Wall clock time and date at job start Tue Mar 31 2020 14:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00322 * 2 1 4 4 N 1.46501 * 109.46997 * 125.00052 * 3 2 1 5 5 C 1.46498 * 120.00202 * 270.00402 * 4 3 2 6 6 C 1.50702 * 109.47366 * 269.99924 * 5 4 3 7 7 H 1.07995 * 119.99809 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99910 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99846 * 179.97438 * 8 6 5 10 10 Si 1.86795 * 120.00282 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47182 * 90.00246 * 10 8 6 12 12 H 1.48507 * 109.47250 * 209.99965 * 10 8 6 13 13 H 1.48497 * 109.47421 * 329.99936 * 10 8 6 14 14 C 1.34771 * 119.99862 * 90.00269 * 4 3 2 15 15 O 1.21287 * 120.00244 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00129 * 0.02562 * 14 4 3 17 17 C 1.53001 * 109.47187 * 179.97438 * 16 14 4 18 18 C 1.50702 * 109.46910 * 180.02562 * 17 16 14 19 19 N 1.31135 * 126.55221 * 90.00405 * 18 17 16 20 20 C 1.34494 * 105.61405 * 179.97438 * 19 18 17 21 21 C 1.50702 * 126.28514 * 179.97438 * 20 19 18 22 22 H 1.08995 * 109.47403 * 14.99784 * 21 20 19 23 23 C 1.53003 * 109.47166 * 255.00126 * 21 20 19 24 24 O 1.42898 * 109.47016 * 134.99921 * 21 20 19 25 25 C 1.42903 * 113.99979 * 209.99601 * 24 21 20 26 26 N 1.29948 * 107.42789 * 0.24080 * 20 19 18 27 27 O 1.21299 * 110.24706 * 359.57919 * 26 20 19 28 28 H 1.07999 * 120.00151 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.00440 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00135 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47003 * 5.00603 * 3 2 1 32 32 H 1.08998 * 109.47841 * 245.00077 * 3 2 1 33 33 H 1.09002 * 109.47244 * 30.00031 * 5 4 3 34 34 H 1.09008 * 109.47512 * 149.99769 * 5 4 3 35 35 H 0.96997 * 120.00437 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47321 * 60.00291 * 16 14 4 37 37 H 1.09001 * 109.47519 * 299.99825 * 16 14 4 38 38 H 1.08994 * 109.47245 * 60.00359 * 17 16 14 39 39 H 1.08998 * 109.47302 * 300.00139 * 17 16 14 40 40 H 1.09004 * 109.46783 * 300.00297 * 23 21 20 41 41 H 1.09001 * 109.46999 * 59.99852 * 23 21 20 42 42 H 1.08990 * 109.47164 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.47382 * 300.00227 * 25 24 21 44 44 H 1.09001 * 109.46938 * 180.02562 * 25 24 21 45 45 H 1.09004 * 109.46926 * 60.00334 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8647 2.4249 6 6 2.8443 3.3434 2.4806 7 1 3.3033 3.8369 1.6368 8 6 2.5185 4.0663 3.6085 9 7 2.7681 5.3567 3.6573 10 14 1.7240 3.2129 5.0678 11 1 2.7800 2.7227 5.9897 12 1 0.8470 4.1729 5.7854 13 1 0.9132 2.0648 4.5886 14 6 4.2496 0.8660 0.9823 15 8 5.0197 0.8876 1.9191 16 6 4.6972 0.3183 -0.3483 17 6 6.1536 -0.1394 -0.2477 18 6 6.6013 -0.6866 -1.5786 19 7 7.1552 -0.0090 -2.5551 20 6 7.3820 -0.9037 -3.5334 21 6 8.0075 -0.6193 -4.8747 22 1 8.4937 0.3559 -4.8494 23 6 6.9228 -0.6204 -5.9538 24 8 8.9761 -1.6270 -5.1718 25 6 10.0585 -1.1708 -5.9857 26 7 6.9576 -2.0573 -3.1118 27 8 6.5102 -1.9552 -1.9890 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4026 -0.9313 33 1 1.4888 1.6964 2.5460 34 1 3.0990 1.3600 3.2260 35 1 2.5386 5.8654 4.4506 36 1 4.6126 1.0953 -1.1081 37 1 4.0680 -0.5284 -0.6229 38 1 6.2387 -0.9163 0.5121 39 1 6.7825 0.7075 0.0267 40 1 6.4365 -1.5957 -5.9790 41 1 6.1839 0.1482 -5.7270 42 1 7.3752 -0.4152 -6.9239 43 1 9.6698 -0.8077 -6.9371 44 1 10.7494 -1.9942 -6.1663 45 1 10.5817 -0.3624 -5.4747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359437491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:10 Heat of formation + Delta-G solvation = -14.002438 kcal Electronic energy + Delta-G solvation = -26900.979105 eV Core-core repulsion = 22922.144320 eV Total energy + Delta-G solvation = -3978.834785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.74653 -40.85534 -39.52693 -37.35499 -37.00529 -35.65091 -34.97202 -33.72327 -32.92895 -31.73061 -30.23797 -27.81666 -27.14699 -26.65933 -25.88287 -24.50351 -23.59890 -21.85791 -21.11337 -19.92885 -19.24252 -19.04754 -18.76130 -18.00858 -17.52251 -17.25738 -16.88702 -16.70096 -16.28061 -16.06784 -15.79413 -15.28086 -14.97625 -14.66797 -14.40329 -14.12579 -14.08483 -13.81052 -13.69726 -13.54630 -13.52112 -13.34418 -13.00230 -12.87754 -12.79089 -12.52846 -12.47245 -12.31226 -12.29137 -12.12575 -12.00968 -11.91956 -11.70509 -11.15586 -10.85282 -10.80316 -10.66072 -10.29303 -9.42520 -8.31077 -6.35670 0.00783 0.99359 1.33108 1.37325 1.38800 1.47215 1.64505 1.79750 2.09866 2.33261 2.46427 2.85053 3.03593 3.09083 3.57514 3.72362 3.83101 3.93522 4.02460 4.07706 4.15702 4.25357 4.40867 4.42774 4.45997 4.49825 4.55052 4.60244 4.69508 4.74730 4.81328 4.82009 4.89367 4.92212 4.94482 4.98162 5.10370 5.10790 5.48491 5.55118 5.75390 5.95009 5.98633 6.26157 6.65856 6.69251 7.04760 7.24071 7.40724 8.85658 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.002483 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.619746 B =11272.686767 C =11839.332056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C 0.130 3.870 4 N -0.595 5.595 5 C 0.227 3.773 6 C -0.533 4.533 7 H 0.031 0.969 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.239 1.239 14 C 0.506 3.494 15 O -0.585 6.585 16 C -0.123 4.123 17 C -0.007 4.007 18 C 0.203 3.797 19 N -0.491 5.491 20 C 0.159 3.841 21 C 0.176 3.824 22 H 0.107 0.893 23 C -0.162 4.162 24 O -0.403 6.403 25 C 0.023 3.977 26 N -0.381 5.381 27 O 0.082 5.918 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.267 0.733 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -15.347 -19.565 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C 0.008 3.992 4 N -0.324 5.324 5 C 0.104 3.896 6 C -0.571 4.571 7 H 0.050 0.950 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.768 3.232 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.162 1.162 14 C 0.295 3.705 15 O -0.466 6.466 16 C -0.163 4.163 17 C -0.046 4.046 18 C -0.017 4.017 19 N -0.226 5.226 20 C -0.114 4.114 21 C 0.116 3.884 22 H 0.125 0.875 23 C -0.220 4.220 24 O -0.322 6.322 25 C -0.072 4.072 26 N -0.088 5.088 27 O 0.022 5.978 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.183 -15.732 -19.630 25.685 hybrid contribution -0.123 0.661 1.038 1.237 sum 5.060 -15.071 -18.592 24.462 Atomic orbital electron populations 1.24070 0.95676 1.02855 0.98348 1.23338 0.96704 0.98230 1.01816 1.20857 0.92767 0.96529 0.89011 1.47944 1.11953 1.59756 1.12791 1.19291 0.95432 0.92091 0.82747 1.21563 1.40322 0.93503 1.01750 0.95030 1.25820 0.96031 0.95335 1.01511 1.70046 1.49508 1.08506 1.30502 0.85759 0.79090 0.79346 0.79044 1.20088 1.20311 1.16181 1.20931 0.81381 0.77581 0.90605 1.90673 1.53470 1.58383 1.44067 1.21617 0.95766 1.04124 0.94809 1.19969 0.96312 1.03059 0.85281 1.28911 0.94124 0.80310 0.98360 1.71913 1.18443 1.31513 1.00707 1.26056 1.01001 0.84864 0.99481 1.20255 0.90365 0.92766 0.84977 0.87547 1.22220 0.98137 1.03158 0.98499 1.87947 1.35978 1.36263 1.71986 1.23111 0.88203 1.01620 0.94311 1.74645 1.15305 1.23651 0.95220 1.85325 1.58709 1.30989 1.22784 0.88480 0.86521 0.85991 0.90633 0.87801 0.93713 0.95979 0.92363 0.87029 0.85369 0.85882 0.87128 0.92343 0.90458 0.88516 0.91590 0.88109 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 14.32 67.79 0.97 -2.45 16 2 C -0.18 -4.01 9.74 25.65 0.25 -3.76 16 3 C 0.13 3.61 5.65 85.63 0.48 4.09 16 4 N -0.59 -22.29 2.44 -830.49 -2.03 -24.31 16 5 C 0.23 10.59 4.23 85.63 0.36 10.95 16 6 C -0.53 -30.47 9.94 25.60 0.25 -30.21 16 7 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 8 C 0.01 0.64 5.47 84.65 0.46 1.10 16 9 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 10 Si 0.94 43.72 27.47 68.60 1.88 45.61 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 14 C 0.51 18.09 7.67 87.66 0.67 18.77 16 15 O -0.59 -26.26 15.56 -3.05 -0.05 -26.30 16 16 C -0.12 -2.83 4.23 29.85 0.13 -2.70 16 17 C -0.01 -0.16 5.13 29.85 0.15 0.00 16 18 C 0.20 4.75 7.77 88.38 0.69 5.43 16 19 N -0.49 -12.66 11.55 -303.20 -3.50 -16.16 16 20 C 0.16 3.96 7.10 138.46 0.98 4.95 16 21 C 0.18 3.31 3.27 29.85 0.10 3.41 16 22 H 0.11 1.67 7.79 -2.39 -0.02 1.65 16 23 C -0.16 -2.33 9.51 71.98 0.68 -1.64 16 24 O -0.40 -8.10 10.33 -148.98 -1.54 -9.64 16 25 C 0.02 0.26 10.82 113.37 1.23 1.49 16 26 N -0.38 -10.21 12.16 -60.32 -0.73 -10.95 16 27 O 0.08 2.00 11.31 74.81 0.85 2.85 16 28 H 0.10 1.98 7.84 -2.91 -0.02 1.96 16 29 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.12 2.31 7.83 -2.91 -0.02 2.29 16 31 H 0.08 2.31 7.72 -2.38 -0.02 2.29 16 32 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 33 H 0.04 1.96 7.13 -2.39 -0.02 1.94 16 34 H 0.02 1.11 6.85 -2.38 -0.02 1.09 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.11 2.37 7.40 -2.38 -0.02 2.35 16 37 H 0.13 2.16 7.78 -2.39 -0.02 2.15 16 38 H 0.12 2.51 8.10 -2.39 -0.02 2.50 16 39 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 40 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.10 0.91 7.87 -2.39 -0.02 0.89 16 43 H 0.07 0.48 7.87 -2.39 -0.02 0.46 16 44 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.05 0.52 8.09 -2.38 -0.02 0.50 16 Total: -1.00 -78.24 386.04 3.52 -74.72 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.93 Total: 13.53 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 7.41 Total: 9.41 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.96 Total: -110.18 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.74 Total: -33.10 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -78.24 3.52 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.721 kcal (2) G-P(sol) polarization free energy of solvation -78.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds