Wall clock time and date at job start Tue Mar 31 2020 14:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21591 * 119.99730 * 119.99906 * 4 2 1 6 6 N 1.32905 * 119.99970 * 300.00063 * 4 2 1 7 7 C 1.33303 * 120.00121 * 179.97438 * 6 4 2 8 8 C 1.40989 * 126.35464 * 0.02807 * 7 6 4 9 9 C 1.35119 * 108.23905 * 179.97438 * 8 7 6 10 10 N 1.36337 * 108.90219 * 359.97438 * 9 8 7 11 11 C 1.46495 * 125.86388 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47278 * 85.02859 * 11 10 9 13 13 H 1.08006 * 119.99985 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00465 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00111 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99548 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47230 * 90.00181 * 16 14 12 18 18 H 1.48502 * 109.46930 * 209.99844 * 16 14 12 19 19 H 1.48505 * 109.47514 * 329.99903 * 16 14 12 20 20 N 1.37283 * 126.36096 * 179.71628 * 7 6 4 21 21 H 0.97001 * 126.34764 * 359.96451 * 20 7 6 22 22 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 23 23 O 1.20822 * 120.00115 * 240.00066 * 22 2 1 24 24 O 1.34234 * 119.99749 * 59.99914 * 22 2 1 25 25 C 1.45203 * 117.00028 * 179.97438 * 24 22 2 26 26 C 1.53005 * 109.46823 * 59.99891 * 25 24 22 27 27 C 1.52996 * 109.47034 * 179.97438 * 25 24 22 28 28 C 1.53003 * 109.47014 * 300.00436 * 25 24 22 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.08003 * 125.87772 * 359.97438 * 8 7 6 33 33 H 1.08004 * 125.54717 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.46690 * 205.02374 * 11 10 9 35 35 H 1.09000 * 109.47526 * 325.02607 * 11 10 9 36 36 H 0.97006 * 120.00011 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.46736 * 60.00455 * 26 25 24 38 38 H 1.09000 * 109.46966 * 179.97438 * 26 25 24 39 39 H 1.08996 * 109.47244 * 300.00459 * 26 25 24 40 40 H 1.09002 * 109.46790 * 60.00316 * 27 25 24 41 41 H 1.09004 * 109.46632 * 179.97438 * 27 25 24 42 42 H 1.08991 * 109.47430 * 300.00133 * 27 25 24 43 43 H 1.08998 * 109.47403 * 60.00197 * 28 25 24 44 44 H 1.09000 * 109.46695 * 180.02562 * 28 25 24 45 45 H 1.09002 * 109.46913 * 299.99444 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7314 -1.6990 1.1190 6 7 1.7113 -0.2562 2.4376 7 6 2.1552 -0.8848 3.5261 8 6 2.9690 -2.0358 3.5530 9 6 3.1990 -2.3610 4.8442 10 7 2.5630 -1.4606 5.6465 11 6 2.5655 -1.4646 7.1114 12 6 3.7936 -0.7502 7.6137 13 1 4.5018 -0.3350 6.9118 14 6 4.0132 -0.6265 8.9692 15 7 5.0847 -0.0026 9.4075 16 14 2.7881 -1.3439 10.1831 17 1 3.1681 -2.7438 10.5011 18 1 2.7932 -0.5347 11.4283 19 1 1.4289 -1.3236 9.5852 20 7 1.9097 -0.5283 4.8289 21 1 1.3814 0.2282 5.1282 22 6 2.0324 -0.7104 -1.2304 23 8 2.7270 -1.6928 -1.1195 24 8 1.7081 -0.2518 -2.4496 25 6 2.2278 -0.9857 -3.5896 26 6 1.7177 -2.4275 -3.5435 27 6 1.7556 -0.3193 -4.8833 28 6 3.7571 -0.9841 -3.5431 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 3.3440 -2.5662 2.6902 33 1 3.7903 -3.1980 5.1851 34 1 1.6738 -0.9556 7.4776 35 1 2.5706 -2.4933 7.4720 36 1 5.2395 0.0842 10.3612 37 1 0.6282 -2.4286 -3.5767 38 1 2.1074 -2.9783 -4.3996 39 1 2.0536 -2.9025 -2.6218 40 1 2.1187 0.7080 -4.9163 41 1 2.1462 -0.8700 -5.7391 42 1 0.6662 -0.3208 -4.9163 43 1 4.0931 -1.4592 -2.6214 44 1 4.1472 -1.5346 -4.3991 45 1 4.1205 0.0430 -3.5759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413466958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:42 Heat of formation + Delta-G solvation = -35.972471 kcal Electronic energy + Delta-G solvation = -27227.363226 eV Core-core repulsion = 23247.575749 eV Total energy + Delta-G solvation = -3979.787477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.42094 -41.90937 -40.01811 -37.76722 -35.90043 -35.30758 -34.59676 -34.00641 -32.58607 -32.47785 -28.88601 -28.37121 -28.25760 -26.28475 -25.05667 -23.92599 -22.81995 -22.61736 -20.74400 -20.04393 -19.27987 -18.51969 -18.10658 -17.43951 -17.08478 -16.81313 -16.65822 -16.36703 -16.14991 -15.69218 -15.49709 -15.03677 -14.89147 -14.75630 -14.56298 -14.40358 -14.28592 -13.90294 -13.51551 -13.28529 -13.22841 -13.08125 -12.97767 -12.87884 -12.80449 -12.68379 -12.57994 -12.31858 -12.22363 -12.00464 -11.85190 -11.32778 -11.26925 -10.93703 -10.91219 -10.67394 -10.54622 -9.76007 -8.50183 -8.41672 -6.57337 0.11740 0.51733 1.31707 1.39343 1.40380 1.48997 1.49644 1.64273 2.25507 2.68903 2.81827 2.92304 3.36507 3.67022 3.79186 3.81865 3.85580 3.98805 4.13739 4.20694 4.25835 4.40761 4.54075 4.58870 4.60747 4.72204 4.76911 4.81395 4.83785 4.86888 4.90748 4.93207 5.06515 5.13272 5.14521 5.22074 5.27230 5.28998 5.34751 5.60488 5.85905 5.99146 6.09784 6.46141 6.54874 6.80231 6.97620 7.08908 7.82729 8.73201 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.002197 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.411862 B =12743.302577 C =12933.947669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 H 0.140 0.860 4 C 0.481 3.519 5 O -0.580 6.580 6 N -0.699 5.699 7 C 0.458 3.542 8 C -0.346 4.346 9 C 0.181 3.819 10 N -0.343 5.343 11 C 0.233 3.767 12 C -0.567 4.567 13 H 0.033 0.967 14 C 0.022 3.978 15 N -0.935 5.935 16 Si 0.950 3.050 17 H -0.257 1.257 18 H -0.289 1.289 19 H -0.231 1.231 20 N -0.457 5.457 21 H 0.456 0.544 22 C 0.461 3.539 23 O -0.491 6.491 24 O -0.352 6.352 25 C 0.104 3.896 26 C -0.179 4.179 27 C -0.132 4.132 28 C -0.181 4.181 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.227 0.773 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.273 0.727 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -2.230 -19.112 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.100 4.100 3 H 0.157 0.843 4 C 0.266 3.734 5 O -0.460 6.460 6 N -0.464 5.464 7 C 0.208 3.792 8 C -0.378 4.378 9 C 0.036 3.964 10 N -0.128 5.128 11 C 0.115 3.885 12 C -0.605 4.605 13 H 0.051 0.949 14 C -0.178 4.178 15 N -0.573 5.573 16 Si 0.772 3.228 17 H -0.181 1.181 18 H -0.214 1.214 19 H -0.154 1.154 20 N -0.180 5.180 21 H 0.305 0.695 22 C 0.303 3.697 23 O -0.377 6.377 24 O -0.270 6.270 25 C 0.069 3.931 26 C -0.236 4.236 27 C -0.189 4.189 28 C -0.238 4.238 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.187 0.813 33 H 0.243 0.757 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.272 -2.213 -18.669 21.920 hybrid contribution 0.666 -0.164 0.959 1.179 sum -10.606 -2.376 -17.710 20.779 Atomic orbital electron populations 1.21528 0.88296 1.02505 1.05064 1.20624 1.01069 1.01378 0.86971 0.84260 1.20701 0.80060 0.83682 0.88957 1.90663 1.38156 1.28080 1.89142 1.68641 1.42325 1.39326 0.96081 1.19342 0.86888 0.88595 0.84384 1.22391 1.13210 1.04282 0.97943 1.23435 0.90545 0.92811 0.89568 1.47520 1.42160 1.18267 1.04818 1.20317 0.98105 1.01136 0.68946 1.21411 1.07507 1.38743 0.92852 0.94912 1.25848 0.97277 0.94478 1.00245 1.70036 1.28845 1.42538 1.15881 0.85695 0.80047 0.79105 0.77988 1.18131 1.21446 1.15360 1.44476 1.47595 1.25292 1.00680 0.69488 1.23373 0.77973 0.83223 0.85153 1.90692 1.34443 1.25666 1.86908 1.86515 1.70012 1.56014 1.14451 1.22496 0.93931 0.92081 0.84612 1.22440 1.01910 0.95494 1.03766 1.21845 1.02775 1.01571 0.92691 1.22455 0.94555 1.02992 1.03789 0.93629 0.88776 0.89396 0.81308 0.75685 0.91175 0.88711 0.91759 0.91460 0.89084 0.93063 0.91093 0.88328 0.90852 0.93089 0.89018 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.03 71.98 0.65 -2.06 16 2 C -0.08 -2.35 3.24 -12.29 -0.04 -2.39 16 3 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 4 C 0.48 18.74 7.03 87.95 0.62 19.36 16 5 O -0.58 -26.37 11.09 19.44 0.22 -26.15 16 6 N -0.70 -26.38 10.31 -309.87 -3.19 -29.58 16 7 C 0.46 17.11 8.07 133.83 1.08 18.19 16 8 C -0.35 -12.75 9.51 22.23 0.21 -12.54 16 9 C 0.18 5.66 11.46 83.27 0.95 6.61 16 10 N -0.34 -11.43 3.63 -350.81 -1.27 -12.71 16 11 C 0.23 8.06 5.26 85.63 0.45 8.51 16 12 C -0.57 -26.90 9.94 25.60 0.25 -26.65 16 13 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 14 C 0.02 1.09 5.47 84.66 0.46 1.55 16 15 N -0.94 -51.99 13.96 21.45 0.30 -51.69 16 16 Si 0.95 34.71 27.47 68.60 1.88 36.60 16 17 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 18 H -0.29 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.23 -7.12 6.54 99.48 0.65 -6.47 16 20 N -0.46 -15.01 7.37 -54.81 -0.40 -15.42 16 21 H 0.46 12.71 8.96 -213.28 -1.91 10.80 16 22 C 0.46 14.65 6.56 71.23 0.47 15.11 16 23 O -0.49 -19.09 9.68 29.73 0.29 -18.80 16 24 O -0.35 -9.03 9.79 -51.45 -0.50 -9.53 16 25 C 0.10 2.20 1.13 -10.79 -0.01 2.19 16 26 C -0.18 -3.81 8.37 71.98 0.60 -3.21 16 27 C -0.13 -1.73 8.85 71.98 0.64 -1.09 16 28 C -0.18 -3.98 8.37 71.98 0.60 -3.38 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.68 8.11 -2.39 -0.02 1.66 16 31 H 0.09 1.98 8.05 -2.38 -0.02 1.96 16 32 H 0.17 6.90 5.77 -2.91 -0.02 6.89 16 33 H 0.23 5.15 8.06 -2.91 -0.02 5.13 16 34 H 0.07 2.21 7.20 -2.38 -0.02 2.20 16 35 H 0.10 2.78 7.57 -2.39 -0.02 2.76 16 36 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.48 5.89 -2.39 -0.01 1.47 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.51 5.89 -2.39 -0.01 1.50 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.00 371.49 3.29 -69.71 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.96 Total: 37.36 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.94 Total: 20.21 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.57 Total: -109.39 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: 0.00 Total: -54.48 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 1.88 Total: 36.60 kcal Total: -73.00 3.29 -69.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413466958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.733 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds