.984 23 C 0.461 3.539 24 F -0.171 7.171 25 F -0.184 7.184 26 F -0.180 7.180 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.392 0.608 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 2.361 26.246 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.072 4.072 3 H 0.143 0.857 4 N -0.249 5.249 5 C -0.084 4.084 6 C -0.007 4.007 7 N -0.378 5.378 8 C 0.405 3.595 9 O -0.474 6.474 10 N -0.394 5.394 11 C 0.016 3.984 12 C -0.024 4.024 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.014 3.986 22 C -0.112 4.112 23 C 0.406 3.594 24 F -0.153 7.153 25 F -0.166 7.166 26 F -0.162 7.162 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.227 0.773 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.150 1.570 26.085 26.158 hybrid contribution -0.775 0.407 -0.757 1.158 sum 0.375 1.977 25.328 25.408 Atomic orbital electron populations 1.22492 0.93576 1.04544 1.04457 1.22826 0.96304 0.99408 0.88681 0.85712 1.61992 1.55955 1.04900 1.02085 1.22561 1.00470 0.96085 0.89329 1.21677 0.98430 0.83213 0.97361 1.47339 1.66051 1.15705 1.08658 1.15962 0.79145 0.84253 0.80182 1.90878 1.49472 1.22401 1.84622 1.45697 1.68465 1.17814 1.07409 1.21604 0.99006 0.98717 0.79039 1.19313 0.97590 0.93269 0.92182 1.21013 1.42627 1.00712 0.91641 0.92264 1.24991 0.95059 0.94843 0.99373 1.69943 1.45181 1.08100 1.30164 0.86566 0.79224 0.78518 0.83193 1.20109 1.21257 1.20091 1.21458 1.01439 0.93297 0.82368 1.23073 0.96643 0.90622 1.00875 1.20468 0.76109 0.77420 0.85408 1.93212 1.29739 1.95884 1.96415 1.93181 1.91983 1.77121 1.54269 1.93072 1.84533 1.42322 1.96270 0.90127 0.90444 0.90557 0.93292 0.88975 0.90358 0.89366 0.77290 0.92799 0.92741 0.96057 0.95993 0.92798 0.91118 0.88238 0.87924 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.12 8.06 37.16 0.30 -0.82 16 2 C 0.04 0.25 2.41 -67.71 -0.16 0.09 16 3 H 0.13 0.61 7.83 -51.92 -0.41 0.20 16 4 N -0.53 -4.23 4.34 -226.35 -0.98 -5.22 16 5 C 0.04 0.33 5.37 -3.70 -0.02 0.31 16 6 C 0.12 1.13 6.55 -3.60 -0.02 1.11 16 7 N -0.64 -8.36 3.01 -178.19 -0.54 -8.90 16 8 C 0.70 12.38 8.31 -86.92 -0.72 11.65 16 9 O -0.60 -12.76 15.80 5.29 0.08 -12.67 16 10 N -0.74 -13.06 5.47 -65.23 -0.36 -13.41 16 11 C 0.14 2.98 5.62 -4.05 -0.02 2.96 16 12 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 13 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.14 1.58 6.61 -3.61 -0.02 1.56 16 22 C 0.02 0.15 4.35 -3.71 -0.02 0.13 16 23 C 0.46 3.69 2.79 37.16 0.10 3.80 16 24 F -0.17 -1.64 17.13 2.25 0.04 -1.60 16 25 F -0.18 -1.49 17.04 2.25 0.04 -1.46 16 26 F -0.18 -1.58 13.70 2.25 0.03 -1.55 16 27 H 0.08 0.46 7.16 -51.93 -0.37 0.09 16 28 H 0.08 0.51 6.00 -51.93 -0.31 0.20 16 29 H 0.08 0.38 7.97 -51.93 -0.41 -0.03 16 30 H 0.05 0.40 7.23 -51.93 -0.38 0.02 16 31 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.82 5.72 -51.93 -0.30 0.53 16 34 H 0.39 5.96 6.00 -40.82 -0.24 5.71 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.29 7.04 -51.93 -0.37 0.93 16 42 H 0.10 0.89 5.22 -51.93 -0.27 0.62 16 43 H 0.05 0.49 6.69 -51.93 -0.35 0.15 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -32.25 350.02 -7.73 -39.98 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.89 Total: 0.63 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -1.14 Total: 7.83 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -1.14 Total: -52.71 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.67 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.11 Total: -4.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.25 -7.73 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.160 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds