Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 O 1.21592 * 119.99624 * 239.99957 * 4 2 1 6 6 N 1.32904 * 120.00271 * 59.99523 * 4 2 1 7 7 C 1.33306 * 120.00225 * 179.97438 * 6 4 2 8 8 C 1.40989 * 126.35516 * 0.03050 * 7 6 4 9 9 C 1.35128 * 108.23859 * 179.97438 * 8 7 6 10 10 N 1.36334 * 108.89914 * 359.97438 * 9 8 7 11 11 C 1.46495 * 125.86316 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47194 * 84.97894 * 11 10 9 13 13 H 1.08004 * 119.99606 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00115 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99677 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47478 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47490 * 119.99979 * 16 14 12 19 19 H 1.48505 * 109.46701 * 239.99624 * 16 14 12 20 20 N 1.37277 * 126.36130 * 179.71375 * 7 6 4 21 21 H 0.97002 * 126.34550 * 0.02562 * 20 7 6 22 22 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 23 23 O 1.20833 * 119.99442 * 119.99997 * 22 2 1 24 24 O 1.34225 * 120.00258 * 300.00808 * 22 2 1 25 25 C 1.45198 * 117.00155 * 179.97438 * 24 22 2 26 26 C 1.53000 * 109.47304 * 59.99469 * 25 24 22 27 27 C 1.53002 * 109.47354 * 179.97438 * 25 24 22 28 28 C 1.53006 * 109.46936 * 299.99704 * 25 24 22 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.07999 * 125.87675 * 359.93428 * 8 7 6 33 33 H 1.08001 * 125.54601 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47709 * 204.98069 * 11 10 9 35 35 H 1.09005 * 109.47527 * 324.98237 * 11 10 9 36 36 H 0.96999 * 119.99816 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47115 * 60.00135 * 26 25 24 38 38 H 1.08998 * 109.47349 * 180.02562 * 26 25 24 39 39 H 1.09001 * 109.47077 * 300.00177 * 26 25 24 40 40 H 1.08993 * 109.47027 * 59.99508 * 27 25 24 41 41 H 1.08998 * 109.47049 * 179.97438 * 27 25 24 42 42 H 1.09000 * 109.46905 * 299.99766 * 27 25 24 43 43 H 1.09001 * 109.47285 * 59.99921 * 28 25 24 44 44 H 1.08998 * 109.47196 * 179.97438 * 28 25 24 45 45 H 1.09003 * 109.46874 * 299.99605 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7315 -1.6989 -1.1190 6 7 1.7113 -0.2562 -2.4376 7 6 2.1561 -0.8842 -3.5261 8 6 2.9700 -2.0351 -3.5530 9 6 3.2001 -2.3602 -4.8443 10 7 2.5632 -1.4605 -5.6464 11 6 2.5662 -1.4640 -7.1114 12 6 1.4841 -2.3847 -7.6138 13 1 0.8571 -2.9146 -6.9119 14 6 1.2951 -2.5514 -8.9693 15 7 2.0596 -1.9073 -9.8240 16 14 -0.0467 -3.6921 -9.5919 17 1 -0.7609 -4.2930 -8.4370 18 1 -1.0069 -2.9206 -10.4213 19 1 0.5615 -4.7701 -10.4126 20 7 1.9018 -0.5339 -4.8288 21 1 1.3653 0.2168 -5.1280 22 6 2.0324 -0.7104 1.2304 23 8 2.7271 -1.6928 1.1195 24 8 1.7080 -0.2519 2.4496 25 6 2.2268 -0.9865 3.5896 26 6 3.7561 -0.9860 3.5436 27 6 1.7557 -0.3193 4.8834 28 6 1.7156 -2.4279 3.5430 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.3455 -2.5651 -2.6902 33 1 3.7922 -3.1967 -5.1852 34 1 2.3827 -0.4538 -7.4776 35 1 3.5346 -1.8108 -7.4720 36 1 1.9264 -2.0243 -10.7776 37 1 4.1203 0.0408 3.5768 38 1 4.1455 -1.5378 4.3992 39 1 4.0920 -1.4611 2.6219 40 1 0.6663 -0.3193 4.9163 41 1 2.1447 -0.8710 5.7392 42 1 2.1202 0.7074 4.9164 43 1 2.0515 -2.9029 2.6213 44 1 2.1053 -2.9794 4.3986 45 1 0.6260 -2.4281 3.5758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413466959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = -22.999532 kcal Electronic energy + Delta-G solvation = -27213.576961 eV Core-core repulsion = 23234.352033 eV Total energy + Delta-G solvation = -3979.224928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97213 -40.70430 -38.61818 -36.58196 -34.30524 -34.22222 -32.95976 -32.82117 -31.11395 -30.56589 -27.53837 -27.48185 -26.85213 -25.13493 -23.74478 -22.66919 -21.45498 -21.24245 -19.58585 -18.73987 -17.22253 -17.05524 -16.63879 -16.38213 -15.90073 -15.37784 -15.18117 -14.94545 -14.64784 -14.52335 -14.20151 -13.91551 -13.70256 -13.61063 -13.07260 -12.79319 -12.65063 -12.61001 -12.36140 -12.21780 -12.05717 -11.98680 -11.92515 -11.88469 -11.62235 -11.35982 -11.23638 -11.10898 -11.07978 -10.56720 -10.39479 -10.32478 -9.69387 -9.59664 -9.24453 -9.06260 -8.95844 -8.23263 -7.01147 -6.53668 -4.69420 1.61552 2.00093 2.51848 2.72259 2.96663 3.02520 3.12329 3.17280 4.02453 4.18648 4.28433 4.61120 4.64750 4.70091 4.74042 4.78580 4.82299 5.21453 5.27910 5.32386 5.35759 5.40288 5.54864 5.59275 5.69212 5.73969 5.77003 5.82514 5.85415 5.94598 5.96375 6.17765 6.22592 6.26095 6.42355 6.47610 6.51177 6.68566 6.74080 7.34118 7.42379 7.47513 7.58254 7.90873 8.11947 8.29961 8.40328 9.01544 9.33475 10.49028 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.002202 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.256915 B =12714.665188 C =12800.105723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 H 0.121 0.879 4 C 0.495 3.505 5 O -0.546 6.546 6 N -0.699 5.699 7 C 0.471 3.529 8 C -0.332 4.332 9 C 0.163 3.837 10 N -0.339 5.339 11 C 0.253 3.747 12 C -0.558 4.558 13 H 0.071 0.929 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.278 1.278 20 N -0.465 5.465 21 H 0.446 0.554 22 C 0.460 3.540 23 O -0.457 6.457 24 O -0.357 6.357 25 C 0.117 3.883 26 C -0.183 4.183 27 C -0.139 4.139 28 C -0.183 4.183 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.185 0.815 33 H 0.189 0.811 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.272 0.728 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 3.952 19.075 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.100 4.100 3 H 0.139 0.861 4 C 0.278 3.722 5 O -0.424 6.424 6 N -0.464 5.464 7 C 0.221 3.779 8 C -0.364 4.364 9 C 0.017 3.983 10 N -0.124 5.124 11 C 0.137 3.863 12 C -0.597 4.597 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.522 5.522 16 Si 0.736 3.264 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.204 1.204 20 N -0.187 5.187 21 H 0.293 0.707 22 C 0.300 3.700 23 O -0.340 6.340 24 O -0.276 6.276 25 C 0.081 3.919 26 C -0.240 4.240 27 C -0.196 4.196 28 C -0.240 4.240 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.201 0.799 33 H 0.206 0.794 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.002 3.919 18.564 18.973 hybrid contribution -0.547 -0.735 -0.556 1.072 sum -0.549 3.184 18.007 18.295 Atomic orbital electron populations 1.21557 0.90619 1.02783 1.03543 1.20573 0.99307 1.01205 0.88903 0.86140 1.19942 0.80635 0.83873 0.87770 1.90672 1.36788 1.26409 1.88565 1.68536 1.42052 1.39826 0.96014 1.19118 0.86553 0.88318 0.83868 1.22493 1.12786 1.03716 0.97439 1.22901 0.92850 0.91973 0.90562 1.48074 1.39980 1.18789 1.05562 1.20105 1.00275 1.00112 0.65851 1.21440 1.17837 1.27971 0.92403 0.91132 1.24962 0.96550 0.95813 0.96218 1.69903 1.38206 1.41051 1.03089 0.86231 0.80941 0.80161 0.79031 1.19376 1.20487 1.20376 1.44554 1.47290 1.25471 1.01351 0.70720 1.23279 0.78661 0.83812 0.84272 1.90686 1.32937 1.24081 1.86305 1.86526 1.70352 1.55947 1.14737 1.22090 0.93978 0.91715 0.84166 1.22486 0.94186 1.02729 1.04621 1.21829 1.02255 1.01271 0.94214 1.22484 1.01486 0.95425 1.04605 0.92596 0.91499 0.89766 0.79859 0.79425 0.92961 0.91270 0.91853 0.92177 0.91372 0.89553 0.91593 0.90639 0.91602 0.89554 0.91391 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.03 37.16 0.34 -1.29 16 2 C -0.08 -1.18 3.24 -92.92 -0.30 -1.48 16 3 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 4 C 0.49 9.52 7.03 -11.82 -0.08 9.43 16 5 O -0.55 -12.00 11.09 -19.23 -0.21 -12.21 16 6 N -0.70 -13.28 10.31 -11.59 -0.12 -13.40 16 7 C 0.47 8.94 8.07 -155.19 -1.25 7.68 16 8 C -0.33 -6.17 9.51 -39.65 -0.38 -6.55 16 9 C 0.16 2.73 11.46 -16.66 -0.19 2.54 16 10 N -0.34 -6.15 3.63 -62.23 -0.23 -6.38 16 11 C 0.25 5.16 6.19 -5.20 -0.03 5.13 16 12 C -0.56 -13.08 9.39 -34.44 -0.32 -13.40 16 13 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 14 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -22.24 13.29 55.43 0.74 -21.50 16 16 Si 0.91 19.09 29.54 -169.99 -5.02 14.07 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 N -0.46 -8.06 7.37 31.32 0.23 -7.83 16 21 H 0.45 6.73 8.96 -182.55 -1.64 5.09 16 22 C 0.46 7.25 6.56 36.00 0.24 7.49 16 23 O -0.46 -8.52 9.68 -26.87 -0.26 -8.78 16 24 O -0.36 -4.76 9.79 -39.24 -0.38 -5.14 16 25 C 0.12 1.31 1.13 -90.62 -0.10 1.21 16 26 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 27 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 28 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 31 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.18 3.65 5.77 -52.49 -0.30 3.35 16 33 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.22 5.89 -51.93 -0.31 0.91 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.23 5.89 -51.93 -0.31 0.92 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -29.87 375.09 -8.85 -38.71 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.01 Total: 8.72 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.24 Total: 8.09 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.62 Total: -49.11 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.86 Total: -26.13 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.87 -8.85 -38.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413466959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.715 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds