Wall clock time and date at job start Tue Mar 31 2020 14:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.51403 * 2 1 4 4 C 1.53294 * 109.51669 * 239.89449 * 2 1 3 5 5 N 1.47144 * 108.38522 * 292.38088 * 4 2 1 6 6 C 1.34774 * 120.98344 * 129.44055 * 5 4 2 7 7 O 1.21282 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00055 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.47101 * 179.97438 * 8 6 5 10 10 N 1.29950 * 126.28876 * 90.02460 * 9 8 6 11 11 O 1.21300 * 110.25050 * 179.97438 * 10 9 8 12 12 C 1.33638 * 109.81146 * 359.97438 * 11 10 9 13 13 C 1.50708 * 126.54934 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47049 * 269.97734 * 13 12 11 15 15 C 1.50704 * 109.47048 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99770 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00188 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99740 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47287 * 60.00220 * 19 17 15 21 21 H 1.48504 * 109.46653 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46752 * 299.99786 * 19 17 15 23 23 N 1.31128 * 106.90051 * 359.77019 * 12 11 10 24 24 C 1.47148 * 118.03628 * 309.46245 * 5 4 2 25 25 C 1.53293 * 108.38754 * 50.53481 * 24 5 4 26 26 H 1.08998 * 109.51254 * 67.67269 * 25 24 5 27 27 C 1.52999 * 109.51545 * 187.77945 * 25 24 5 28 28 O 1.42963 * 109.22099 * 307.70031 * 25 24 5 29 29 H 1.09002 * 109.47153 * 180.10259 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.10450 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.10432 * 1 2 3 32 32 H 1.09009 * 109.67463 * 52.10278 * 4 2 1 33 33 H 1.08997 * 109.68641 * 172.61611 * 4 2 1 34 34 H 1.08997 * 109.47140 * 299.99547 * 8 6 5 35 35 H 1.08998 * 109.47265 * 59.99848 * 8 6 5 36 36 H 1.09002 * 109.46542 * 29.98099 * 13 12 11 37 37 H 1.09001 * 109.46798 * 149.97567 * 13 12 11 38 38 H 1.08996 * 109.47775 * 300.00076 * 14 13 12 39 39 H 1.09006 * 109.46889 * 60.00670 * 14 13 12 40 40 H 0.97003 * 120.00170 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.68589 * 170.26142 * 24 5 4 42 42 H 1.09005 * 109.68219 * 290.77661 * 24 5 4 43 43 H 1.08994 * 109.47387 * 59.99262 * 27 25 24 44 44 H 1.09007 * 109.47251 * 180.02562 * 27 25 24 45 45 H 1.09002 * 109.46755 * 299.99280 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2500 5 7 1.6960 -2.1502 -1.1344 6 6 1.0709 -2.7960 -2.1387 7 8 0.7849 -2.2018 -3.1566 8 6 0.7264 -4.2562 -1.9964 9 6 0.0376 -4.7341 -3.2488 10 7 0.6138 -5.2374 -4.2992 11 8 -0.2159 -5.5246 -5.1361 12 6 -1.4373 -5.2231 -4.6853 13 6 -2.7391 -5.4231 -5.4178 14 6 -3.0634 -4.1697 -6.2330 15 6 -4.3648 -4.3700 -6.9659 16 1 -4.9067 -5.2984 -6.8605 17 6 -4.8638 -3.3682 -7.7711 18 7 -4.2038 -2.2380 -7.8999 19 14 -6.4774 -3.6163 -8.6791 20 1 -7.5646 -3.8630 -7.6981 21 1 -6.7915 -2.4002 -9.4714 22 1 -6.3584 -4.7829 -9.5900 23 7 -1.2870 -4.7240 -3.4820 24 6 2.0521 -2.8497 0.1102 25 6 1.5396 -2.0215 1.2940 26 1 0.4497 -2.0296 1.2992 27 6 2.0614 -2.6212 2.6013 28 8 2.0075 -0.6768 1.1653 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3633 0.5122 -0.8909 31 1 -0.3634 0.5155 0.8891 32 1 1.5704 -0.3032 -2.1377 33 1 3.1240 -0.6137 -1.3214 34 1 1.6391 -4.8315 -1.8413 35 1 0.0622 -4.3913 -1.1428 36 1 -2.6516 -6.2792 -6.0868 37 1 -3.5369 -5.6048 -4.6976 38 1 -3.1508 -3.3136 -5.5640 39 1 -2.2655 -3.9882 -6.9531 40 1 -4.5547 -1.5333 -8.4667 41 1 1.5873 -3.8356 0.1233 42 1 3.1352 -2.9538 0.1759 43 1 3.1513 -2.6112 2.5961 44 1 1.6962 -2.0320 3.4426 45 1 1.7079 -3.6479 2.6966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361262017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:53 Heat of formation + Delta-G solvation = -18.700086 kcal Electronic energy + Delta-G solvation = -27500.700404 eV Core-core repulsion = 23521.661913 eV Total energy + Delta-G solvation = -3979.038490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.11013 -40.88384 -38.87690 -35.64924 -35.07772 -34.56820 -33.94089 -32.66126 -31.04552 -30.44823 -29.58297 -27.36804 -26.29754 -25.81380 -23.53556 -23.07089 -22.17978 -21.06084 -20.32989 -19.28802 -17.97968 -17.23413 -17.21324 -16.99876 -16.40184 -16.24742 -15.94157 -15.35873 -15.11409 -14.54061 -14.36497 -14.15958 -13.95640 -13.85954 -13.40178 -13.08481 -12.85984 -12.66621 -12.54153 -12.40661 -12.32966 -12.17070 -11.90124 -11.89387 -11.54660 -11.53966 -11.15846 -10.95443 -10.89007 -10.75831 -10.58698 -10.40717 -10.12355 -10.08295 -9.88758 -9.30143 -9.14493 -8.85042 -8.40970 -6.04623 -4.10030 1.60180 2.34037 2.39639 2.78695 3.27581 3.32339 3.35625 3.37707 3.40793 3.81391 4.15666 4.23870 4.29254 4.39893 4.43106 4.56907 4.65260 4.71819 4.84891 4.92211 4.93904 5.08861 5.09605 5.17266 5.31261 5.31770 5.39047 5.49290 5.52826 5.58638 5.59997 5.70472 5.90144 5.99188 6.06947 6.13432 6.26286 6.43418 6.66312 6.78038 6.98540 7.55020 7.62220 7.90467 7.91087 8.25604 8.59313 8.95223 9.54495 11.06444 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002613 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.028173 B =10712.984359 C =11608.110656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.116 0.884 4 C 0.083 3.917 5 N -0.617 5.617 6 C 0.522 3.478 7 O -0.511 6.511 8 C -0.043 4.043 9 C 0.177 3.823 10 N -0.388 5.388 11 O 0.073 5.927 12 C 0.218 3.782 13 C -0.028 4.028 14 C 0.028 3.972 15 C -0.527 4.527 16 H 0.061 0.939 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.489 5.489 24 C 0.076 3.924 25 C 0.067 3.933 26 H 0.071 0.929 27 C -0.144 4.144 28 O -0.371 6.371 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 -1.159 21.530 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.018 3.982 3 H 0.133 0.867 4 C -0.039 4.039 5 N -0.354 5.354 6 C 0.309 3.691 7 O -0.385 6.385 8 C -0.084 4.084 9 C -0.097 4.097 10 N -0.098 5.098 11 O 0.015 5.985 12 C -0.001 4.001 13 C -0.067 4.067 14 C -0.010 4.010 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.223 5.223 24 C -0.047 4.047 25 C 0.009 3.991 26 H 0.088 0.912 27 C -0.202 4.202 28 O -0.290 6.290 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.742 -0.520 21.317 25.923 hybrid contribution -1.049 -0.070 -0.795 1.318 sum 13.693 -0.590 20.523 24.678 Atomic orbital electron populations 1.22380 0.95447 1.03108 1.03185 1.22604 0.94443 0.96566 0.84618 0.86679 1.22327 1.00976 0.80595 1.00027 1.48013 1.60041 1.10925 1.16372 1.20280 0.77238 0.88608 0.83002 1.90821 1.51466 1.67967 1.28242 1.19790 1.01610 0.93514 0.93473 1.24678 0.87882 1.00614 0.96539 1.74489 1.15565 1.19324 1.00413 1.85257 1.14679 1.61006 1.37561 1.29573 0.90630 0.90949 0.88986 1.20762 0.83898 1.03873 0.98164 1.19153 0.97449 0.90138 0.94309 1.21026 1.06036 1.01472 1.27945 0.92090 1.25020 0.97546 0.95080 0.96617 1.69970 1.38832 1.05375 1.38631 0.86574 0.83613 0.77544 0.79781 1.20111 1.21276 1.20081 1.71849 1.14798 1.20885 1.14761 1.22551 1.01735 0.96668 0.83726 1.22498 0.98955 0.82875 0.94773 0.91159 1.21741 1.02318 1.00682 0.95414 1.88016 1.72275 1.25132 1.43615 0.91999 0.90899 0.91577 0.87776 0.90596 0.86410 0.85946 0.89058 0.88204 0.95491 0.95777 0.92697 0.88721 0.90118 0.91512 0.91305 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.81 37.16 0.33 -1.39 16 2 C 0.08 0.65 3.93 -26.58 -0.10 0.55 16 3 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.08 0.84 6.02 -3.54 -0.02 0.82 16 5 N -0.62 -6.55 2.54 -172.28 -0.44 -6.99 16 6 C 0.52 7.48 7.70 -10.99 -0.08 7.40 16 7 O -0.51 -10.11 15.50 5.56 0.09 -10.02 16 8 C -0.04 -0.53 4.70 -29.03 -0.14 -0.66 16 9 C 0.18 3.14 6.71 -156.37 -1.05 2.09 16 10 N -0.39 -7.44 12.16 30.90 0.38 -7.06 16 11 O 0.07 1.44 11.31 18.11 0.20 1.64 16 12 C 0.22 4.35 7.77 -13.06 -0.10 4.24 16 13 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 14 C 0.03 0.71 4.96 -27.88 -0.14 0.57 16 15 C -0.53 -14.39 9.11 -34.44 -0.31 -14.70 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 N -0.49 -9.72 11.55 -9.86 -0.11 -9.84 16 24 C 0.08 0.53 5.83 -3.54 -0.02 0.51 16 25 C 0.07 0.48 3.01 -26.58 -0.08 0.40 16 26 H 0.07 0.53 6.25 -51.93 -0.32 0.20 16 27 C -0.14 -0.70 9.57 37.16 0.36 -0.34 16 28 O -0.37 -3.32 10.23 -35.23 -0.36 -3.68 16 29 H 0.06 0.65 6.11 -51.93 -0.32 0.33 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.25 7.08 -51.92 -0.37 0.89 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.12 1.07 8.01 -51.93 -0.42 0.66 16 35 H 0.12 1.16 7.66 -51.93 -0.40 0.76 16 36 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.09 0.47 6.05 -51.93 -0.31 0.15 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -35.61 371.69 -7.31 -42.91 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.75 Total: -3.05 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.63 Total: 0.36 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.56 Total: -50.00 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.07 Total: -12.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.61 -7.31 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361262017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.214 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds