Wall clock time and date at job start Tue Mar 31 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46825 * 2 1 4 4 N 1.46905 * 109.47226 * 119.99989 * 2 1 3 5 5 C 1.46896 * 110.99970 * 192.25129 * 4 2 1 6 6 C 1.53240 * 109.33591 * 187.25341 * 5 4 2 7 7 N 1.47080 * 108.52246 * 306.16291 * 6 5 4 8 8 C 1.34772 * 120.88163 * 231.19273 * 7 6 5 9 9 O 1.21588 * 119.99570 * 184.99048 * 8 7 6 10 10 N 1.34781 * 120.00268 * 4.98642 * 8 7 6 11 11 C 1.46497 * 119.99692 * 174.92381 * 10 8 7 12 12 C 1.53001 * 109.46866 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47198 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99736 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99765 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00400 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47153 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47118 * 119.99626 * 17 15 13 20 20 H 1.48498 * 109.47444 * 239.99788 * 17 15 13 21 21 C 1.47073 * 118.23385 * 51.46293 * 7 6 5 22 22 C 1.46905 * 110.99557 * 316.55101 * 4 2 1 23 23 C 1.52998 * 109.47132 * 239.99941 * 2 1 3 24 24 F 1.39901 * 109.46937 * 294.15320 * 23 2 1 25 25 F 1.39899 * 109.47373 * 54.15325 * 23 2 1 26 26 F 1.39898 * 109.47212 * 174.15845 * 23 2 1 27 27 H 1.09003 * 109.47289 * 299.99770 * 1 2 3 28 28 H 1.08999 * 109.47095 * 60.00244 * 1 2 3 29 29 H 1.09008 * 109.46956 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.49427 * 67.28952 * 5 4 2 31 31 H 1.08998 * 109.49114 * 307.20701 * 5 4 2 32 32 H 1.09007 * 109.62398 * 186.45477 * 6 5 4 33 33 H 1.08994 * 109.63228 * 65.88187 * 6 5 4 34 34 H 0.96994 * 119.99810 * 354.93526 * 10 8 7 35 35 H 1.09000 * 109.46977 * 60.00608 * 11 10 8 36 36 H 1.08996 * 109.47864 * 300.00655 * 11 10 8 37 37 H 1.09004 * 109.47078 * 300.00523 * 12 11 10 38 38 H 1.09000 * 109.47038 * 60.00386 * 12 11 10 39 39 H 0.96999 * 120.00336 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.63158 * 68.24804 * 21 7 6 41 41 H 1.08999 * 109.62922 * 188.83661 * 21 7 6 42 42 H 1.09002 * 109.48982 * 292.70161 * 22 4 2 43 43 H 1.08996 * 109.49812 * 52.78707 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4587 -0.4653 1.3879 6 6 3.9651 -1.3443 2.5365 7 7 3.1344 -1.0873 3.7227 8 6 3.6978 -0.7917 4.9108 9 8 3.0017 -0.6716 5.9005 10 7 5.0326 -0.6293 5.0020 11 6 5.6334 -0.1994 6.2670 12 6 7.1507 -0.0928 6.1007 13 6 7.7689 0.3489 7.4022 14 1 7.1423 0.5353 8.2618 15 6 9.1343 0.5159 7.4952 16 7 9.8973 0.2893 6.4482 17 14 9.9006 1.0640 9.1082 18 1 8.8342 1.2501 10.1248 19 1 10.8571 0.0300 9.5785 20 1 10.6197 2.3471 8.9038 21 6 1.6729 -1.1675 3.5793 22 6 1.2564 -0.2898 2.3883 23 6 2.0400 -0.7213 -1.2492 24 9 1.6866 -2.0733 -1.1840 25 9 1.4672 -0.1440 -2.3876 26 9 3.4325 -0.6061 -1.3183 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.6329 0.5834 1.6283 31 1 3.9905 -0.7220 0.4717 32 1 5.0037 -1.0970 2.7562 33 1 3.8874 -2.3945 2.2555 34 1 5.5954 -0.7970 4.2300 35 1 5.4031 -0.9276 7.0447 36 1 5.2300 0.7731 6.5490 37 1 7.5544 -1.0652 5.8186 38 1 7.3807 0.6356 5.3232 39 1 10.8580 0.4064 6.5137 40 1 1.3790 -2.2011 3.3966 41 1 1.1952 -0.8033 4.4888 42 1 1.4614 0.7566 2.6148 43 1 0.1911 -0.4191 2.1977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345815682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:17 Heat of formation + Delta-G solvation = -188.218963 kcal Electronic energy + Delta-G solvation = -28310.500696 eV Core-core repulsion = 23782.254576 eV Total energy + Delta-G solvation = -4528.246121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.09486 -48.67344 -48.48464 -41.50749 -39.66238 -36.73478 -36.36354 -34.84408 -32.60073 -32.43866 -31.07494 -28.06878 -27.38021 -26.32656 -24.60872 -23.28009 -22.83799 -21.96317 -20.63923 -19.71792 -19.43616 -19.10297 -18.51284 -18.37390 -17.25987 -16.90339 -16.69157 -16.44811 -16.12895 -15.79377 -15.45650 -15.41699 -15.27394 -15.21378 -15.01988 -14.90068 -14.74157 -14.64836 -14.46630 -14.28001 -13.79034 -13.60766 -13.20772 -13.05955 -12.95223 -12.83234 -12.53193 -12.50550 -12.35826 -12.25843 -12.22071 -11.79566 -11.66243 -11.44772 -11.14098 -10.61055 -10.22423 -9.79392 -9.41008 -8.24061 -6.34227 1.41286 1.42175 1.54498 1.59487 1.72507 2.08877 2.39157 2.42495 2.81196 2.95473 3.03326 3.10867 3.39364 3.70840 3.83023 3.90841 4.01902 4.15750 4.19311 4.29683 4.43084 4.48658 4.51326 4.59849 4.66865 4.72313 4.79961 4.83760 4.86153 5.00659 5.17019 5.29427 5.43325 5.51399 5.58290 5.58637 5.73776 5.79122 5.94124 6.17011 6.78934 6.94684 7.35141 7.52788 8.88074 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002441 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.256737 B =11470.046150 C =12306.313689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.041 3.959 3 H 0.097 0.903 4 N -0.531 5.531 5 C 0.023 3.977 6 C 0.116 3.884 7 N -0.630 5.630 8 C 0.701 3.299 9 O -0.636 6.636 10 N -0.735 5.735 11 C 0.161 3.839 12 C 0.025 3.975 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.132 3.868 22 C 0.048 3.952 23 C 0.458 3.542 24 F -0.179 7.179 25 F -0.184 7.184 26 F -0.188 7.188 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.403 0.597 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.007 0.993 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.192 -1.389 -19.278 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.069 4.069 3 H 0.115 0.885 4 N -0.257 5.257 5 C -0.106 4.106 6 C -0.007 4.007 7 N -0.368 5.368 8 C 0.402 3.598 9 O -0.518 6.518 10 N -0.392 5.392 11 C 0.036 3.964 12 C -0.013 4.013 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.202 1.202 21 C 0.009 3.991 22 C -0.080 4.080 23 C 0.403 3.597 24 F -0.160 7.160 25 F -0.165 7.165 26 F -0.170 7.170 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.241 0.759 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.568 -1.799 -18.705 27.859 hybrid contribution 1.441 0.820 0.270 1.679 sum -19.127 -0.980 -18.435 26.583 Atomic orbital electron populations 1.22107 0.89039 1.04942 1.05377 1.22793 1.00151 0.96821 0.87176 0.88491 1.61801 1.03725 1.57574 1.02570 1.22946 0.88514 0.98726 1.00368 1.21840 0.94427 1.00934 0.83515 1.47410 1.08031 1.73886 1.07476 1.16066 0.82319 0.77801 0.83595 1.90845 1.62752 1.61236 1.36938 1.45418 1.05468 1.72697 1.15610 1.21077 0.93877 0.97600 0.83808 1.19122 0.89157 0.96248 0.96757 1.21478 0.92778 1.46296 0.97771 0.92302 1.25862 0.97786 0.95208 1.00299 1.70060 1.05368 1.49860 1.31295 0.85394 0.78351 0.78014 0.79268 1.18978 1.20257 1.20188 1.21769 0.77871 1.01139 0.98285 1.22784 1.00241 0.97199 0.87752 1.20730 0.74886 0.78101 0.85997 1.93184 1.91530 1.34780 1.96501 1.93174 1.84556 1.84430 1.54349 1.93070 1.31695 1.95907 1.96302 0.88420 0.89554 0.90270 0.93795 0.87036 0.89467 0.89372 0.75901 0.93897 0.93783 0.97421 0.97306 0.92542 0.89855 0.89725 0.94021 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.09 71.98 0.58 -0.52 16 2 C 0.04 0.46 2.28 44.91 0.10 0.57 16 3 H 0.10 0.96 8.05 -2.39 -0.02 0.94 16 4 N -0.53 -7.64 4.31 -869.07 -3.75 -11.39 16 5 C 0.02 0.38 5.38 86.38 0.46 0.84 16 6 C 0.12 2.31 6.59 86.35 0.57 2.88 16 7 N -0.63 -16.18 3.00 -835.05 -2.51 -18.68 16 8 C 0.70 24.86 8.31 179.05 1.49 26.34 16 9 O -0.64 -27.53 15.83 -3.99 -0.06 -27.59 16 10 N -0.74 -26.63 5.47 -478.54 -2.62 -29.25 16 11 C 0.16 7.07 5.62 86.38 0.49 7.56 16 12 C 0.02 1.25 5.09 29.85 0.15 1.40 16 13 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 17 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.13 2.68 6.61 86.51 0.57 3.26 16 22 C 0.05 0.66 4.98 86.54 0.43 1.09 16 23 C 0.46 6.78 2.78 71.98 0.20 6.98 16 24 F -0.18 -3.13 16.85 44.97 0.76 -2.37 16 25 F -0.18 -2.74 16.57 44.97 0.75 -2.00 16 26 F -0.19 -3.21 14.40 44.97 0.65 -2.56 16 27 H 0.10 0.44 6.20 -2.39 -0.01 0.42 16 28 H 0.09 0.48 7.67 -2.39 -0.02 0.47 16 29 H 0.08 0.62 7.96 -2.38 -0.02 0.60 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.77 5.17 -2.39 -0.01 1.75 16 32 H 0.09 1.74 5.64 -2.38 -0.01 1.73 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.40 12.67 5.97 -92.71 -0.55 12.12 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 39 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 2.01 7.09 -2.39 -0.02 1.99 16 42 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.13 1.06 5.74 -2.39 -0.01 1.05 16 Total: -1.00 -69.39 351.53 1.76 -67.64 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.49 Total: 13.48 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.74 Total: 20.96 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -8.59 Total: -113.23 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 2.15 Total: -6.93 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.39 1.76 -67.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.583 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds