Wall clock time and date at job start Tue Mar 31 2020 13:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47035 * 2 1 4 4 H 1.09004 * 109.46859 * 55.00629 * 3 2 1 5 5 C 1.52992 * 109.47035 * 295.00065 * 3 2 1 6 6 N 1.46498 * 109.46499 * 175.00062 * 3 2 1 7 7 N 1.28470 * 124.87942 * 59.70395 * 6 3 2 8 8 C 1.31867 * 110.05926 * 179.81660 * 7 6 3 9 9 C 1.47606 * 126.52268 * 180.13505 * 8 7 6 10 10 O 1.21606 * 120.00285 * 175.79891 * 9 8 7 11 11 N 1.34779 * 119.99721 * 355.79578 * 9 8 7 12 12 C 1.36912 * 120.00435 * 4.97139 * 11 9 8 13 13 H 1.08000 * 119.99396 * 33.30286 * 12 11 9 14 14 C 1.39016 * 120.00152 * 213.30180 * 12 11 9 15 15 N 1.31382 * 120.00173 * 5.44312 * 14 12 11 16 16 Si 1.86798 * 120.00033 * 185.44010 * 14 12 11 17 17 H 1.48495 * 109.47199 * 90.00249 * 16 14 12 18 18 H 1.48503 * 109.47066 * 210.00505 * 16 14 12 19 19 H 1.48507 * 109.46900 * 330.00198 * 16 14 12 20 20 C 1.46505 * 119.99792 * 184.96871 * 11 9 8 21 21 C 1.50706 * 109.46740 * 83.01953 * 20 11 9 22 22 O 1.20818 * 120.00187 * 359.97438 * 21 20 11 23 23 O 1.34230 * 119.99774 * 179.97438 * 21 20 11 24 24 C 1.45198 * 117.00154 * 180.02562 * 23 21 20 25 25 C 1.41543 * 106.95119 * 0.42905 * 8 7 6 26 26 C 1.35050 * 124.87736 * 239.99661 * 6 3 2 27 27 C 1.50692 * 126.38176 * 0.02796 * 26 6 3 28 28 H 1.09009 * 109.46710 * 299.99770 * 1 2 3 29 29 H 1.08998 * 109.46877 * 59.99481 * 1 2 3 30 30 H 1.08995 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46877 * 120.00519 * 2 1 3 32 32 H 1.08999 * 109.46658 * 240.00392 * 2 1 3 33 33 H 1.09000 * 109.46769 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.47881 * 299.99963 * 5 3 2 35 35 H 1.08998 * 109.47457 * 60.00391 * 5 3 2 36 36 H 0.96999 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47144 * 203.01976 * 20 11 9 38 38 H 1.08998 * 109.46951 * 323.02140 * 20 11 9 39 39 H 1.08998 * 109.46976 * 59.99815 * 24 23 21 40 40 H 1.08998 * 109.46914 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.46906 * 300.00068 * 24 23 21 42 42 H 1.08000 * 127.24808 * 179.74895 * 25 8 7 43 43 H 1.09008 * 109.47019 * 89.99772 * 27 26 6 44 44 H 1.09004 * 109.47756 * 209.99442 * 27 26 6 45 45 H 1.08998 * 109.47365 * 329.99922 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 7 3.5001 1.4442 0.1204 7 7 4.3063 0.8871 -0.7103 8 6 5.5533 1.0704 -0.3225 9 6 6.7670 0.5871 -1.0096 10 8 7.8663 0.8898 -0.5869 11 7 6.6568 -0.1898 -2.1054 12 6 5.4234 -0.4471 -2.6410 13 1 4.6472 0.3024 -2.5937 14 6 5.1701 -1.6729 -3.2457 15 7 6.0768 -2.6231 -3.2095 16 14 3.5407 -1.9693 -4.1097 17 1 3.6567 -1.5707 -5.5354 18 1 3.1905 -3.4100 -4.0253 19 1 2.4794 -1.1628 -3.4549 20 6 7.8570 -0.7589 -2.7235 21 6 8.2481 -2.0187 -1.9946 22 8 7.5920 -2.4015 -1.0551 23 8 9.3254 -2.7154 -2.3893 24 6 9.6423 -3.9189 -1.6414 25 6 5.5060 1.8129 0.8816 26 6 4.1916 2.0267 1.1235 27 6 3.6084 2.7748 2.2944 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.9982 3.1543 -1.3070 34 1 2.0698 1.5876 -2.1491 35 1 0.5490 2.1253 -1.3968 36 1 5.8999 -3.4786 -3.6311 37 1 7.6518 -0.9924 -3.7682 38 1 8.6722 -0.0377 -2.6657 39 1 8.8055 -4.6148 -1.7011 40 1 10.5333 -4.3845 -2.0628 41 1 9.8264 -3.6607 -0.5986 42 1 6.3427 2.1401 1.4811 43 1 3.4248 2.0803 3.1144 44 1 4.3091 3.5439 2.6198 45 1 2.6695 3.2414 1.9964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349458438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:13 Heat of formation + Delta-G solvation = -50.778931 kcal Electronic energy + Delta-G solvation = -29161.212617 eV Core-core repulsion = 25180.783083 eV Total energy + Delta-G solvation = -3980.429533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47045 -41.23736 -39.91467 -37.40592 -37.16276 -36.46005 -33.67654 -33.36246 -32.53455 -30.52954 -29.73579 -28.04972 -27.56236 -26.90910 -25.69832 -24.06558 -22.08777 -21.85330 -21.35757 -20.32856 -19.04241 -18.41131 -17.69949 -17.46428 -17.27423 -16.88397 -16.76430 -16.21752 -16.09860 -15.94862 -15.22694 -14.98388 -14.79468 -14.49182 -14.22190 -14.03635 -13.90005 -13.79540 -13.48293 -13.34481 -13.20410 -13.06595 -13.00237 -12.90492 -12.74484 -12.68172 -12.52487 -12.44806 -12.15343 -11.88330 -11.71562 -11.54632 -11.46583 -11.10752 -10.93721 -10.69377 -9.90003 -9.66334 -9.62794 -8.33531 -5.97620 0.85122 1.28547 1.40320 1.44973 1.54308 1.72111 1.80838 2.02405 2.33763 2.69217 2.88929 3.21157 3.48023 3.81309 3.86255 3.96181 4.07539 4.23858 4.28939 4.35437 4.38780 4.42234 4.43211 4.49642 4.60512 4.61963 4.68675 4.72925 4.80829 4.81559 4.87453 4.93834 5.05831 5.10185 5.12686 5.17795 5.31902 5.38876 5.50038 5.66360 5.68385 5.80381 6.18006 6.52610 7.05251 7.22316 7.32450 7.53109 7.86683 8.74424 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.005381 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.258679 B = 5201.812119 C = 6649.930784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.142 3.858 4 H 0.145 0.855 5 C -0.160 4.160 6 N -0.287 5.287 7 N -0.244 5.244 8 C -0.024 4.024 9 C 0.534 3.466 10 O -0.628 6.628 11 N -0.426 5.426 12 C -0.321 4.321 13 H 0.122 0.878 14 C -0.004 4.004 15 N -0.899 5.899 16 Si 0.989 3.011 17 H -0.265 1.265 18 H -0.291 1.291 19 H -0.257 1.257 20 C 0.155 3.845 21 C 0.489 3.511 22 O -0.532 6.532 23 O -0.377 6.377 24 C 0.040 3.960 25 C -0.222 4.222 26 C 0.013 3.987 27 C -0.075 4.075 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.111 0.889 36 H 0.267 0.733 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.135 0.865 41 H 0.048 0.952 42 H 0.151 0.849 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 6.743 5.033 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.043 3.957 4 H 0.162 0.838 5 C -0.217 4.217 6 N -0.077 5.077 7 N -0.078 5.078 8 C -0.182 4.182 9 C 0.325 3.675 10 O -0.516 6.516 11 N -0.143 5.143 12 C -0.450 4.450 13 H 0.139 0.861 14 C -0.205 4.205 15 N -0.538 5.538 16 Si 0.812 3.188 17 H -0.190 1.190 18 H -0.217 1.217 19 H -0.181 1.181 20 C 0.030 3.970 21 C 0.331 3.669 22 O -0.420 6.420 23 O -0.295 6.295 24 C -0.053 4.053 25 C -0.250 4.250 26 C -0.111 4.111 27 C -0.133 4.133 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.136 0.864 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.153 0.847 41 H 0.067 0.933 42 H 0.169 0.831 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.426 6.059 4.584 13.721 hybrid contribution 0.495 -0.852 0.140 0.995 sum -10.931 5.207 4.723 12.996 Atomic orbital electron populations 1.21763 0.91346 1.02989 1.03752 1.21852 0.98940 0.94645 1.01818 1.21997 0.72334 0.98839 1.02551 0.83778 1.22179 1.03992 1.00338 0.95210 1.46418 1.08217 1.36918 1.16134 1.74069 1.00339 1.16048 1.17388 1.21728 0.91348 1.06089 0.99068 1.17620 0.86967 0.82911 0.80019 1.90546 1.27924 1.65301 1.67803 1.43365 1.06743 1.41614 1.22572 1.20330 0.89480 1.00794 1.34361 0.86104 1.26261 1.01907 0.94029 0.98342 1.69738 1.36250 1.04710 1.43109 0.84986 0.78318 0.76875 0.78579 1.19035 1.21730 1.18120 1.20476 0.88901 0.89720 0.97922 1.23830 0.76179 0.85462 0.81413 1.90479 1.51863 1.69080 1.30540 1.86407 1.45716 1.38541 1.58808 1.23258 1.01877 0.84113 0.96091 1.21582 0.97272 1.07230 0.98936 1.21951 0.90938 1.02680 0.95573 1.20483 1.02076 0.99225 0.91509 0.89873 0.90962 0.92226 0.92715 0.93760 0.91608 0.93841 0.87041 0.92320 0.86425 0.88982 0.93809 0.84667 0.93340 0.83101 0.89326 0.88658 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.67 71.98 0.70 -1.61 16 2 C -0.13 -3.46 5.57 30.60 0.17 -3.29 16 3 C 0.14 3.38 3.02 44.99 0.14 3.51 16 4 H 0.14 2.15 6.55 -2.38 -0.02 2.13 16 5 C -0.16 -3.53 9.13 71.98 0.66 -2.87 16 6 N -0.29 -9.92 3.04 -314.21 -0.96 -10.87 16 7 N -0.24 -11.12 8.34 -48.20 -0.40 -11.52 16 8 C -0.02 -1.20 6.86 42.43 0.29 -0.90 16 9 C 0.53 30.51 7.37 86.72 0.64 31.15 16 10 O -0.63 -37.62 16.60 -4.05 -0.07 -37.69 16 11 N -0.43 -23.95 2.15 -643.11 -1.39 -25.34 16 12 C -0.32 -17.62 8.21 84.09 0.69 -16.93 16 13 H 0.12 6.53 5.62 -2.91 -0.02 6.51 16 14 C 0.00 -0.22 5.16 84.95 0.44 0.22 16 15 N -0.90 -50.10 8.71 21.68 0.19 -49.91 16 16 Si 0.99 42.34 29.56 68.60 2.03 44.37 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 C 0.16 8.12 5.17 85.63 0.44 8.56 16 21 C 0.49 26.27 5.98 71.24 0.43 26.69 16 22 O -0.53 -32.45 15.08 21.99 0.33 -32.12 16 23 O -0.38 -17.21 10.57 -51.42 -0.54 -17.76 16 24 C 0.04 1.46 10.56 113.37 1.20 2.66 16 25 C -0.22 -9.20 10.73 22.42 0.24 -8.96 16 26 C 0.01 0.41 6.92 41.39 0.29 0.70 16 27 C -0.08 -1.35 9.92 71.23 0.71 -0.64 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 1.03 6.56 -2.39 -0.02 1.01 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.62 6.56 -2.39 -0.02 1.60 16 36 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.12 5.98 7.06 -2.39 -0.02 5.96 16 38 H 0.09 4.51 7.57 -2.39 -0.02 4.50 16 39 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 40 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 42 H 0.15 5.97 8.06 -2.91 -0.02 5.94 16 43 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.09 1.14 7.02 -2.39 -0.02 1.12 16 Total: -1.00 -81.96 372.48 7.21 -74.75 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 1.00 Total: 27.79 kcal Atomic # 6 Polarization: 31.27 SS G_CDS: 7.02 Total: 38.29 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -2.55 Total: -97.64 kcal Atomic # 8 Polarization: -87.29 SS G_CDS: -0.28 Total: -87.57 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -81.96 7.21 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349458438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.974 kcal (2) G-P(sol) polarization free energy of solvation -81.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds