Wall clock time and date at job start Tue Mar 31 2020 13:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47035 * 2 1 4 4 H 1.09004 * 109.46859 * 55.00629 * 3 2 1 5 5 C 1.52992 * 109.47035 * 295.00065 * 3 2 1 6 6 N 1.46498 * 109.46499 * 175.00062 * 3 2 1 7 7 N 1.28470 * 124.87942 * 59.70395 * 6 3 2 8 8 C 1.31867 * 110.05926 * 179.81660 * 7 6 3 9 9 C 1.47606 * 126.52268 * 180.13505 * 8 7 6 10 10 O 1.21606 * 120.00285 * 175.79891 * 9 8 7 11 11 N 1.34779 * 119.99721 * 355.79578 * 9 8 7 12 12 C 1.36912 * 120.00435 * 4.97139 * 11 9 8 13 13 H 1.08000 * 119.99396 * 33.30286 * 12 11 9 14 14 C 1.39016 * 120.00152 * 213.30180 * 12 11 9 15 15 N 1.31382 * 120.00173 * 5.44312 * 14 12 11 16 16 Si 1.86798 * 120.00033 * 185.44010 * 14 12 11 17 17 H 1.48495 * 109.47199 * 90.00249 * 16 14 12 18 18 H 1.48503 * 109.47066 * 210.00505 * 16 14 12 19 19 H 1.48507 * 109.46900 * 330.00198 * 16 14 12 20 20 C 1.46505 * 119.99792 * 184.96871 * 11 9 8 21 21 C 1.50706 * 109.46740 * 83.01953 * 20 11 9 22 22 O 1.20818 * 120.00187 * 359.97438 * 21 20 11 23 23 O 1.34230 * 119.99774 * 179.97438 * 21 20 11 24 24 C 1.45198 * 117.00154 * 180.02562 * 23 21 20 25 25 C 1.41543 * 106.95119 * 0.42905 * 8 7 6 26 26 C 1.35050 * 124.87736 * 239.99661 * 6 3 2 27 27 C 1.50692 * 126.38176 * 0.02796 * 26 6 3 28 28 H 1.09009 * 109.46710 * 299.99770 * 1 2 3 29 29 H 1.08998 * 109.46877 * 59.99481 * 1 2 3 30 30 H 1.08995 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46877 * 120.00519 * 2 1 3 32 32 H 1.08999 * 109.46658 * 240.00392 * 2 1 3 33 33 H 1.09000 * 109.46769 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.47881 * 299.99963 * 5 3 2 35 35 H 1.08998 * 109.47457 * 60.00391 * 5 3 2 36 36 H 0.96999 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47144 * 203.01976 * 20 11 9 38 38 H 1.08998 * 109.46951 * 323.02140 * 20 11 9 39 39 H 1.08998 * 109.46976 * 59.99815 * 24 23 21 40 40 H 1.08998 * 109.46914 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.46906 * 300.00068 * 24 23 21 42 42 H 1.08000 * 127.24808 * 179.74895 * 25 8 7 43 43 H 1.09008 * 109.47019 * 89.99772 * 27 26 6 44 44 H 1.09004 * 109.47756 * 209.99442 * 27 26 6 45 45 H 1.08998 * 109.47365 * 329.99922 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1204 7 7 4.3063 0.8871 -0.7103 8 6 5.5533 1.0704 -0.3225 9 6 6.7670 0.5871 -1.0096 10 8 7.8663 0.8898 -0.5869 11 7 6.6568 -0.1898 -2.1054 12 6 5.4234 -0.4471 -2.6410 13 1 4.6472 0.3024 -2.5937 14 6 5.1701 -1.6729 -3.2457 15 7 6.0768 -2.6231 -3.2095 16 14 3.5407 -1.9693 -4.1097 17 1 3.6567 -1.5707 -5.5354 18 1 3.1905 -3.4100 -4.0253 19 1 2.4794 -1.1628 -3.4549 20 6 7.8570 -0.7589 -2.7235 21 6 8.2481 -2.0187 -1.9946 22 8 7.5920 -2.4015 -1.0551 23 8 9.3254 -2.7154 -2.3893 24 6 9.6423 -3.9189 -1.6414 25 6 5.5060 1.8129 0.8816 26 6 4.1916 2.0267 1.1235 27 6 3.6084 2.7748 2.2944 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.9982 3.1543 -1.3070 34 1 2.0698 1.5876 -2.1491 35 1 0.5490 2.1253 -1.3968 36 1 5.8999 -3.4786 -3.6311 37 1 7.6518 -0.9924 -3.7682 38 1 8.6722 -0.0377 -2.6657 39 1 8.8055 -4.6148 -1.7011 40 1 10.5333 -4.3845 -2.0628 41 1 9.8264 -3.6607 -0.5986 42 1 6.3427 2.1401 1.4811 43 1 3.4248 2.0803 3.1144 44 1 4.3091 3.5439 2.6198 45 1 2.6695 3.2414 1.9964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349458438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:14 Heat of formation + Delta-G solvation = -29.199500 kcal Electronic energy + Delta-G solvation = -29160.276862 eV Core-core repulsion = 25180.783083 eV Total energy + Delta-G solvation = -3979.493779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97322 -39.25253 -37.95774 -36.20229 -35.23658 -34.41327 -32.30477 -31.42025 -31.23046 -29.02487 -28.26946 -26.63169 -26.09528 -25.07860 -24.38094 -22.52758 -20.58756 -20.23238 -19.63953 -18.63499 -17.29035 -16.43850 -16.19846 -15.65523 -15.47117 -15.28527 -15.08731 -14.98224 -14.27489 -14.13681 -13.73310 -13.63089 -13.28245 -13.00661 -12.83232 -12.79105 -12.42120 -12.35182 -12.25926 -12.04333 -11.95179 -11.73589 -11.47397 -11.42228 -11.18467 -11.16883 -10.91342 -10.84437 -10.75978 -10.56685 -10.32873 -9.69353 -9.61219 -9.19443 -8.91266 -8.70176 -8.28045 -8.20814 -7.64686 -6.34418 -3.92084 2.52053 2.83536 3.00891 3.19843 3.23067 3.27287 3.76928 3.87610 4.19813 4.54749 4.61532 4.75692 4.85678 4.95690 5.05876 5.18666 5.23652 5.28697 5.35868 5.49082 5.59747 5.62874 5.68675 5.78251 5.84722 5.87036 5.93303 5.97072 6.04910 6.05317 6.21060 6.29316 6.31504 6.37638 6.44881 6.53102 6.59239 6.69782 7.22345 7.43910 7.60419 7.67529 7.81316 8.53535 8.80434 9.15144 9.29581 9.50815 9.88879 10.74264 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.005381 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.258679 B = 5201.812119 C = 6649.930784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.153 3.847 4 H 0.098 0.902 5 C -0.164 4.164 6 N -0.295 5.295 7 N -0.222 5.222 8 C 0.022 3.978 9 C 0.550 3.450 10 O -0.599 6.599 11 N -0.416 5.416 12 C -0.310 4.310 13 H 0.122 0.878 14 C 0.038 3.962 15 N -0.875 5.875 16 Si 0.926 3.074 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.159 3.841 21 C 0.485 3.515 22 O -0.492 6.492 23 O -0.379 6.379 24 C 0.045 3.955 25 C -0.191 4.191 26 C -0.014 4.014 27 C -0.077 4.077 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.269 0.731 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 5.602 4.117 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.116 0.884 5 C -0.221 4.221 6 N -0.084 5.084 7 N -0.055 5.055 8 C -0.138 4.138 9 C 0.339 3.661 10 O -0.484 6.484 11 N -0.133 5.133 12 C -0.439 4.439 13 H 0.139 0.861 14 C -0.166 4.166 15 N -0.513 5.513 16 Si 0.753 3.247 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.191 1.191 20 C 0.034 3.966 21 C 0.325 3.675 22 O -0.375 6.375 23 O -0.297 6.297 24 C -0.049 4.049 25 C -0.219 4.219 26 C -0.137 4.137 27 C -0.135 4.135 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.167 0.833 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.467 4.918 3.700 10.467 hybrid contribution -0.426 -0.487 0.354 0.738 sum -8.893 4.431 4.054 10.731 Atomic orbital electron populations 1.21785 0.94761 1.02291 1.01783 1.21891 0.96063 0.94982 1.04510 1.21417 0.74969 0.98338 1.00089 0.88412 1.22181 1.01818 1.00898 0.97248 1.45922 1.06771 1.38691 1.16974 1.74236 1.00497 1.15066 1.15671 1.21852 0.91466 1.03359 0.97130 1.17055 0.86025 0.83025 0.79981 1.90616 1.26643 1.64145 1.66959 1.43155 1.06160 1.41650 1.22381 1.20149 0.89336 1.00286 1.34130 0.86081 1.25431 0.98671 0.94573 0.97953 1.69617 1.34705 1.04575 1.42440 0.85937 0.82158 0.77465 0.79119 1.20495 1.21235 1.19098 1.20384 0.88763 0.89505 0.97970 1.23758 0.76098 0.85343 0.82271 1.90512 1.50269 1.67932 1.28794 1.86443 1.47334 1.37324 1.58569 1.22888 1.00267 0.85935 0.95835 1.21391 0.95115 1.06039 0.99392 1.21204 0.92247 1.04995 0.95280 1.20228 1.00529 0.98998 0.93729 0.92758 0.92129 0.92131 0.91390 0.89592 0.92157 0.90368 0.90743 0.92030 0.86641 0.89959 0.92712 0.89787 0.93277 0.83265 0.91198 0.90247 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.14 -1.87 5.57 -26.73 -0.15 -2.02 16 3 C 0.15 2.05 3.02 -67.93 -0.21 1.85 16 4 H 0.10 1.01 6.55 -51.93 -0.34 0.67 16 5 C -0.16 -2.03 9.13 37.15 0.34 -1.69 16 6 N -0.29 -5.25 3.04 -50.67 -0.15 -5.41 16 7 N -0.22 -4.93 8.34 33.41 0.28 -4.65 16 8 C 0.02 0.54 6.86 -82.77 -0.57 -0.03 16 9 C 0.55 14.85 7.37 -12.44 -0.09 14.76 16 10 O -0.60 -16.94 16.60 5.27 0.09 -16.86 16 11 N -0.42 -11.12 2.15 -117.25 -0.25 -11.37 16 12 C -0.31 -8.16 8.21 -14.99 -0.12 -8.28 16 13 H 0.12 3.13 5.62 -52.49 -0.29 2.84 16 14 C 0.04 0.99 5.16 -17.46 -0.09 0.90 16 15 N -0.87 -23.63 8.71 55.50 0.48 -23.14 16 16 Si 0.93 20.26 29.56 -169.99 -5.02 15.24 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C 0.16 3.97 5.17 -5.19 -0.03 3.95 16 21 C 0.48 12.54 5.98 36.01 0.22 12.75 16 22 O -0.49 -14.33 15.08 -18.74 -0.28 -14.61 16 23 O -0.38 -8.51 10.57 -39.26 -0.41 -8.92 16 24 C 0.05 0.83 10.56 101.05 1.07 1.90 16 25 C -0.19 -3.89 10.73 -39.35 -0.42 -4.31 16 26 C -0.01 -0.24 6.92 -82.21 -0.57 -0.81 16 27 C -0.08 -0.86 9.92 36.00 0.36 -0.50 16 28 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.70 6.56 -51.93 -0.34 0.36 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.12 2.80 7.06 -51.93 -0.37 2.43 16 38 H 0.08 1.91 7.57 -51.93 -0.39 1.52 16 39 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.89 8.13 -51.93 -0.42 0.46 16 42 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 43 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.57 7.02 -51.93 -0.36 0.21 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -34.60 372.48 -6.22 -40.83 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.65 Total: 5.95 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 0.09 Total: 17.33 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.36 Total: -44.57 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.61 Total: -40.38 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.60 -6.22 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349458438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.626 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds