Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47053 * 2 1 4 4 N 1.46900 * 109.47344 * 240.00020 * 2 1 3 5 5 C 1.46896 * 110.99988 * 77.29353 * 4 2 1 6 6 C 1.53242 * 109.34069 * 172.74500 * 5 4 2 7 7 N 1.47086 * 108.51923 * 53.82722 * 6 5 4 8 8 C 1.34777 * 120.87837 * 128.83699 * 7 6 5 9 9 O 1.21585 * 119.99610 * 184.20491 * 8 7 6 10 10 N 1.34779 * 120.00034 * 4.20639 * 8 7 6 11 11 C 1.46495 * 119.99824 * 174.97611 * 10 8 7 12 12 C 1.52998 * 109.46980 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47198 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00090 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46864 * 60.00254 * 17 15 13 19 19 H 1.48502 * 109.47017 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47304 * 300.00145 * 17 15 13 21 21 C 1.47078 * 118.23878 * 308.81923 * 7 6 5 22 22 C 1.46894 * 111.00136 * 312.99073 * 4 2 1 23 23 C 1.52998 * 109.47354 * 119.99584 * 2 1 3 24 24 F 1.39898 * 109.47668 * 173.92518 * 23 2 1 25 25 F 1.39901 * 109.47002 * 293.92805 * 23 2 1 26 26 F 1.39901 * 109.46664 * 53.92241 * 23 2 1 27 27 H 1.08999 * 109.46825 * 60.00260 * 1 2 3 28 28 H 1.08999 * 109.46509 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47335 * 300.00023 * 1 2 3 30 30 H 1.08996 * 109.49568 * 292.70443 * 5 4 2 31 31 H 1.09001 * 109.49223 * 52.79181 * 5 4 2 32 32 H 1.09004 * 109.62940 * 294.12391 * 6 5 4 33 33 H 1.09002 * 109.63185 * 173.53934 * 6 5 4 34 34 H 0.96998 * 119.99625 * 354.97388 * 10 8 7 35 35 H 1.08997 * 109.47578 * 299.99961 * 11 10 8 36 36 H 1.08996 * 109.47358 * 60.00133 * 11 10 8 37 37 H 1.09001 * 109.47258 * 299.99720 * 12 11 10 38 38 H 1.09001 * 109.47226 * 59.99864 * 12 11 10 39 39 H 0.97001 * 119.99809 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.62756 * 291.47656 * 21 7 6 41 41 H 1.08999 * 109.62600 * 170.89147 * 21 7 6 42 42 H 1.09006 * 109.48984 * 307.21780 * 22 4 2 43 43 H 1.09000 * 109.49179 * 67.26683 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.9108 0.1677 -2.3852 6 6 2.5942 -0.5173 -3.5736 7 7 2.0236 -1.8643 -3.7277 8 6 1.5605 -2.2869 -4.9207 9 8 1.0228 -3.3735 -5.0137 10 7 1.6933 -1.5052 -6.0105 11 6 1.2904 -2.0081 -7.3261 12 6 1.5428 -0.9310 -8.3830 13 6 1.1277 -1.4481 -9.7364 14 1 0.7247 -2.4454 -9.8330 15 6 1.2626 -0.6479 -10.8511 16 7 1.7538 0.5664 -10.7334 17 14 0.7488 -1.2891 -12.5287 18 1 -0.6958 -1.6325 -12.5061 19 1 0.9936 -0.2436 -13.5544 20 1 1.5406 -2.5011 -12.8591 21 6 1.9724 -2.7377 -2.5454 22 6 1.3136 -1.9652 -1.3977 23 6 2.0401 -0.7211 1.2493 24 9 3.4321 -0.8433 1.1817 25 9 1.6911 0.0141 2.3872 26 9 1.4632 -1.9936 1.3212 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.8592 0.3354 -2.6176 31 1 2.3970 1.1230 -2.1875 32 1 3.6654 -0.5927 -3.3864 33 1 2.4179 0.0610 -4.4806 34 1 2.0556 -0.6096 -5.9237 35 1 1.8710 -2.8983 -7.5683 36 1 0.2299 -2.2593 -7.3100 37 1 0.9618 -0.0411 -8.1408 38 1 2.6032 -0.6793 -8.3993 39 1 1.8483 1.1294 -11.5176 40 1 2.9838 -3.0264 -2.2594 41 1 1.3850 -3.6273 -2.7727 42 1 1.3665 -2.5567 -0.4836 43 1 0.2702 -1.7678 -1.6433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345815681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -190.989347 kcal Electronic energy + Delta-G solvation = -28295.439687 eV Core-core repulsion = 23767.073433 eV Total energy + Delta-G solvation = -4528.366253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.07987 -48.63975 -48.48384 -41.52252 -39.74040 -36.73746 -36.35447 -34.83969 -32.50728 -32.29156 -31.05718 -28.02286 -27.27411 -26.41842 -24.87558 -23.41042 -22.90769 -21.97485 -20.48226 -19.59935 -19.40225 -19.02076 -18.53113 -18.26612 -17.19640 -16.92493 -16.61211 -16.46367 -16.07114 -15.83381 -15.43283 -15.34459 -15.32231 -15.17213 -15.05827 -14.89909 -14.70631 -14.65143 -14.30440 -14.20466 -14.15643 -13.46231 -13.24764 -13.11970 -12.99279 -12.91179 -12.74519 -12.53080 -12.23633 -12.18469 -12.04327 -11.99658 -11.65428 -11.46055 -11.13706 -10.59120 -10.22092 -9.76955 -9.37768 -8.23151 -6.33162 1.42641 1.44974 1.52209 1.59214 1.73982 2.10727 2.40496 2.44665 2.82005 2.98150 3.07432 3.11740 3.42390 3.71085 3.87879 3.93318 3.96578 4.17106 4.19344 4.30862 4.44456 4.49812 4.52226 4.54437 4.64187 4.71441 4.77922 4.83419 4.86932 4.97745 5.10164 5.30247 5.44582 5.51878 5.60066 5.60168 5.74320 5.79957 5.95395 6.18140 6.79427 6.97149 7.35960 7.53921 8.88524 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.033726 B = 0.002240 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.025979 B =12498.828777 C =12819.884874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 H 0.149 0.851 4 N -0.530 5.530 5 C 0.048 3.952 6 C 0.110 3.890 7 N -0.629 5.629 8 C 0.700 3.300 9 O -0.638 6.638 10 N -0.733 5.733 11 C 0.160 3.840 12 C 0.026 3.974 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.269 1.269 21 C 0.135 3.865 22 C 0.027 3.973 23 C 0.458 3.542 24 F -0.181 7.181 25 F -0.184 7.184 26 F -0.187 7.187 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.405 0.595 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 3.380 26.944 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.066 4.066 3 H 0.167 0.833 4 N -0.254 5.254 5 C -0.079 4.079 6 C -0.013 4.013 7 N -0.367 5.367 8 C 0.402 3.598 9 O -0.521 6.521 10 N -0.390 5.390 11 C 0.036 3.964 12 C -0.011 4.011 13 C -0.586 4.586 14 H 0.076 0.924 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.194 1.194 21 C 0.012 3.988 22 C -0.101 4.101 23 C 0.404 3.596 24 F -0.163 7.163 25 F -0.166 7.166 26 F -0.169 7.169 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.243 0.757 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.286 2.627 26.841 27.000 hybrid contribution -0.766 0.110 -0.871 1.165 sum 0.520 2.737 25.970 26.119 Atomic orbital electron populations 1.22469 0.92936 1.04146 1.05187 1.22908 0.96697 1.00014 0.86997 0.83293 1.61937 1.55969 1.04700 1.02837 1.22575 1.00462 0.96781 0.88113 1.21967 0.99198 0.81376 0.98724 1.47379 1.64719 1.17221 1.07395 1.16076 0.79040 0.83568 0.81148 1.90845 1.51437 1.24251 1.85522 1.45373 1.68720 1.18537 1.06337 1.21077 0.98031 0.97187 0.80118 1.19105 0.96284 0.93469 0.92280 1.21431 1.42948 1.00940 0.93270 0.92388 1.25840 0.94914 0.95026 1.03242 1.70041 1.45919 1.09147 1.31380 0.85522 0.79073 0.78126 0.78476 1.19396 1.20547 1.19421 1.21562 1.01866 0.92942 0.82422 1.22906 0.96117 0.91267 0.99835 1.20726 0.75625 0.77289 0.85995 1.93193 1.30639 1.95940 1.96484 1.93180 1.91924 1.77041 1.54446 1.93059 1.84568 1.42925 1.96321 0.89719 0.91444 0.89488 0.93480 0.85913 0.89183 0.89046 0.75742 0.93938 0.93965 0.97249 0.97243 0.92516 0.90251 0.90237 0.87375 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.06 71.98 0.58 -1.19 16 2 C 0.04 0.46 2.41 44.92 0.11 0.57 16 3 H 0.15 0.87 7.83 -2.38 -0.02 0.85 16 4 N -0.53 -7.27 4.34 -870.03 -3.78 -11.05 16 5 C 0.05 0.60 5.37 86.38 0.46 1.06 16 6 C 0.11 1.91 6.55 86.35 0.57 2.47 16 7 N -0.63 -16.00 3.01 -835.92 -2.52 -18.52 16 8 C 0.70 24.73 8.31 179.05 1.49 26.22 16 9 O -0.64 -27.99 15.80 -3.99 -0.06 -28.06 16 10 N -0.73 -25.95 5.47 -478.55 -2.62 -28.56 16 11 C 0.16 6.98 5.62 86.38 0.49 7.47 16 12 C 0.03 1.31 5.09 29.85 0.15 1.46 16 13 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.01 0.48 5.46 84.65 0.46 0.95 16 16 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 17 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.14 3.03 6.61 86.35 0.57 3.61 16 22 C 0.03 0.46 4.35 86.38 0.38 0.84 16 23 C 0.46 6.46 2.79 71.98 0.20 6.67 16 24 F -0.18 -3.14 17.13 44.97 0.77 -2.37 16 25 F -0.18 -2.64 17.04 44.97 0.77 -1.87 16 26 F -0.19 -3.03 13.70 44.97 0.62 -2.41 16 27 H 0.08 0.76 7.16 -2.39 -0.02 0.74 16 28 H 0.07 0.79 6.00 -2.39 -0.01 0.77 16 29 H 0.09 0.65 7.97 -2.39 -0.02 0.63 16 30 H 0.05 0.63 7.23 -2.39 -0.02 0.62 16 31 H 0.12 0.84 7.92 -2.39 -0.02 0.82 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.53 5.72 -2.39 -0.01 1.52 16 34 H 0.40 12.08 6.00 -92.71 -0.56 11.53 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 2.12 7.04 -2.39 -0.02 2.11 16 42 H 0.11 1.75 5.22 -2.38 -0.01 1.74 16 43 H 0.05 0.85 6.69 -2.39 -0.02 0.84 16 Total: -1.00 -69.38 350.02 1.67 -67.72 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.49 Total: 13.22 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.69 Total: 19.88 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -8.63 Total: -111.46 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 2.15 Total: -6.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -69.38 1.67 -67.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.271 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds