Wall clock time and date at job start Tue Mar 31 2020 14:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47407 * 2 1 4 4 N 1.28445 * 125.19721 * 96.23978 * 3 2 1 5 5 C 1.30883 * 110.95065 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.05893 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46926 * 265.02220 * 6 5 4 8 8 C 1.52995 * 109.47495 * 145.02066 * 6 5 4 9 9 C 1.39647 * 107.87770 * 0.26000 * 5 4 3 10 10 C 1.36655 * 125.19476 * 276.21518 * 3 2 1 11 11 C 1.47021 * 126.89299 * 0.05597 * 10 3 2 12 12 O 1.21675 * 120.00170 * 352.74866 * 11 10 3 13 13 N 1.34771 * 120.00060 * 172.75113 * 11 10 3 14 14 C 1.36845 * 119.99922 * 5.21350 * 13 11 10 15 15 H 1.07994 * 119.99788 * 300.70102 * 14 13 11 16 16 C 1.39056 * 119.99886 * 120.69850 * 14 13 11 17 17 N 1.31362 * 119.99788 * 352.82219 * 16 14 13 18 18 Si 1.86799 * 119.99655 * 172.82469 * 16 14 13 19 19 H 1.48498 * 109.47308 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46894 * 120.00012 * 18 16 14 21 21 H 1.48497 * 109.46824 * 239.99484 * 18 16 14 22 22 C 1.46500 * 120.00203 * 185.21589 * 13 11 10 23 23 C 1.50697 * 109.47244 * 84.48177 * 22 13 11 24 24 O 1.20825 * 119.99973 * 0.02562 * 23 22 13 25 25 O 1.34229 * 120.00206 * 179.97438 * 23 22 13 26 26 C 1.45193 * 117.00241 * 180.02562 * 25 23 22 27 27 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47214 * 300.00264 * 1 2 3 29 29 H 1.08998 * 109.46968 * 60.00017 * 1 2 3 30 30 H 1.09002 * 109.47454 * 239.99305 * 2 1 3 31 31 H 1.09008 * 109.46881 * 119.99816 * 2 1 3 32 32 H 1.08998 * 109.47306 * 25.01523 * 6 5 4 33 33 H 1.09000 * 109.46997 * 300.00033 * 7 6 5 34 34 H 1.08998 * 109.47038 * 60.00007 * 7 6 5 35 35 H 1.09001 * 109.47373 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46846 * 59.99711 * 8 6 5 37 37 H 1.09001 * 109.47292 * 179.97438 * 8 6 5 38 38 H 1.09000 * 109.47085 * 299.99883 * 8 6 5 39 39 H 1.08000 * 127.32020 * 179.74550 * 9 5 4 40 40 H 0.97002 * 119.99872 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47280 * 204.48109 * 22 13 11 42 42 H 1.09004 * 109.47295 * 324.48354 * 22 13 11 43 43 H 1.09003 * 109.47530 * 59.99909 * 26 25 23 44 44 H 1.09005 * 109.47459 * 180.02562 * 26 25 23 45 45 H 1.09010 * 109.47237 * 300.00036 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.3727 2.0411 1.0434 5 6 2.7631 3.2486 0.7232 6 6 3.2490 4.3067 1.6799 7 6 2.0836 5.2205 2.0643 8 6 4.3470 5.1350 1.0096 9 6 2.6445 3.3843 -0.6616 10 6 2.1669 2.1640 -1.1102 11 6 1.8723 1.7885 -2.5008 12 8 1.5757 0.6399 -2.7710 13 7 1.9309 2.7167 -3.4762 14 6 2.3673 3.9820 -3.1914 15 1 1.8489 4.5792 -2.4559 16 6 3.4782 4.4988 -3.8489 17 7 4.1924 3.7278 -4.6371 18 14 3.9550 6.2892 -3.6113 19 1 2.9958 6.9377 -2.6815 20 1 5.3247 6.3654 -3.0426 21 1 3.9234 6.9879 -4.9212 22 6 1.5273 2.3710 -4.8414 23 6 0.0334 2.5170 -4.9759 24 8 -0.6264 2.8736 -4.0286 25 8 -0.5641 2.2518 -6.1482 26 6 -2.0058 2.4143 -6.2050 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.6483 3.8309 2.5756 33 1 1.6842 5.6962 1.1687 34 1 1.3014 4.6304 2.5419 35 1 2.4351 5.9861 2.7560 36 1 3.9475 5.6107 0.1140 37 1 4.6981 5.9006 1.7015 38 1 5.1772 4.4839 0.7358 39 1 2.8781 4.2549 -1.2566 40 1 4.9676 4.0882 -5.0955 41 1 2.0225 3.0385 -5.5467 42 1 1.8123 1.3408 -5.0548 43 1 -2.2645 3.4471 -5.9714 44 1 -2.3601 2.1680 -7.2060 45 1 -2.4752 1.7493 -5.4799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358593154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:22 Heat of formation + Delta-G solvation = -57.339711 kcal Electronic energy + Delta-G solvation = -29210.924801 eV Core-core repulsion = 25230.210770 eV Total energy + Delta-G solvation = -3980.714030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37133 -41.55683 -40.05553 -37.57668 -37.11293 -36.51881 -34.52585 -33.64117 -32.17614 -30.07844 -29.98004 -27.95431 -27.86508 -27.00741 -24.95785 -23.92130 -23.12425 -21.93235 -21.24131 -20.41674 -19.13078 -18.74142 -17.98151 -17.45704 -17.22159 -17.11412 -16.75781 -16.45663 -16.23561 -15.54993 -15.35223 -15.23042 -14.88038 -14.58324 -14.45250 -14.24204 -14.07199 -14.01819 -13.43181 -13.35809 -13.11598 -12.96333 -12.94517 -12.91561 -12.80593 -12.61594 -12.35769 -12.12334 -12.02794 -11.99979 -11.93803 -11.80093 -11.59864 -11.36308 -10.97793 -10.66795 -9.88590 -9.62558 -9.38309 -8.37283 -6.35050 0.49978 1.21104 1.42498 1.47313 1.52461 1.62131 1.72195 1.83179 2.28084 2.57036 2.80560 2.99875 3.55186 3.91297 3.98029 4.02015 4.03427 4.16281 4.28059 4.29926 4.30834 4.37247 4.40492 4.49099 4.59428 4.63886 4.67176 4.70352 4.80049 4.90161 4.92752 5.00697 5.07167 5.09095 5.17852 5.31093 5.32740 5.41989 5.47947 5.55930 5.82434 5.90659 6.00547 6.30771 6.77234 6.99711 7.18900 7.35373 7.77624 8.68978 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.006357 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.391304 B = 4403.807237 C = 6256.460682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 N -0.275 5.275 4 N -0.297 5.297 5 C 0.008 3.992 6 C -0.002 4.002 7 C -0.135 4.135 8 C -0.142 4.142 9 C -0.170 4.170 10 C -0.037 4.037 11 C 0.558 3.442 12 O -0.615 6.615 13 N -0.419 5.419 14 C -0.359 4.359 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.885 5.885 18 Si 0.965 3.035 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.274 1.274 22 C 0.138 3.862 23 C 0.452 3.548 24 O -0.533 6.533 25 O -0.365 6.365 26 C 0.029 3.971 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.179 0.821 40 H 0.278 0.722 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.139 0.861 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 1.421 4.676 6.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 N -0.063 5.063 4 N -0.129 5.129 5 C -0.150 4.150 6 C -0.022 4.022 7 C -0.193 4.193 8 C -0.200 4.200 9 C -0.199 4.199 10 C -0.163 4.163 11 C 0.349 3.651 12 O -0.503 6.503 13 N -0.137 5.137 14 C -0.486 4.486 15 H 0.105 0.895 16 C -0.181 4.181 17 N -0.519 5.519 18 Si 0.787 3.213 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.199 1.199 22 C 0.013 3.987 23 C 0.295 3.705 24 O -0.422 6.422 25 O -0.281 6.281 26 C -0.065 4.065 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.157 0.843 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.041 0.064 5.529 6.849 hybrid contribution 0.077 0.986 -1.122 1.496 sum -3.965 1.050 4.407 6.020 Atomic orbital electron populations 1.21968 0.93245 1.04290 1.01163 1.22143 0.96403 0.76443 1.05439 1.45864 1.45818 1.12660 1.01971 1.72878 1.18512 1.07562 1.13950 1.22573 1.04725 0.93320 0.94351 1.19475 0.96270 0.91367 0.95130 1.21778 0.97010 0.99046 1.01505 1.21830 0.97288 0.99801 1.01091 1.23218 1.03722 0.98551 0.94365 1.21298 1.11400 0.94097 0.89522 1.17575 0.78501 0.84296 0.84758 1.90568 1.55318 1.20028 1.84341 1.42532 1.55673 1.10528 1.04994 1.19551 1.11529 0.90366 1.27184 0.89454 1.26355 0.94009 1.02999 0.94753 1.69918 1.16599 1.37401 1.27971 0.85282 0.79131 0.77720 0.79119 1.17549 1.19309 1.19885 1.20850 0.85515 1.03936 0.88422 1.24969 0.92897 0.72251 0.80405 1.90576 1.66820 1.44059 1.40740 1.86509 1.25937 1.80090 1.35549 1.23530 0.75487 1.02157 1.05284 0.87483 0.91971 0.95178 0.88730 0.86265 0.89231 0.93434 0.93483 0.89407 0.93184 0.89288 0.93394 0.80380 0.91214 0.85754 0.88178 0.92218 0.84301 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 10.24 71.98 0.74 -4.00 16 2 C 0.12 4.01 6.41 86.38 0.55 4.57 16 3 N -0.27 -11.60 3.35 -334.71 -1.12 -12.72 16 4 N -0.30 -11.91 11.90 -47.50 -0.57 -12.47 16 5 C 0.01 0.29 6.12 43.04 0.26 0.55 16 6 C 0.00 -0.07 3.38 -11.54 -0.04 -0.11 16 7 C -0.14 -3.43 9.18 71.98 0.66 -2.77 16 8 C -0.14 -3.79 8.79 71.98 0.63 -3.16 16 9 C -0.17 -7.58 8.44 22.68 0.19 -7.39 16 10 C -0.04 -1.76 6.87 40.76 0.28 -1.48 16 11 C 0.56 29.02 7.41 86.55 0.64 29.66 16 12 O -0.62 -32.56 14.39 -4.27 -0.06 -32.62 16 13 N -0.42 -21.38 1.88 -643.77 -1.21 -22.59 16 14 C -0.36 -17.87 6.09 84.11 0.51 -17.36 16 15 H 0.09 4.42 6.07 -2.91 -0.02 4.40 16 16 C 0.03 1.19 5.13 84.96 0.44 1.63 16 17 N -0.88 -44.24 12.41 21.68 0.27 -43.97 16 18 Si 0.97 37.02 29.54 68.60 2.03 39.05 16 19 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 22 C 0.14 6.42 5.51 85.63 0.47 6.89 16 23 C 0.45 19.93 7.99 71.24 0.57 20.50 16 24 O -0.53 -26.34 16.05 21.97 0.35 -25.98 16 25 O -0.36 -13.19 10.56 -51.41 -0.54 -13.73 16 26 C 0.03 0.76 10.56 113.37 1.20 1.96 16 27 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 30 H 0.09 3.60 6.54 -2.39 -0.02 3.58 16 31 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.45 7.37 -2.39 -0.02 1.44 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.18 8.06 4.32 -2.91 -0.01 8.04 16 40 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 41 H 0.12 5.75 6.88 -2.38 -0.02 5.74 16 42 H 0.10 4.63 7.52 -2.39 -0.02 4.61 16 43 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 44 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -66.29 376.29 7.26 -59.03 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 1.00 Total: 36.50 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: 7.11 Total: 29.50 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -2.62 Total: -91.75 kcal Atomic # 8 Polarization: -72.08 SS G_CDS: -0.25 Total: -72.34 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Total: -66.29 7.26 -59.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358593154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.693 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds