Wall clock time and date at job start Tue Mar 31 2020 13:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 H 1.08999 * 109.47250 * 305.00293 * 3 2 1 5 5 C 1.52997 * 109.47207 * 65.00171 * 3 2 1 6 6 N 1.46501 * 109.47065 * 185.00073 * 3 2 1 7 7 N 1.28464 * 124.88250 * 300.31369 * 6 3 2 8 8 C 1.31861 * 110.06398 * 180.18023 * 7 6 3 9 9 C 1.47610 * 126.52500 * 179.81849 * 8 7 6 10 10 O 1.21604 * 120.00237 * 184.42202 * 9 8 7 11 11 N 1.34776 * 119.99900 * 4.43015 * 9 8 7 12 12 C 1.36919 * 120.00066 * 354.71108 * 11 9 8 13 13 H 1.07999 * 119.99650 * 325.83199 * 12 11 9 14 14 C 1.39022 * 119.99903 * 145.54964 * 12 11 9 15 15 N 1.31377 * 119.99736 * 5.16412 * 14 12 11 16 16 Si 1.86796 * 119.99905 * 185.16016 * 14 12 11 17 17 H 1.48501 * 109.47229 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47250 * 120.00531 * 16 14 12 19 19 H 1.48503 * 109.46857 * 240.00315 * 16 14 12 20 20 C 1.46503 * 120.00181 * 174.71902 * 11 9 8 21 21 C 1.50701 * 109.47001 * 276.66502 * 20 11 9 22 22 O 1.20825 * 119.99835 * 0.02562 * 21 20 11 23 23 O 1.34226 * 120.00124 * 179.97438 * 21 20 11 24 24 C 1.45197 * 117.00283 * 180.02562 * 23 21 20 25 25 C 1.41542 * 106.95286 * 359.56462 * 8 7 6 26 26 C 1.35051 * 124.87867 * 120.00363 * 6 3 2 27 27 C 1.50704 * 126.38024 * 359.97438 * 26 6 3 28 28 H 1.09001 * 109.47269 * 299.99927 * 1 2 3 29 29 H 1.09004 * 109.47373 * 59.99802 * 1 2 3 30 30 H 1.08997 * 109.47570 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47040 * 240.00572 * 2 1 3 32 32 H 1.08994 * 109.47340 * 120.00060 * 2 1 3 33 33 H 1.08998 * 109.47252 * 299.99974 * 5 3 2 34 34 H 1.09009 * 109.46822 * 59.99859 * 5 3 2 35 35 H 1.09000 * 109.48021 * 179.97438 * 5 3 2 36 36 H 0.97005 * 119.99684 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.46811 * 36.66499 * 20 11 9 38 38 H 1.09004 * 109.47084 * 156.66707 * 20 11 9 39 39 H 1.08999 * 109.47037 * 59.99558 * 24 23 21 40 40 H 1.08997 * 109.47101 * 180.02562 * 24 23 21 41 41 H 1.09008 * 109.46944 * 299.99987 * 24 23 21 42 42 H 1.08001 * 127.25054 * 180.26185 * 25 8 7 43 43 H 1.08993 * 109.46955 * 270.00030 * 27 26 6 44 44 H 1.09002 * 109.46725 * 30.00231 * 27 26 6 45 45 H 1.09003 * 109.47183 * 149.99952 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 7 3.5000 1.4442 -0.1204 7 7 4.3063 0.8870 0.7100 8 6 5.5532 1.0704 0.3223 9 6 6.7670 0.5878 1.0096 10 8 7.8662 0.8939 0.5892 11 7 6.6571 -0.1924 2.1031 12 6 5.4239 -0.4484 2.6402 13 1 4.6538 0.3081 2.6092 14 6 5.1614 -1.6843 3.2202 15 7 6.1242 -2.5694 3.3444 16 14 3.4396 -2.0863 3.8230 17 1 2.5435 -0.9298 3.5686 18 1 2.9273 -3.2775 3.0993 19 1 3.4792 -2.3713 5.2798 20 6 7.8570 -0.7663 2.7173 21 6 8.2394 -2.0288 1.9886 22 8 7.5777 -2.4097 1.0521 23 8 9.3155 -2.7295 2.3793 24 6 9.6245 -3.9348 1.6311 25 6 5.5059 1.8131 -0.8817 26 6 4.1915 2.0268 -1.1236 27 6 3.6082 2.7750 -2.2945 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 0.5489 2.1252 1.3970 34 1 2.0699 1.5874 2.1492 35 1 1.9989 3.1541 1.3077 36 1 5.9411 -3.4317 3.7494 37 1 8.6753 -0.0490 2.6553 38 1 7.6547 -0.9975 3.7631 39 1 9.8052 -3.6782 0.5872 40 1 10.5148 -4.4040 2.0497 41 1 8.7851 -4.6273 1.6949 42 1 6.3426 2.1403 -1.4813 43 1 3.4246 2.0807 -3.1143 44 1 2.6692 3.2415 -1.9963 45 1 4.3088 3.5442 -2.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349458439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:16 Heat of formation + Delta-G solvation = -51.344820 kcal Electronic energy + Delta-G solvation = -29181.510400 eV Core-core repulsion = 25201.056328 eV Total energy + Delta-G solvation = -3980.454072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47300 -41.26115 -39.92948 -37.41612 -37.18053 -36.48707 -33.68276 -33.35935 -32.53671 -30.53564 -29.74026 -28.05680 -27.56685 -26.90412 -25.69703 -24.06897 -22.09864 -21.85595 -21.36724 -20.34702 -19.05045 -18.42389 -17.71143 -17.47649 -17.28854 -16.89934 -16.77007 -16.22095 -16.09391 -15.94759 -15.25003 -14.98392 -14.80729 -14.49697 -14.23064 -14.04920 -13.90129 -13.79582 -13.47957 -13.32351 -13.20168 -13.08916 -13.04683 -12.94213 -12.77375 -12.69350 -12.52620 -12.44680 -12.12308 -11.87346 -11.71670 -11.57434 -11.49412 -11.14215 -10.90710 -10.69837 -9.91209 -9.66510 -9.64566 -8.37445 -5.99049 0.84636 1.28252 1.37807 1.42759 1.53943 1.71863 1.77566 2.01360 2.32208 2.69192 2.88851 3.19789 3.47523 3.80997 3.86210 3.95743 4.07295 4.23877 4.28741 4.34649 4.38529 4.40878 4.42861 4.50228 4.61275 4.64669 4.69330 4.74654 4.81176 4.82156 4.88035 4.94045 5.05761 5.10200 5.12261 5.17865 5.31692 5.38645 5.49433 5.64785 5.67420 5.80459 6.17940 6.51468 7.04637 7.20688 7.29307 7.52420 7.85615 8.71624 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.005397 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.700919 B = 5186.538463 C = 6623.522983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.142 3.858 4 H 0.145 0.855 5 C -0.160 4.160 6 N -0.287 5.287 7 N -0.244 5.244 8 C -0.024 4.024 9 C 0.535 3.465 10 O -0.628 6.628 11 N -0.428 5.428 12 C -0.318 4.318 13 H 0.121 0.879 14 C -0.001 4.001 15 N -0.901 5.901 16 Si 0.985 3.015 17 H -0.251 1.251 18 H -0.292 1.292 19 H -0.272 1.272 20 C 0.155 3.845 21 C 0.492 3.508 22 O -0.541 6.541 23 O -0.376 6.376 24 C 0.039 3.961 25 C -0.221 4.221 26 C 0.013 3.987 27 C -0.075 4.075 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.268 0.732 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.136 0.864 41 H 0.043 0.957 42 H 0.151 0.849 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.146 6.579 -5.501 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.043 3.957 4 H 0.163 0.837 5 C -0.218 4.218 6 N -0.077 5.077 7 N -0.079 5.079 8 C -0.182 4.182 9 C 0.326 3.674 10 O -0.515 6.515 11 N -0.145 5.145 12 C -0.446 4.446 13 H 0.138 0.862 14 C -0.202 4.202 15 N -0.541 5.541 16 Si 0.810 3.190 17 H -0.174 1.174 18 H -0.219 1.219 19 H -0.198 1.198 20 C 0.030 3.970 21 C 0.335 3.665 22 O -0.429 6.429 23 O -0.292 6.292 24 C -0.054 4.054 25 C -0.250 4.250 26 C -0.111 4.111 27 C -0.133 4.133 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.067 0.933 40 H 0.154 0.846 41 H 0.062 0.938 42 H 0.169 0.831 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.556 5.909 -5.030 13.920 hybrid contribution 0.468 -0.891 -0.219 1.030 sum -11.089 5.018 -5.249 13.255 Atomic orbital electron populations 1.21767 0.91331 1.03015 1.03796 1.21862 0.98979 0.94670 1.01860 1.21997 0.72336 0.98835 1.02551 0.83733 1.22186 1.03996 1.00351 0.95218 1.46419 1.08215 1.36914 1.16142 1.74075 1.00340 1.16074 1.17371 1.21719 0.91327 1.06121 0.99061 1.17617 0.86988 0.82757 0.80064 1.90548 1.27947 1.65083 1.67913 1.43362 1.06806 1.41637 1.22709 1.20313 0.89241 0.99904 1.35156 0.86174 1.26221 1.02255 0.94515 0.97209 1.69661 1.33511 1.07452 1.43455 0.84975 0.78427 0.78236 0.77402 1.17388 1.21861 1.19796 1.20531 0.88741 0.89327 0.98421 1.23881 0.76103 0.85575 0.80951 1.90478 1.51938 1.69640 1.30823 1.86413 1.45705 1.38269 1.58863 1.23277 1.02009 0.84045 0.96100 1.21584 0.97275 1.07198 0.98920 1.21953 0.90934 1.02673 0.95558 1.20484 1.02072 0.99227 0.91512 0.90942 0.89835 0.92208 0.92606 0.93764 0.87025 0.93873 0.91619 0.92174 0.89354 0.85846 0.93269 0.84614 0.93800 0.83082 0.89305 0.88686 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.67 71.98 0.70 -1.59 16 2 C -0.14 -3.45 5.57 30.59 0.17 -3.28 16 3 C 0.14 3.35 3.02 44.99 0.14 3.49 16 4 H 0.15 2.12 6.55 -2.39 -0.02 2.11 16 5 C -0.16 -3.53 9.13 71.98 0.66 -2.87 16 6 N -0.29 -9.86 3.04 -314.20 -0.96 -10.81 16 7 N -0.24 -11.07 8.36 -48.20 -0.40 -11.47 16 8 C -0.02 -1.19 6.86 42.43 0.29 -0.90 16 9 C 0.54 30.51 7.38 86.72 0.64 31.15 16 10 O -0.63 -37.53 16.59 -4.04 -0.07 -37.60 16 11 N -0.43 -24.10 2.17 -643.11 -1.39 -25.49 16 12 C -0.32 -17.45 8.15 84.09 0.69 -16.76 16 13 H 0.12 6.50 5.69 -2.91 -0.02 6.48 16 14 C 0.00 -0.05 5.33 84.95 0.45 0.40 16 15 N -0.90 -49.87 8.61 21.68 0.19 -49.68 16 16 Si 0.99 42.79 29.56 68.60 2.03 44.82 16 17 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 C 0.16 8.16 5.17 85.63 0.44 8.60 16 21 C 0.49 26.46 5.97 71.24 0.43 26.88 16 22 O -0.54 -32.85 15.38 21.97 0.34 -32.51 16 23 O -0.38 -17.15 10.56 -51.38 -0.54 -17.69 16 24 C 0.04 1.42 10.56 113.37 1.20 2.62 16 25 C -0.22 -9.14 10.73 22.42 0.24 -8.90 16 26 C 0.01 0.42 6.92 41.40 0.29 0.71 16 27 C -0.08 -1.33 9.92 71.24 0.71 -0.62 16 28 H 0.07 1.01 6.57 -2.39 -0.02 1.00 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.61 6.56 -2.39 -0.02 1.60 16 34 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 37 H 0.09 4.37 7.56 -2.39 -0.02 4.36 16 38 H 0.12 6.37 6.85 -2.38 -0.02 6.36 16 39 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 40 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.15 5.94 8.06 -2.91 -0.02 5.92 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 1.12 7.02 -2.39 -0.02 1.10 16 45 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -81.53 372.67 7.22 -74.32 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 1.00 Total: 27.19 kcal Atomic # 6 Polarization: 31.89 SS G_CDS: 7.03 Total: 38.92 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -2.56 Total: -97.45 kcal Atomic # 8 Polarization: -87.53 SS G_CDS: -0.27 Total: -87.80 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -81.53 7.22 -74.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349458439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.971 kcal (2) G-P(sol) polarization free energy of solvation -81.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds