Wall clock time and date at job start Tue Mar 31 2020 14:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46825 * 2 1 4 4 N 1.46905 * 109.47226 * 119.99989 * 2 1 3 5 5 C 1.46896 * 110.99970 * 192.25129 * 4 2 1 6 6 C 1.53240 * 109.33591 * 187.25341 * 5 4 2 7 7 N 1.47080 * 108.52246 * 306.16291 * 6 5 4 8 8 C 1.34772 * 120.88163 * 231.19273 * 7 6 5 9 9 O 1.21588 * 119.99570 * 184.99048 * 8 7 6 10 10 N 1.34781 * 120.00268 * 4.98642 * 8 7 6 11 11 C 1.46497 * 119.99692 * 174.92381 * 10 8 7 12 12 C 1.53001 * 109.46866 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47198 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99765 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00400 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47153 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47118 * 119.99626 * 17 15 13 20 20 H 1.48498 * 109.47444 * 239.99788 * 17 15 13 21 21 C 1.47073 * 118.23385 * 51.46293 * 7 6 5 22 22 C 1.46905 * 110.99557 * 316.55101 * 4 2 1 23 23 C 1.52998 * 109.47132 * 239.99941 * 2 1 3 24 24 F 1.39901 * 109.46937 * 294.15320 * 23 2 1 25 25 F 1.39899 * 109.47373 * 54.15325 * 23 2 1 26 26 F 1.39898 * 109.47212 * 174.15845 * 23 2 1 27 27 H 1.09003 * 109.47289 * 299.99770 * 1 2 3 28 28 H 1.08999 * 109.47095 * 60.00244 * 1 2 3 29 29 H 1.09008 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.49427 * 67.28952 * 5 4 2 31 31 H 1.08998 * 109.49114 * 307.20701 * 5 4 2 32 32 H 1.09007 * 109.62398 * 186.45477 * 6 5 4 33 33 H 1.08994 * 109.63228 * 65.88187 * 6 5 4 34 34 H 0.96994 * 119.99810 * 354.93526 * 10 8 7 35 35 H 1.09000 * 109.46977 * 60.00608 * 11 10 8 36 36 H 1.08996 * 109.47864 * 300.00655 * 11 10 8 37 37 H 1.09004 * 109.47078 * 300.00523 * 12 11 10 38 38 H 1.09000 * 109.47038 * 60.00386 * 12 11 10 39 39 H 0.96999 * 120.00336 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.63158 * 68.24804 * 21 7 6 41 41 H 1.08999 * 109.62922 * 188.83661 * 21 7 6 42 42 H 1.09002 * 109.48982 * 292.70161 * 22 4 2 43 43 H 1.08996 * 109.49812 * 52.78707 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4587 -0.4653 1.3879 6 6 3.9651 -1.3443 2.5365 7 7 3.1344 -1.0873 3.7227 8 6 3.6978 -0.7917 4.9108 9 8 3.0017 -0.6716 5.9005 10 7 5.0326 -0.6293 5.0020 11 6 5.6334 -0.1994 6.2670 12 6 7.1507 -0.0928 6.1007 13 6 7.7689 0.3489 7.4022 14 1 7.1423 0.5353 8.2618 15 6 9.1343 0.5159 7.4952 16 7 9.8973 0.2893 6.4482 17 14 9.9006 1.0640 9.1082 18 1 8.8342 1.2501 10.1248 19 1 10.8571 0.0300 9.5785 20 1 10.6197 2.3471 8.9038 21 6 1.6729 -1.1675 3.5793 22 6 1.2564 -0.2898 2.3883 23 6 2.0400 -0.7213 -1.2492 24 9 1.6866 -2.0733 -1.1840 25 9 1.4672 -0.1440 -2.3876 26 9 3.4325 -0.6061 -1.3183 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.6329 0.5834 1.6283 31 1 3.9905 -0.7220 0.4717 32 1 5.0037 -1.0970 2.7562 33 1 3.8874 -2.3945 2.2555 34 1 5.5954 -0.7970 4.2300 35 1 5.4031 -0.9276 7.0447 36 1 5.2300 0.7731 6.5490 37 1 7.5544 -1.0652 5.8186 38 1 7.3807 0.6356 5.3232 39 1 10.8580 0.4064 6.5137 40 1 1.3790 -2.2011 3.3966 41 1 1.1952 -0.8033 4.4888 42 1 1.4614 0.7566 2.6148 43 1 0.1911 -0.4191 2.1977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:18 Heat of formation + Delta-G solvation = -166.370011 kcal Electronic energy + Delta-G solvation = -28309.553254 eV Core-core repulsion = 23782.254576 eV Total energy + Delta-G solvation = -4527.298679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.42918 -48.00554 -47.80131 -40.36577 -38.67531 -35.49536 -34.89589 -32.91297 -31.81706 -31.41925 -29.39989 -27.36948 -26.36415 -24.65733 -23.72039 -22.28080 -21.41977 -20.84715 -19.49128 -18.89584 -18.77426 -18.11573 -17.65448 -16.49700 -16.06453 -15.81323 -15.67439 -15.33788 -14.91368 -14.72771 -14.55706 -14.48510 -14.29914 -14.19944 -14.11003 -13.97258 -13.91330 -13.55930 -13.47938 -12.93716 -12.68050 -12.47948 -12.31091 -12.18718 -11.88247 -11.61395 -11.45678 -11.15983 -11.08251 -11.05455 -10.61923 -10.34251 -9.91262 -9.55713 -9.25449 -9.12514 -8.72288 -8.46845 -8.20834 -6.09861 -4.12424 2.31220 2.76401 3.09245 3.28151 3.35851 3.41084 3.41524 3.52300 3.61409 4.02096 4.17084 4.38731 4.42573 4.47444 4.56270 4.71111 4.90320 4.97494 5.00791 5.02559 5.10513 5.26031 5.27405 5.43155 5.49844 5.60166 5.64141 5.82475 6.18564 6.26874 6.38629 6.40477 6.53626 6.76010 6.97671 7.14794 7.54761 7.62044 7.89263 8.23066 8.34630 8.90584 8.95970 9.52463 11.01853 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002441 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.256737 B =11470.046150 C =12306.313689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.038 3.962 3 H 0.087 0.913 4 N -0.526 5.526 5 C 0.017 3.983 6 C 0.120 3.880 7 N -0.639 5.639 8 C 0.703 3.297 9 O -0.596 6.596 10 N -0.739 5.739 11 C 0.139 3.861 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.138 3.862 22 C 0.038 3.962 23 C 0.460 3.540 24 F -0.170 7.170 25 F -0.183 7.183 26 F -0.181 7.181 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.276 -1.700 -18.637 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.073 4.073 3 H 0.105 0.895 4 N -0.252 5.252 5 C -0.111 4.111 6 C -0.004 4.004 7 N -0.378 5.378 8 C 0.405 3.595 9 O -0.474 6.474 10 N -0.394 5.394 11 C 0.017 3.983 12 C -0.025 4.025 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.014 3.986 22 C -0.090 4.090 23 C 0.405 3.595 24 F -0.151 7.151 25 F -0.165 7.165 26 F -0.162 7.162 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.228 0.772 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.065 0.935 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.629 -2.096 -17.997 26.713 hybrid contribution 1.192 0.961 0.175 1.541 sum -18.437 -1.135 -17.822 25.668 Atomic orbital electron populations 1.22073 0.90738 1.04678 1.04205 1.22711 0.98881 0.96900 0.88782 0.89520 1.61852 1.04308 1.57029 1.02019 1.23034 0.87642 0.99469 1.00979 1.21650 0.94739 0.99876 0.84160 1.47350 1.06663 1.75489 1.08311 1.15960 0.82904 0.77920 0.82741 1.90877 1.62042 1.59435 1.35083 1.45708 1.04860 1.72427 1.16406 1.21603 0.95884 0.98349 0.82506 1.19328 0.87261 0.97734 0.98138 1.21083 0.92092 1.45917 0.96747 0.92164 1.24996 0.97293 0.95316 0.96721 1.69962 1.04909 1.49174 1.29282 0.86458 0.79266 0.78260 0.83590 1.19574 1.20930 1.20958 1.21562 0.79671 0.99812 0.97564 1.22836 0.98783 0.98326 0.89031 1.20479 0.75219 0.78362 0.85422 1.93201 1.91495 1.33998 1.96438 1.93176 1.84616 1.84502 1.54192 1.93087 1.30988 1.95905 1.96243 0.89770 0.90493 0.90109 0.93324 0.87678 0.89386 0.90451 0.77242 0.92653 0.92898 0.95961 0.96051 0.92909 0.91016 0.88248 0.93541 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 8.09 37.16 0.30 -0.49 16 2 C 0.04 0.26 2.28 -67.71 -0.15 0.11 16 3 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 4 N -0.53 -4.38 4.31 -226.04 -0.98 -5.35 16 5 C 0.02 0.15 5.38 -3.70 -0.02 0.13 16 6 C 0.12 1.26 6.59 -3.60 -0.02 1.24 16 7 N -0.64 -8.45 3.00 -177.91 -0.53 -8.99 16 8 C 0.70 12.46 8.31 -86.92 -0.72 11.73 16 9 O -0.60 -12.73 15.83 5.29 0.08 -12.64 16 10 N -0.74 -13.26 5.47 -65.23 -0.36 -13.62 16 11 C 0.14 3.00 5.62 -4.04 -0.02 2.98 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 17 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.14 1.49 6.61 -3.36 -0.02 1.47 16 22 C 0.04 0.31 4.98 -3.46 -0.02 0.29 16 23 C 0.46 3.82 2.78 37.16 0.10 3.92 16 24 F -0.17 -1.63 16.85 2.25 0.04 -1.59 16 25 F -0.18 -1.53 16.57 2.25 0.04 -1.49 16 26 F -0.18 -1.67 14.40 2.25 0.03 -1.64 16 27 H 0.08 0.34 6.20 -51.93 -0.32 0.01 16 28 H 0.08 0.33 7.67 -51.93 -0.40 -0.07 16 29 H 0.08 0.43 7.96 -51.92 -0.41 0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.92 5.17 -51.93 -0.27 0.65 16 32 H 0.09 0.91 5.64 -51.93 -0.29 0.62 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 6.15 5.97 -40.82 -0.24 5.90 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 1.21 7.09 -51.93 -0.37 0.84 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.57 5.74 -51.93 -0.30 0.27 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -32.41 351.53 -7.74 -40.15 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.95 Total: 0.47 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -1.13 Total: 8.37 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -1.13 Total: -53.28 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.11 Total: -4.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.41 -7.74 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.217 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds