Wall clock time and date at job start Tue Mar 31 2020 14:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.51455 * 2 1 4 4 C 1.53293 * 109.51541 * 120.10139 * 2 1 3 5 5 N 1.47153 * 108.38577 * 67.62093 * 4 2 1 6 6 C 1.34777 * 120.98349 * 230.51718 * 5 4 2 7 7 O 1.21274 * 120.00135 * 0.27244 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.50699 * 109.46817 * 179.97438 * 8 6 5 10 10 N 1.29952 * 126.28937 * 269.68798 * 9 8 6 11 11 O 1.21296 * 110.25360 * 179.84011 * 10 9 8 12 12 C 1.33651 * 109.81120 * 0.43069 * 11 10 9 13 13 C 1.50697 * 126.54982 * 179.75464 * 12 11 10 14 14 C 1.52992 * 109.47221 * 269.97071 * 13 12 11 15 15 C 1.50695 * 109.47356 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00192 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00306 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99922 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99877 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47159 * 90.00243 * 19 17 15 21 21 H 1.48501 * 109.47259 * 210.00172 * 19 17 15 22 22 H 1.48500 * 109.47332 * 330.00087 * 19 17 15 23 23 N 1.31138 * 106.89445 * 359.73374 * 12 11 10 24 24 C 1.47159 * 118.03521 * 50.78215 * 5 4 2 25 25 C 1.53711 * 108.16398 * 309.16554 * 24 5 4 26 26 H 1.09002 * 109.69605 * 292.54444 * 25 24 5 27 27 C 1.52994 * 109.44382 * 172.36963 * 25 24 5 28 28 O 1.42960 * 109.14829 * 52.53240 * 25 24 5 29 29 H 1.09002 * 109.47041 * 299.89787 * 1 2 3 30 30 H 1.08999 * 109.47589 * 59.89743 * 1 2 3 31 31 H 1.08995 * 109.47216 * 179.89735 * 1 2 3 32 32 H 1.08995 * 109.68133 * 307.89735 * 4 2 1 33 33 H 1.09001 * 109.71663 * 187.35918 * 4 2 1 34 34 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 35 35 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 36 36 H 1.08993 * 109.47084 * 29.97747 * 13 12 11 37 37 H 1.09002 * 109.46651 * 149.97244 * 13 12 11 38 38 H 1.09007 * 109.47530 * 300.00133 * 14 13 12 39 39 H 1.09003 * 109.47197 * 59.99932 * 14 13 12 40 40 H 0.96997 * 119.99526 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.67802 * 68.94341 * 24 5 4 42 42 H 1.08992 * 109.68181 * 189.48950 * 24 5 4 43 43 H 1.09001 * 109.47528 * 300.38795 * 27 25 24 44 44 H 1.09004 * 109.46921 * 60.38940 * 27 25 24 45 45 H 1.08996 * 109.47309 * 180.38268 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7246 1.2500 5 7 1.6960 -2.1502 1.1345 6 6 1.0716 -2.7962 2.1392 7 8 0.7822 -2.2011 3.1555 8 6 0.7271 -4.2565 1.9970 9 6 0.0403 -4.7348 3.2502 10 7 0.6178 -5.2432 4.2975 11 8 -0.2100 -5.5259 5.1378 12 6 -1.4322 -5.2239 4.6891 13 6 -2.7327 -5.4242 5.4237 14 6 -3.2908 -6.8122 5.1032 15 6 -4.5916 -7.0123 5.8372 16 1 -4.9812 -6.2281 6.4695 17 6 -5.2841 -8.1970 5.7026 18 7 -6.4191 -8.3718 6.3436 19 14 -4.6101 -9.5537 4.6097 20 1 -3.7335 -10.4452 5.4109 21 1 -5.7362 -10.3418 4.0474 22 1 -3.8248 -8.9528 3.5018 23 7 -1.2834 -4.7195 3.4878 24 6 2.0571 -2.8512 -0.1080 25 6 1.5396 -2.0216 -1.2940 26 1 0.4496 -2.0288 -1.2995 27 6 2.0613 -2.6213 -2.6012 28 8 2.0075 -0.6769 -1.1652 29 1 -0.3633 0.5123 0.8909 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0276 -0.0018 32 1 1.5705 -0.3032 2.1377 33 1 3.1241 -0.6143 1.3217 34 1 0.0623 -4.3915 1.1438 35 1 1.6398 -4.8315 1.8411 36 1 -2.5606 -5.3406 6.4966 37 1 -3.4479 -4.6637 5.1101 38 1 -3.4631 -6.8958 4.0301 39 1 -2.5756 -7.5727 5.4167 40 1 -6.9064 -9.2051 6.2486 41 1 3.1407 -2.9512 -0.1713 42 1 1.5956 -3.8385 -0.1198 43 1 3.1513 -2.6154 -2.5942 44 1 1.7041 -3.6465 -2.6986 45 1 1.7001 -2.0293 -3.4421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361262019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:59 Heat of formation + Delta-G solvation = -15.854145 kcal Electronic energy + Delta-G solvation = -27380.844733 eV Core-core repulsion = 23401.929652 eV Total energy + Delta-G solvation = -3978.915081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.23876 -40.99422 -38.99703 -35.78129 -35.19917 -34.72431 -34.02474 -32.68837 -31.22807 -30.66400 -29.78904 -27.46551 -26.40843 -26.21524 -23.64093 -23.13744 -22.07859 -21.00871 -20.39011 -19.43263 -18.07528 -17.50320 -17.23209 -17.15239 -16.78233 -16.39341 -16.05608 -15.46818 -15.22205 -14.54884 -14.31192 -14.27985 -14.06098 -13.99293 -13.51302 -13.26103 -12.92776 -12.79141 -12.74067 -12.55131 -12.51277 -12.29781 -12.05959 -11.99380 -11.85251 -11.64950 -11.32564 -11.09123 -11.00034 -10.76183 -10.59018 -10.50698 -10.20340 -10.11545 -9.89891 -9.39085 -9.36596 -8.97321 -8.62781 -6.13250 -4.13670 1.47373 2.21905 2.25133 2.65903 3.18469 3.24805 3.26535 3.34323 3.37492 3.69883 4.04991 4.12884 4.18499 4.29541 4.37871 4.47721 4.54587 4.62365 4.74982 4.84089 4.85582 4.99093 5.00407 5.09905 5.20301 5.20517 5.27618 5.39666 5.42717 5.46555 5.48264 5.64361 5.77790 5.86516 5.94061 5.99341 6.07001 6.30129 6.46834 6.68694 6.85201 7.02309 7.15812 7.61762 7.75304 8.39050 8.46806 8.89247 9.47287 10.99424 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002457 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.718763 B =11391.250370 C =11712.748066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.115 0.885 4 C 0.084 3.916 5 N -0.617 5.617 6 C 0.527 3.473 7 O -0.520 6.520 8 C -0.045 4.045 9 C 0.177 3.823 10 N -0.387 5.387 11 O 0.074 5.926 12 C 0.213 3.787 13 C -0.019 4.019 14 C -0.007 4.007 15 C -0.525 4.525 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.266 1.266 23 N -0.487 5.487 24 C 0.075 3.925 25 C 0.068 3.932 26 H 0.071 0.929 27 C -0.145 4.145 28 O -0.371 6.371 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.026 0.974 39 H 0.019 0.981 40 H 0.265 0.735 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.374 13.859 -17.734 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.018 3.982 3 H 0.133 0.867 4 C -0.039 4.039 5 N -0.352 5.352 6 C 0.313 3.687 7 O -0.394 6.394 8 C -0.086 4.086 9 C -0.096 4.096 10 N -0.096 5.096 11 O 0.016 5.984 12 C -0.006 4.006 13 C -0.058 4.058 14 C -0.045 4.045 15 C -0.563 4.563 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.191 1.191 23 N -0.220 5.220 24 C -0.048 4.048 25 C 0.010 3.990 26 H 0.089 0.911 27 C -0.202 4.202 28 O -0.290 6.290 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.912 14.200 -17.587 30.123 hybrid contribution 0.023 -0.976 -0.293 1.019 sum 19.935 13.223 -17.880 29.865 Atomic orbital electron populations 1.22376 0.95497 1.03111 1.03114 1.22596 0.94405 0.96583 0.84665 0.86688 1.22330 1.01015 0.80573 0.99970 1.48030 1.59802 1.10879 1.16511 1.20255 0.77024 0.88561 0.82840 1.90757 1.52032 1.68102 1.28530 1.19815 1.01818 0.93426 0.93535 1.24680 0.87829 1.00398 0.96725 1.74505 1.15627 1.18843 1.00630 1.85269 1.14677 1.61136 1.37306 1.29583 0.90525 0.90766 0.89760 1.20543 0.83796 1.02799 0.98711 1.19619 0.97102 0.89775 0.98051 1.20937 1.03975 1.02562 1.28791 0.90351 1.24953 0.94595 0.98224 0.95247 1.69894 1.15069 1.26160 1.42385 0.86818 0.78873 0.82304 0.81592 1.20085 1.21157 1.19059 1.71862 1.14808 1.21198 1.14180 1.22669 1.01783 0.96716 0.83613 1.22586 0.98934 0.82738 0.94785 0.91082 1.21748 1.02345 1.00777 0.95369 1.88024 1.72262 1.25189 1.43513 0.91055 0.91513 0.91969 0.87895 0.90561 0.85769 0.86279 0.88430 0.87605 0.95584 0.96251 0.92494 0.89981 0.88596 0.91488 0.90568 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.81 37.16 0.33 -1.10 16 2 C 0.08 0.55 3.93 -26.58 -0.10 0.45 16 3 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.08 0.71 6.02 -3.53 -0.02 0.69 16 5 N -0.62 -5.72 2.53 -172.02 -0.44 -6.15 16 6 C 0.53 6.68 7.70 -10.98 -0.08 6.60 16 7 O -0.52 -8.93 15.50 5.56 0.09 -8.85 16 8 C -0.04 -0.52 4.70 -29.03 -0.14 -0.65 16 9 C 0.18 2.99 6.71 -156.37 -1.05 1.94 16 10 N -0.39 -7.03 12.16 30.90 0.38 -6.66 16 11 O 0.07 1.39 11.31 18.08 0.20 1.59 16 12 C 0.21 4.01 7.77 -13.05 -0.10 3.91 16 13 C -0.02 -0.37 5.78 -27.89 -0.16 -0.53 16 14 C -0.01 -0.16 4.02 -27.89 -0.11 -0.27 16 15 C -0.52 -14.19 9.66 -34.44 -0.33 -14.53 16 16 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 19 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 23 N -0.49 -9.18 11.55 -9.86 -0.11 -9.30 16 24 C 0.08 0.47 5.86 -3.31 -0.02 0.45 16 25 C 0.07 0.43 3.03 -26.36 -0.08 0.35 16 26 H 0.07 0.48 6.25 -51.93 -0.32 0.16 16 27 C -0.14 -0.65 9.57 37.15 0.36 -0.29 16 28 O -0.37 -2.96 10.22 -35.23 -0.36 -3.32 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.56 6.11 -51.93 -0.32 0.24 16 32 H 0.10 1.02 7.07 -51.93 -0.37 0.66 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 1.13 7.67 -51.93 -0.40 0.73 16 35 H 0.12 1.03 8.00 -51.93 -0.42 0.62 16 36 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 39 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.43 6.05 -51.93 -0.31 0.11 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -34.60 368.12 -6.93 -41.52 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.72 Total: -3.79 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.62 Total: -1.05 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.60 Total: -48.13 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.60 -6.93 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361262019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.669 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds