Wall clock time and date at job start Tue Mar 31 2020 14:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.51403 * 2 1 4 4 C 1.53294 * 109.51669 * 239.89449 * 2 1 3 5 5 N 1.47144 * 108.38522 * 292.38088 * 4 2 1 6 6 C 1.34774 * 120.98344 * 129.44055 * 5 4 2 7 7 O 1.21282 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00055 * 180.02562 * 6 5 4 9 9 C 1.50703 * 109.47101 * 179.97438 * 8 6 5 10 10 N 1.29950 * 126.28876 * 90.02460 * 9 8 6 11 11 O 1.21300 * 110.25050 * 179.97438 * 10 9 8 12 12 C 1.33638 * 109.81146 * 359.97438 * 11 10 9 13 13 C 1.50708 * 126.54934 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47049 * 269.97734 * 13 12 11 15 15 C 1.50704 * 109.47048 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99770 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00188 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99740 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47287 * 60.00220 * 19 17 15 21 21 H 1.48504 * 109.46653 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46752 * 299.99786 * 19 17 15 23 23 N 1.31128 * 106.90051 * 359.77019 * 12 11 10 24 24 C 1.47148 * 118.03628 * 309.46245 * 5 4 2 25 25 C 1.53293 * 108.38754 * 50.53481 * 24 5 4 26 26 H 1.08998 * 109.51254 * 67.67269 * 25 24 5 27 27 C 1.52999 * 109.51545 * 187.77945 * 25 24 5 28 28 O 1.42963 * 109.22099 * 307.70031 * 25 24 5 29 29 H 1.09002 * 109.47153 * 180.10259 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.10450 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.10432 * 1 2 3 32 32 H 1.09009 * 109.67463 * 52.10278 * 4 2 1 33 33 H 1.08997 * 109.68641 * 172.61611 * 4 2 1 34 34 H 1.08997 * 109.47140 * 299.99547 * 8 6 5 35 35 H 1.08998 * 109.47265 * 59.99848 * 8 6 5 36 36 H 1.09002 * 109.46542 * 29.98099 * 13 12 11 37 37 H 1.09001 * 109.46798 * 149.97567 * 13 12 11 38 38 H 1.08996 * 109.47775 * 300.00076 * 14 13 12 39 39 H 1.09006 * 109.46889 * 60.00670 * 14 13 12 40 40 H 0.97003 * 120.00170 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.68589 * 170.26142 * 24 5 4 42 42 H 1.09005 * 109.68219 * 290.77661 * 24 5 4 43 43 H 1.08994 * 109.47387 * 59.99262 * 27 25 24 44 44 H 1.09007 * 109.47251 * 180.02562 * 27 25 24 45 45 H 1.09002 * 109.46755 * 299.99280 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2500 5 7 1.6960 -2.1502 -1.1344 6 6 1.0709 -2.7960 -2.1387 7 8 0.7849 -2.2018 -3.1566 8 6 0.7264 -4.2562 -1.9964 9 6 0.0376 -4.7341 -3.2488 10 7 0.6138 -5.2374 -4.2992 11 8 -0.2159 -5.5246 -5.1361 12 6 -1.4373 -5.2231 -4.6853 13 6 -2.7391 -5.4231 -5.4178 14 6 -3.0634 -4.1697 -6.2330 15 6 -4.3648 -4.3700 -6.9659 16 1 -4.9067 -5.2984 -6.8605 17 6 -4.8638 -3.3682 -7.7711 18 7 -4.2038 -2.2380 -7.8999 19 14 -6.4774 -3.6163 -8.6791 20 1 -7.5646 -3.8630 -7.6981 21 1 -6.7915 -2.4002 -9.4714 22 1 -6.3584 -4.7829 -9.5900 23 7 -1.2870 -4.7240 -3.4820 24 6 2.0521 -2.8497 0.1102 25 6 1.5396 -2.0215 1.2940 26 1 0.4497 -2.0296 1.2992 27 6 2.0614 -2.6212 2.6013 28 8 2.0075 -0.6768 1.1653 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3633 0.5122 -0.8909 31 1 -0.3634 0.5155 0.8891 32 1 1.5704 -0.3032 -2.1377 33 1 3.1240 -0.6137 -1.3214 34 1 1.6391 -4.8315 -1.8413 35 1 0.0622 -4.3913 -1.1428 36 1 -2.6516 -6.2792 -6.0868 37 1 -3.5369 -5.6048 -4.6976 38 1 -3.1508 -3.3136 -5.5640 39 1 -2.2655 -3.9882 -6.9531 40 1 -4.5547 -1.5333 -8.4667 41 1 1.5873 -3.8356 0.1233 42 1 3.1352 -2.9538 0.1759 43 1 3.1513 -2.6112 2.5961 44 1 1.6962 -2.0320 3.4426 45 1 1.7079 -3.6479 2.6966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361262017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:53 Heat of formation + Delta-G solvation = -44.621222 kcal Electronic energy + Delta-G solvation = -27501.824428 eV Core-core repulsion = 23521.661913 eV Total energy + Delta-G solvation = -3980.162515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.59189 -41.74608 -39.82058 -37.13407 -36.31053 -35.99409 -34.69074 -34.41210 -32.43216 -31.50554 -30.78101 -28.06552 -27.76505 -27.08802 -24.93100 -24.17093 -23.58135 -22.41440 -21.41687 -20.16163 -19.31901 -18.69702 -18.42844 -18.21992 -17.83635 -17.12600 -16.89703 -16.51648 -16.24000 -15.85585 -15.72459 -15.37269 -15.02989 -14.99532 -14.67343 -14.33245 -14.01960 -13.76437 -13.41225 -13.36418 -13.29380 -13.20182 -13.01781 -12.86876 -12.80967 -12.77464 -12.55859 -12.47469 -12.19379 -12.13636 -11.93789 -11.90244 -11.68807 -11.38287 -11.15579 -11.07607 -10.75404 -10.57597 -9.68723 -8.20681 -6.34309 0.09182 1.05491 1.33168 1.44618 1.48588 1.56099 1.72983 1.85896 2.42755 2.57730 2.67690 2.97338 3.14064 3.28434 3.57709 3.70538 3.83097 3.93751 4.01527 4.07620 4.13169 4.20986 4.27729 4.36033 4.40742 4.49486 4.51244 4.58130 4.66489 4.67677 4.75449 4.83574 4.90222 4.94872 4.96968 5.00836 5.14883 5.26402 5.35965 5.41477 5.50038 5.76042 6.07815 6.10821 6.14961 6.81994 6.88316 7.08602 7.36309 8.91839 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002613 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.028173 B =10712.984359 C =11608.110656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.133 0.867 4 C 0.079 3.921 5 N -0.607 5.607 6 C 0.518 3.482 7 O -0.582 6.582 8 C -0.042 4.042 9 C 0.181 3.819 10 N -0.402 5.402 11 O 0.060 5.940 12 C 0.209 3.791 13 C -0.013 4.013 14 C 0.034 3.966 15 C -0.538 4.538 16 H 0.083 0.917 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.260 1.260 23 N -0.505 5.505 24 C 0.070 3.930 25 C 0.062 3.938 26 H 0.065 0.935 27 C -0.139 4.139 28 O -0.379 6.379 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.118 0.882 38 H -0.013 1.013 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.040 -3.042 23.620 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.025 3.975 3 H 0.150 0.850 4 C -0.044 4.044 5 N -0.341 5.341 6 C 0.306 3.694 7 O -0.461 6.461 8 C -0.083 4.083 9 C -0.093 4.093 10 N -0.114 5.114 11 O 0.006 5.994 12 C -0.011 4.011 13 C -0.052 4.052 14 C -0.005 4.005 15 C -0.576 4.576 16 H 0.101 0.899 17 C -0.202 4.202 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.185 1.185 23 N -0.239 5.239 24 C -0.052 4.052 25 C 0.004 3.996 26 H 0.083 0.917 27 C -0.196 4.196 28 O -0.298 6.298 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.005 0.995 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.749 -2.443 23.461 27.819 hybrid contribution -0.944 0.569 -1.327 1.725 sum 13.804 -1.874 22.135 26.154 Atomic orbital electron populations 1.22351 0.96247 1.02267 1.02986 1.22563 0.93684 0.97291 0.83934 0.84965 1.22399 1.01564 0.80610 0.99813 1.48094 1.58180 1.11146 1.16672 1.20640 0.76798 0.89269 0.82694 1.90801 1.54704 1.69472 1.31120 1.20154 1.03670 0.92410 0.92034 1.25553 0.87288 0.98889 0.97573 1.74468 1.15583 1.20484 1.00868 1.85232 1.14661 1.61438 1.38059 1.29528 0.90762 0.91430 0.89354 1.20532 0.84575 1.01695 0.98372 1.18932 0.96380 0.91617 0.93522 1.21547 1.06446 1.02157 1.27439 0.89931 1.26098 1.01683 0.94653 0.97748 1.70147 1.41146 1.06632 1.39903 0.85363 0.78675 0.77634 0.78547 1.18699 1.21603 1.18495 1.71858 1.16273 1.20823 1.14974 1.22925 1.03152 0.97512 0.81583 1.22692 0.98830 0.82138 0.95935 0.91736 1.21752 1.02512 1.01628 0.93742 1.88021 1.72344 1.26215 1.43256 0.93162 0.92350 0.90458 0.90499 0.89208 0.82419 0.82514 0.86291 0.86421 0.99490 0.98999 0.92801 0.85976 0.88370 0.91134 0.91648 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 8.81 71.98 0.63 -2.76 16 2 C 0.08 1.38 3.93 30.69 0.12 1.50 16 3 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 4 C 0.08 1.59 6.02 86.35 0.52 2.10 16 5 N -0.61 -12.17 2.54 -817.37 -2.08 -14.24 16 6 C 0.52 14.63 7.70 87.66 0.68 15.31 16 7 O -0.58 -24.06 15.50 -3.04 -0.05 -24.11 16 8 C -0.04 -0.95 4.70 29.10 0.14 -0.81 16 9 C 0.18 6.31 6.71 138.46 0.93 7.24 16 10 N -0.40 -15.37 12.16 -60.31 -0.73 -16.11 16 11 O 0.06 2.42 11.31 74.88 0.85 3.27 16 12 C 0.21 8.41 7.77 88.38 0.69 9.10 16 13 C -0.01 -0.51 5.78 29.85 0.17 -0.34 16 14 C 0.03 1.80 4.96 29.85 0.15 1.95 16 15 C -0.54 -29.52 9.11 25.60 0.23 -29.28 16 16 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 17 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 18 N -0.94 -58.52 13.29 21.45 0.28 -58.24 16 19 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 N -0.51 -20.07 11.55 -303.18 -3.50 -23.57 16 24 C 0.07 0.76 5.83 86.35 0.50 1.26 16 25 C 0.06 0.72 3.01 30.69 0.09 0.81 16 26 H 0.06 0.84 6.25 -2.39 -0.01 0.82 16 27 C -0.14 -0.91 9.57 71.98 0.69 -0.22 16 28 O -0.38 -6.04 10.23 -148.98 -1.52 -7.57 16 29 H 0.05 1.04 6.11 -2.39 -0.01 1.03 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.08 2.00 7.08 -2.38 -0.02 1.98 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.16 2.26 8.01 -2.39 -0.02 2.24 16 35 H 0.16 2.42 7.66 -2.39 -0.02 2.40 16 36 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 37 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 38 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.12 0.66 6.05 -2.38 -0.01 0.64 16 42 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -81.78 371.69 2.28 -79.50 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.00 Total: 9.41 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.00 Total: 6.08 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -6.03 Total: -112.16 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.72 Total: -28.41 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -81.78 2.28 -79.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361262017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.880 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds