Wall clock time and date at job start Tue Mar 31 2020 14:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47407 * 2 1 4 4 N 1.28445 * 125.19721 * 96.23978 * 3 2 1 5 5 C 1.30883 * 110.95065 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.05893 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46926 * 265.02220 * 6 5 4 8 8 C 1.52995 * 109.47495 * 145.02066 * 6 5 4 9 9 C 1.39647 * 107.87770 * 0.26000 * 5 4 3 10 10 C 1.36655 * 125.19476 * 276.21518 * 3 2 1 11 11 C 1.47021 * 126.89299 * 0.05597 * 10 3 2 12 12 O 1.21675 * 120.00170 * 352.74866 * 11 10 3 13 13 N 1.34771 * 120.00060 * 172.75113 * 11 10 3 14 14 C 1.36845 * 119.99922 * 5.21350 * 13 11 10 15 15 H 1.07994 * 119.99788 * 300.70102 * 14 13 11 16 16 C 1.39056 * 119.99886 * 120.69850 * 14 13 11 17 17 N 1.31362 * 119.99788 * 352.82219 * 16 14 13 18 18 Si 1.86799 * 119.99655 * 172.82469 * 16 14 13 19 19 H 1.48498 * 109.47308 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46894 * 120.00012 * 18 16 14 21 21 H 1.48497 * 109.46824 * 239.99484 * 18 16 14 22 22 C 1.46500 * 120.00203 * 185.21589 * 13 11 10 23 23 C 1.50697 * 109.47244 * 84.48177 * 22 13 11 24 24 O 1.20825 * 119.99973 * 0.02562 * 23 22 13 25 25 O 1.34229 * 120.00206 * 179.97438 * 23 22 13 26 26 C 1.45193 * 117.00241 * 180.02562 * 25 23 22 27 27 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47214 * 300.00264 * 1 2 3 29 29 H 1.08998 * 109.46968 * 60.00017 * 1 2 3 30 30 H 1.09002 * 109.47454 * 239.99305 * 2 1 3 31 31 H 1.09008 * 109.46881 * 119.99816 * 2 1 3 32 32 H 1.08998 * 109.47306 * 25.01523 * 6 5 4 33 33 H 1.09000 * 109.46997 * 300.00033 * 7 6 5 34 34 H 1.08998 * 109.47038 * 60.00007 * 7 6 5 35 35 H 1.09001 * 109.47373 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46846 * 59.99711 * 8 6 5 37 37 H 1.09001 * 109.47292 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47085 * 299.99883 * 8 6 5 39 39 H 1.08000 * 127.32020 * 179.74550 * 9 5 4 40 40 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47280 * 204.48109 * 22 13 11 42 42 H 1.09004 * 109.47295 * 324.48354 * 22 13 11 43 43 H 1.09003 * 109.47530 * 59.99909 * 26 25 23 44 44 H 1.09005 * 109.47459 * 180.02562 * 26 25 23 45 45 H 1.09010 * 109.47237 * 300.00036 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.3727 2.0411 1.0434 5 6 2.7631 3.2486 0.7232 6 6 3.2490 4.3067 1.6799 7 6 2.0836 5.2205 2.0643 8 6 4.3470 5.1350 1.0096 9 6 2.6445 3.3843 -0.6616 10 6 2.1669 2.1640 -1.1102 11 6 1.8723 1.7885 -2.5008 12 8 1.5757 0.6399 -2.7710 13 7 1.9309 2.7167 -3.4762 14 6 2.3673 3.9820 -3.1914 15 1 1.8489 4.5792 -2.4559 16 6 3.4782 4.4988 -3.8489 17 7 4.1924 3.7278 -4.6371 18 14 3.9550 6.2892 -3.6113 19 1 2.9958 6.9377 -2.6815 20 1 5.3247 6.3654 -3.0426 21 1 3.9234 6.9879 -4.9212 22 6 1.5273 2.3710 -4.8414 23 6 0.0334 2.5170 -4.9759 24 8 -0.6264 2.8736 -4.0286 25 8 -0.5641 2.2518 -6.1482 26 6 -2.0058 2.4143 -6.2050 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.6483 3.8309 2.5756 33 1 1.6842 5.6962 1.1687 34 1 1.3014 4.6304 2.5419 35 1 2.4351 5.9861 2.7560 36 1 3.9475 5.6107 0.1140 37 1 4.6981 5.9006 1.7015 38 1 5.1772 4.4839 0.7358 39 1 2.8781 4.2549 -1.2566 40 1 4.9676 4.0882 -5.0955 41 1 2.0225 3.0385 -5.5467 42 1 1.8123 1.3408 -5.0548 43 1 -2.2645 3.4471 -5.9714 44 1 -2.3601 2.1680 -7.2060 45 1 -2.4752 1.7493 -5.4799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358593154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:23 Heat of formation + Delta-G solvation = -40.872583 kcal Electronic energy + Delta-G solvation = -29210.210732 eV Core-core repulsion = 25230.210770 eV Total energy + Delta-G solvation = -3979.999962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.75916 -39.86213 -38.25722 -35.94987 -35.62767 -34.81093 -33.15185 -31.78699 -30.46892 -28.62407 -28.39830 -26.81812 -26.41160 -25.18544 -23.56769 -22.29582 -21.56802 -20.34355 -19.56365 -18.76120 -17.53966 -17.05300 -16.26628 -15.87837 -15.61297 -15.37550 -15.12963 -14.74030 -14.67360 -14.11428 -13.85575 -13.71965 -13.50719 -13.02647 -12.90808 -12.72649 -12.64749 -12.48014 -12.07166 -11.80819 -11.72740 -11.65754 -11.54163 -11.24269 -11.18169 -11.08693 -10.88466 -10.80370 -10.76379 -10.67190 -10.40804 -10.32991 -9.87243 -9.77894 -9.16831 -8.83091 -8.22360 -8.00705 -7.52938 -6.55006 -4.46178 2.24210 2.94803 3.01356 3.07075 3.14993 3.18605 3.26896 3.39566 3.96812 4.38733 4.52740 4.81005 4.96598 5.24110 5.29404 5.37821 5.39151 5.44380 5.52815 5.54772 5.62293 5.77211 5.80850 5.83139 5.90756 5.94714 6.01949 6.13477 6.19257 6.22727 6.25968 6.38005 6.43269 6.49154 6.51045 6.59419 6.73733 6.91359 6.93681 7.29375 7.47527 7.57846 7.74235 8.17857 8.45524 8.83137 8.87668 9.17754 9.64170 10.50191 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.006357 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.391304 B = 4403.807237 C = 6256.460682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 N -0.273 5.273 4 N -0.297 5.297 5 C 0.005 3.995 6 C -0.002 4.002 7 C -0.140 4.140 8 C -0.144 4.144 9 C -0.163 4.163 10 C -0.003 4.003 11 C 0.573 3.427 12 O -0.598 6.598 13 N -0.410 5.410 14 C -0.349 4.349 15 H 0.095 0.905 16 C 0.056 3.944 17 N -0.857 5.857 18 Si 0.908 3.092 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.277 1.277 22 C 0.138 3.862 23 C 0.444 3.556 24 O -0.504 6.504 25 O -0.368 6.368 26 C 0.037 3.963 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.186 0.814 40 H 0.274 0.726 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 0.349 3.584 5.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.002 3.998 3 N -0.061 5.061 4 N -0.129 5.129 5 C -0.152 4.152 6 C -0.022 4.022 7 C -0.198 4.198 8 C -0.202 4.202 9 C -0.191 4.191 10 C -0.130 4.130 11 C 0.363 3.637 12 O -0.483 6.483 13 N -0.129 5.129 14 C -0.477 4.477 15 H 0.113 0.887 16 C -0.153 4.153 17 N -0.490 5.490 18 Si 0.733 3.267 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.202 1.202 22 C 0.013 3.987 23 C 0.286 3.714 24 O -0.390 6.390 25 O -0.285 6.285 26 C -0.058 4.058 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.957 -0.994 4.459 6.044 hybrid contribution 0.118 1.386 -0.728 1.570 sum -3.839 0.391 3.731 5.368 Atomic orbital electron populations 1.22050 0.94343 1.02571 1.02904 1.21897 0.95514 0.77706 1.04685 1.45553 1.46074 1.11850 1.02606 1.72874 1.18589 1.07215 1.14246 1.21936 1.05906 0.92826 0.94567 1.19259 0.95333 0.92019 0.95573 1.21808 0.97848 0.98793 1.01382 1.21827 0.98128 0.99403 1.00839 1.23201 1.03617 0.99131 0.93110 1.21262 1.09567 0.92680 0.89486 1.17190 0.78453 0.84287 0.83803 1.90614 1.54344 1.19529 1.83848 1.42346 1.55652 1.10412 1.04476 1.19492 1.10941 0.90526 1.26726 0.88729 1.25692 0.94612 0.99500 0.95478 1.69839 1.16144 1.35712 1.27323 0.86156 0.79244 0.82325 0.79020 1.18419 1.19875 1.20220 1.20915 0.84413 1.04230 0.89147 1.25336 0.93298 0.72847 0.79938 1.90594 1.66285 1.42508 1.39575 1.86547 1.23326 1.80907 1.37697 1.23102 0.78327 1.01845 1.02510 0.90916 0.92557 0.91386 0.87180 0.89449 0.90724 0.92216 0.92908 0.92673 0.91890 0.92637 0.92399 0.79762 0.91579 0.85565 0.87913 0.92414 0.88845 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.12 2.14 6.41 -4.05 -0.03 2.11 16 3 N -0.27 -5.71 3.35 -57.15 -0.19 -5.90 16 4 N -0.30 -6.04 11.90 33.63 0.40 -5.64 16 5 C 0.01 0.10 6.12 -82.47 -0.51 -0.41 16 6 C 0.00 -0.03 3.38 -91.77 -0.31 -0.34 16 7 C -0.14 -1.94 9.18 37.16 0.34 -1.60 16 8 C -0.14 -2.07 8.79 37.15 0.33 -1.74 16 9 C -0.16 -3.56 8.44 -38.96 -0.33 -3.89 16 10 C 0.00 -0.08 6.87 -82.06 -0.56 -0.64 16 11 C 0.57 14.29 7.41 -12.70 -0.09 14.19 16 12 O -0.60 -15.14 14.39 5.21 0.07 -15.06 16 13 N -0.41 -10.09 1.88 -117.46 -0.22 -10.31 16 14 C -0.35 -8.47 6.09 -15.01 -0.09 -8.56 16 15 H 0.10 2.32 6.07 -52.49 -0.32 2.00 16 16 C 0.06 1.32 5.13 -17.45 -0.09 1.23 16 17 N -0.86 -21.11 12.41 55.50 0.69 -20.42 16 18 Si 0.91 18.19 29.54 -169.99 -5.02 13.17 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 C 0.14 3.11 5.51 -5.20 -0.03 3.08 16 23 C 0.44 9.59 7.99 36.00 0.29 9.88 16 24 O -0.50 -12.12 16.05 -18.75 -0.30 -12.42 16 25 O -0.37 -6.73 10.56 -39.26 -0.41 -7.14 16 26 C 0.04 0.51 10.56 101.05 1.07 1.58 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 30 H 0.11 2.04 6.54 -51.93 -0.34 1.70 16 31 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.96 7.37 -51.93 -0.38 0.58 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.19 4.07 4.32 -52.49 -0.23 3.84 16 40 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 41 H 0.13 2.82 6.88 -51.93 -0.36 2.46 16 42 H 0.10 2.27 7.52 -51.93 -0.39 1.88 16 43 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -29.86 376.29 -5.59 -35.45 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.64 Total: 9.90 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 0.36 Total: 12.71 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.68 Total: -42.27 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.64 Total: -34.62 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.86 -5.59 -35.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358593154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.426 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds