Wall clock time and date at job start Tue Mar 31 2020 14:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.51530 * 2 1 4 4 C 1.52879 * 109.58735 * 239.97736 * 2 1 3 5 5 N 1.47146 * 108.60867 * 187.92617 * 4 2 1 6 6 C 1.34779 * 120.98070 * 230.49817 * 5 4 2 7 7 O 1.21280 * 120.00077 * 179.71673 * 6 5 4 8 8 C 1.50702 * 120.00079 * 359.72217 * 6 5 4 9 9 C 1.50692 * 109.47252 * 179.97438 * 8 6 5 10 10 N 1.29947 * 126.28980 * 269.99823 * 9 8 6 11 11 O 1.21293 * 110.25357 * 180.02562 * 10 9 8 12 12 C 1.33644 * 109.81329 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.54947 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47367 * 270.02454 * 13 12 11 15 15 C 1.50698 * 109.46987 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00524 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99671 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00015 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99896 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47175 * 89.99696 * 19 17 15 21 21 H 1.48501 * 109.46966 * 209.99612 * 19 17 15 22 22 H 1.48500 * 109.47414 * 329.99511 * 19 17 15 23 23 N 1.31131 * 106.89535 * 0.02562 * 12 11 10 24 24 C 1.47148 * 118.03686 * 50.22900 * 5 4 2 25 25 C 1.53296 * 108.38313 * 309.71103 * 24 5 4 26 26 H 1.08994 * 109.51484 * 292.37925 * 25 24 5 27 27 C 1.53000 * 109.51270 * 172.22479 * 25 24 5 28 28 O 1.42958 * 109.21987 * 52.30761 * 25 24 5 29 29 H 1.08995 * 109.47109 * 299.90714 * 1 2 3 30 30 H 1.09003 * 109.46631 * 59.90057 * 1 2 3 31 31 H 1.08997 * 109.47174 * 179.89977 * 1 2 3 32 32 H 1.08997 * 109.61369 * 68.10156 * 4 2 1 33 33 H 1.08998 * 109.52206 * 307.69396 * 4 2 1 34 34 H 1.09000 * 109.47392 * 59.99182 * 8 6 5 35 35 H 1.09009 * 109.46872 * 300.00097 * 8 6 5 36 36 H 1.09002 * 109.47280 * 30.03111 * 13 12 11 37 37 H 1.09001 * 109.46752 * 150.02756 * 13 12 11 38 38 H 1.08997 * 109.47016 * 300.00387 * 14 13 12 39 39 H 1.09005 * 109.46227 * 60.00519 * 14 13 12 40 40 H 0.96994 * 119.99943 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.68715 * 69.44028 * 24 5 4 42 42 H 1.09005 * 109.68238 * 189.95387 * 24 5 4 43 43 H 1.09009 * 109.46776 * 60.00065 * 27 25 24 44 44 H 1.08997 * 109.47498 * 180.02562 * 27 25 24 45 45 H 1.09005 * 109.47220 * 300.00508 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0425 -0.7207 -1.2471 5 7 3.5012 -0.8768 -1.1330 6 6 4.3195 -0.5046 -2.1372 7 8 5.5196 -0.6365 -2.0221 8 6 3.7432 0.0757 -3.4030 9 6 4.8608 0.4070 -4.3580 10 7 5.4972 1.5374 -4.4348 11 8 6.3403 1.4863 -5.3052 12 6 6.3217 0.2817 -5.8837 13 6 7.2094 -0.1881 -7.0072 14 6 6.5458 0.1299 -8.3487 15 6 7.4333 -0.3405 -9.4722 16 1 8.3761 -0.8188 -9.2516 17 6 7.0410 -0.1611 -10.7818 18 7 7.8152 -0.5720 -11.7622 19 14 5.4099 0.6656 -11.1633 20 1 5.6143 2.1315 -11.2843 21 1 4.8724 0.1336 -12.4414 22 1 4.4464 0.3888 -10.0678 23 7 5.3827 -0.4129 -5.2876 24 6 4.0406 -1.4458 0.1123 25 6 3.4312 -0.6848 1.2953 26 1 3.8029 0.3398 1.2995 27 6 3.8210 -1.3764 2.6032 28 8 2.0075 -0.6758 1.1659 29 1 -0.3633 0.5124 0.8908 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0276 -0.0018 32 1 1.8044 -0.1325 -2.1333 33 1 1.5728 -1.7015 -1.3198 34 1 3.1869 0.9828 -3.1665 35 1 3.0741 -0.6509 -3.8640 36 1 8.1712 0.3214 -6.9478 37 1 7.3625 -1.2640 -6.9237 38 1 5.5841 -0.3796 -8.4081 39 1 6.3928 1.2059 -8.4322 40 1 7.5395 -0.4455 -12.6835 41 1 3.7757 -2.5009 0.1788 42 1 5.1253 -1.3382 0.1254 43 1 4.9068 -1.3870 2.6989 44 1 3.3871 -0.8351 3.4438 45 1 3.4467 -2.4001 2.5985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361262018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:56 Heat of formation + Delta-G solvation = -44.175627 kcal Electronic energy + Delta-G solvation = -27048.601797 eV Core-core repulsion = 23068.458605 eV Total energy + Delta-G solvation = -3980.143193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.62564 -41.65035 -39.75779 -37.16978 -36.33927 -36.04103 -34.93915 -34.49747 -32.66703 -31.54598 -30.89779 -28.05337 -27.91075 -27.04979 -24.82734 -23.71901 -23.00327 -22.51254 -21.93508 -20.50812 -19.30484 -19.06559 -18.42265 -18.29895 -17.88152 -17.24066 -16.90546 -16.39438 -16.35454 -15.81691 -15.59338 -15.31331 -15.13175 -14.79742 -14.77783 -14.58752 -13.94086 -13.78513 -13.61788 -13.48714 -13.29479 -13.09406 -13.03950 -12.88313 -12.87816 -12.82923 -12.61753 -12.34926 -12.14921 -12.05170 -11.94176 -11.81370 -11.76396 -11.45349 -11.28125 -11.12234 -10.80974 -10.76194 -9.74668 -8.28388 -6.33389 0.06607 1.04110 1.29394 1.37833 1.39512 1.50056 1.68696 1.80381 2.36474 2.54044 2.57772 2.94012 3.06927 3.24925 3.53324 3.77683 3.81452 3.90986 3.96232 4.03279 4.08334 4.24123 4.27512 4.35113 4.39420 4.41344 4.43207 4.60314 4.63089 4.70646 4.74251 4.85565 4.88952 4.91045 4.97282 5.02916 5.13151 5.23153 5.25604 5.33547 5.35800 5.58115 6.03911 6.14396 6.23990 6.73895 6.82869 7.06548 7.30944 8.87361 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025470 B = 0.002272 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.083168 B =12323.536051 C =12905.340842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.062 0.938 4 C 0.068 3.932 5 N -0.612 5.612 6 C 0.524 3.476 7 O -0.577 6.577 8 C -0.045 4.045 9 C 0.181 3.819 10 N -0.400 5.400 11 O 0.065 5.935 12 C 0.209 3.791 13 C -0.010 4.010 14 C -0.001 4.001 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.252 1.252 23 N -0.503 5.503 24 C 0.081 3.919 25 C 0.080 3.920 26 H 0.056 0.944 27 C -0.140 4.140 28 O -0.385 6.385 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.269 1.238 28.423 33.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.080 0.920 4 C -0.053 4.053 5 N -0.345 5.345 6 C 0.311 3.689 7 O -0.457 6.457 8 C -0.086 4.086 9 C -0.093 4.093 10 N -0.111 5.111 11 O 0.010 5.990 12 C -0.011 4.011 13 C -0.049 4.049 14 C -0.040 4.040 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.176 1.176 23 N -0.237 5.237 24 C -0.042 4.042 25 C 0.021 3.979 26 H 0.074 0.926 27 C -0.197 4.197 28 O -0.305 6.305 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.113 0.887 34 H 0.172 0.828 35 H 0.173 0.827 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.170 1.394 29.024 34.271 hybrid contribution 0.281 0.261 -0.938 1.014 sum -17.889 1.656 28.085 33.340 Atomic orbital electron populations 1.21755 0.90108 1.03830 1.04023 1.22577 0.97052 0.95116 0.84190 0.91956 1.22832 0.77686 1.03856 1.00956 1.48165 1.08097 1.62429 1.15799 1.20516 0.86172 0.77299 0.84869 1.90740 1.17042 1.56304 1.81571 1.20151 0.93050 1.06332 0.89027 1.25512 1.00205 0.86205 0.97383 1.74488 1.04449 1.23907 1.08242 1.85247 1.43057 1.34956 1.35751 1.29388 0.95008 0.80901 0.95807 1.20323 0.95646 1.02959 0.85969 1.19468 0.96337 0.97148 0.91000 1.21247 1.05695 1.39098 0.90640 0.93242 1.25862 1.00738 0.95848 0.96199 1.70029 1.39624 1.48725 1.00019 0.85775 0.80236 0.79250 0.78123 1.19093 1.20890 1.17586 1.71878 1.10926 1.30969 1.09916 1.22430 1.00205 0.98566 0.82966 1.22450 0.81270 0.98817 0.95324 0.92623 1.21731 1.02360 1.01368 0.94290 1.87979 1.20765 1.77680 1.44043 0.91534 0.88499 0.91245 0.85968 0.88652 0.82768 0.82685 0.87011 0.87323 0.95833 0.95547 0.92353 0.89624 0.89822 0.89879 0.90826 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.57 71.98 0.69 -0.09 16 2 C 0.07 0.69 3.39 30.55 0.10 0.79 16 3 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 4 C 0.07 0.65 5.80 86.22 0.50 1.15 16 5 N -0.61 -10.70 3.03 -818.18 -2.48 -13.18 16 6 C 0.52 12.82 7.70 87.66 0.68 13.50 16 7 O -0.58 -20.25 15.50 -3.03 -0.05 -20.30 16 8 C -0.05 -0.92 4.70 29.10 0.14 -0.78 16 9 C 0.18 5.80 6.71 138.46 0.93 6.73 16 10 N -0.40 -13.99 12.16 -60.34 -0.73 -14.73 16 11 O 0.06 2.37 11.31 74.83 0.85 3.21 16 12 C 0.21 7.70 7.77 88.38 0.69 8.38 16 13 C -0.01 -0.38 5.78 29.85 0.17 -0.20 16 14 C 0.00 -0.04 4.02 29.85 0.12 0.08 16 15 C -0.53 -28.87 9.66 25.60 0.25 -28.63 16 16 H 0.05 2.91 7.99 -2.91 -0.02 2.88 16 17 C 0.01 0.64 5.47 84.66 0.46 1.10 16 18 N -0.94 -57.40 13.96 21.45 0.30 -57.11 16 19 Si 0.94 43.10 27.47 68.60 1.88 44.98 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 23 N -0.50 -18.45 11.55 -303.21 -3.50 -21.95 16 24 C 0.08 1.38 5.93 86.36 0.51 1.89 16 25 C 0.08 1.13 3.40 30.69 0.10 1.23 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 C -0.14 -1.44 9.57 71.98 0.69 -0.75 16 28 O -0.38 -5.54 10.03 -148.98 -1.49 -7.03 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.12 0.53 6.05 -2.39 -0.01 0.52 16 33 H 0.10 0.76 8.13 -2.39 -0.02 0.74 16 34 H 0.15 2.00 7.65 -2.39 -0.02 1.98 16 35 H 0.16 2.24 8.03 -2.38 -0.02 2.22 16 36 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 38 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 39 H 0.03 1.14 7.57 -2.38 -0.02 1.13 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.77 7.08 -2.38 -0.02 1.75 16 43 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -76.48 372.79 1.74 -74.74 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.93 Total: 6.95 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 6.03 Total: 4.41 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -6.41 Total: -106.96 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.69 Total: -24.12 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.98 kcal Total: -76.48 1.74 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361262018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.564 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds