Wall clock time and date at job start Tue Mar 31 2020 14:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 O 1.21592 * 119.99624 * 239.99957 * 4 2 1 6 6 N 1.32904 * 120.00271 * 59.99523 * 4 2 1 7 7 C 1.33306 * 120.00225 * 179.97438 * 6 4 2 8 8 C 1.40989 * 126.35516 * 0.03050 * 7 6 4 9 9 C 1.35128 * 108.23859 * 179.97438 * 8 7 6 10 10 N 1.36334 * 108.89914 * 359.97438 * 9 8 7 11 11 C 1.46495 * 125.86316 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47194 * 84.97894 * 11 10 9 13 13 H 1.08004 * 119.99606 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00183 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00115 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99677 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47478 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47490 * 119.99979 * 16 14 12 19 19 H 1.48505 * 109.46701 * 239.99624 * 16 14 12 20 20 N 1.37277 * 126.36130 * 179.71375 * 7 6 4 21 21 H 0.97002 * 126.34550 * 0.02562 * 20 7 6 22 22 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 23 23 O 1.20833 * 119.99442 * 119.99997 * 22 2 1 24 24 O 1.34225 * 120.00258 * 300.00808 * 22 2 1 25 25 C 1.45198 * 117.00155 * 179.97438 * 24 22 2 26 26 C 1.53000 * 109.47304 * 59.99469 * 25 24 22 27 27 C 1.53002 * 109.47354 * 179.97438 * 25 24 22 28 28 C 1.53006 * 109.46936 * 299.99704 * 25 24 22 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.07999 * 125.87675 * 359.93428 * 8 7 6 33 33 H 1.08001 * 125.54601 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.47709 * 204.98069 * 11 10 9 35 35 H 1.09005 * 109.47527 * 324.98237 * 11 10 9 36 36 H 0.96999 * 119.99816 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47115 * 60.00135 * 26 25 24 38 38 H 1.08998 * 109.47349 * 180.02562 * 26 25 24 39 39 H 1.09001 * 109.47077 * 300.00177 * 26 25 24 40 40 H 1.08993 * 109.47027 * 59.99508 * 27 25 24 41 41 H 1.08998 * 109.47049 * 179.97438 * 27 25 24 42 42 H 1.09000 * 109.46905 * 299.99766 * 27 25 24 43 43 H 1.09001 * 109.47285 * 59.99921 * 28 25 24 44 44 H 1.08998 * 109.47196 * 179.97438 * 28 25 24 45 45 H 1.09003 * 109.46874 * 299.99605 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7315 -1.6989 -1.1190 6 7 1.7113 -0.2562 -2.4376 7 6 2.1561 -0.8842 -3.5261 8 6 2.9700 -2.0351 -3.5530 9 6 3.2001 -2.3602 -4.8443 10 7 2.5632 -1.4605 -5.6464 11 6 2.5662 -1.4640 -7.1114 12 6 1.4841 -2.3847 -7.6138 13 1 0.8571 -2.9146 -6.9119 14 6 1.2951 -2.5514 -8.9693 15 7 2.0596 -1.9073 -9.8240 16 14 -0.0467 -3.6921 -9.5919 17 1 -0.7609 -4.2930 -8.4370 18 1 -1.0069 -2.9206 -10.4213 19 1 0.5615 -4.7701 -10.4126 20 7 1.9018 -0.5339 -4.8288 21 1 1.3653 0.2168 -5.1280 22 6 2.0324 -0.7104 1.2304 23 8 2.7271 -1.6928 1.1195 24 8 1.7080 -0.2519 2.4496 25 6 2.2268 -0.9865 3.5896 26 6 3.7561 -0.9860 3.5436 27 6 1.7557 -0.3193 4.8834 28 6 1.7156 -2.4279 3.5430 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.3455 -2.5651 -2.6902 33 1 3.7922 -3.1967 -5.1852 34 1 2.3827 -0.4538 -7.4776 35 1 3.5346 -1.8108 -7.4720 36 1 1.9264 -2.0243 -10.7776 37 1 4.1203 0.0408 3.5768 38 1 4.1455 -1.5378 4.3992 39 1 4.0920 -1.4611 2.6219 40 1 0.6663 -0.3193 4.9163 41 1 2.1447 -0.8710 5.7392 42 1 2.1202 0.7074 4.9164 43 1 2.0515 -2.9029 2.6213 44 1 2.1053 -2.9794 4.3986 45 1 0.6260 -2.4281 3.5758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413466959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:45 Heat of formation + Delta-G solvation = -39.705342 kcal Electronic energy + Delta-G solvation = -27214.301379 eV Core-core repulsion = 23234.352033 eV Total energy + Delta-G solvation = -3979.949346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39165 -41.89928 -39.99627 -37.75627 -35.93142 -35.30240 -34.58106 -33.99100 -32.55247 -32.15242 -28.51491 -28.36658 -28.25460 -26.29383 -25.27323 -24.09366 -22.81028 -22.59213 -20.74450 -20.04609 -18.88989 -18.46348 -18.05802 -17.43137 -17.07398 -16.79686 -16.68465 -16.40308 -16.04090 -15.75631 -15.52866 -15.05309 -14.96280 -14.60535 -14.46403 -14.32349 -14.19418 -13.69879 -13.52461 -13.28099 -13.11954 -13.06942 -12.94303 -12.87499 -12.80080 -12.75649 -12.66811 -12.34672 -12.30746 -12.03206 -12.00042 -11.32144 -11.21034 -10.91926 -10.78737 -10.65419 -10.52465 -9.73744 -8.61675 -8.28501 -6.56939 0.16161 0.55271 1.32295 1.36714 1.42244 1.50365 1.53305 1.64956 2.30036 2.73714 2.84065 2.94216 3.38364 3.67817 3.79577 3.82237 3.88479 3.99164 4.14388 4.21605 4.33242 4.46199 4.59496 4.60974 4.75603 4.77250 4.83031 4.84362 4.85112 4.91075 4.92313 4.93217 5.07805 5.14830 5.24511 5.27389 5.29204 5.35076 5.50703 5.61002 5.69118 5.94787 6.09737 6.41156 6.61079 6.82994 6.98506 7.16940 7.85028 8.65457 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.002202 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.256915 B =12714.665188 C =12800.105723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.077 4.077 3 H 0.143 0.857 4 C 0.481 3.519 5 O -0.581 6.581 6 N -0.700 5.700 7 C 0.456 3.544 8 C -0.346 4.346 9 C 0.179 3.821 10 N -0.343 5.343 11 C 0.266 3.734 12 C -0.565 4.565 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.912 5.912 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.274 1.274 20 N -0.457 5.457 21 H 0.454 0.546 22 C 0.462 3.538 23 O -0.491 6.491 24 O -0.352 6.352 25 C 0.104 3.896 26 C -0.180 4.180 27 C -0.132 4.132 28 C -0.180 4.180 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.274 0.726 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 4.422 20.304 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.099 4.099 3 H 0.161 0.839 4 C 0.266 3.734 5 O -0.462 6.462 6 N -0.465 5.465 7 C 0.207 3.793 8 C -0.378 4.378 9 C 0.033 3.967 10 N -0.128 5.128 11 C 0.149 3.851 12 C -0.603 4.603 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.550 5.550 16 Si 0.789 3.211 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.200 1.200 20 N -0.180 5.180 21 H 0.303 0.697 22 C 0.303 3.697 23 O -0.377 6.377 24 O -0.270 6.270 25 C 0.069 3.931 26 C -0.237 4.237 27 C -0.189 4.189 28 C -0.237 4.237 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.240 0.760 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.764 4.421 19.803 20.305 hybrid contribution -0.287 -0.885 -0.879 1.280 sum -1.051 3.536 18.924 19.280 Atomic orbital electron populations 1.21532 0.88621 1.02346 1.05040 1.20614 1.00802 1.01512 0.86978 0.83948 1.20689 0.80106 0.83704 0.88943 1.90661 1.38356 1.28010 1.89139 1.68637 1.42041 1.39780 0.96065 1.19342 0.86911 0.88758 0.84335 1.22367 1.13581 1.04072 0.97807 1.23404 0.91797 0.91894 0.89588 1.47938 1.40315 1.19321 1.05184 1.19802 0.99483 0.99097 0.66737 1.21619 1.18236 1.28092 0.92357 0.92251 1.25590 0.98157 0.96954 0.96542 1.69961 1.39438 1.42217 1.03362 0.85403 0.78799 0.78645 0.78239 1.19799 1.20357 1.19968 1.44516 1.47219 1.25560 1.00749 0.69653 1.23375 0.77971 0.83228 0.85143 1.90694 1.34498 1.25603 1.86907 1.86512 1.70068 1.55957 1.14451 1.22494 0.94056 0.91956 0.84614 1.22449 0.94403 1.03057 1.03806 1.21845 1.02732 1.01610 0.92693 1.22446 1.01844 0.95638 1.03761 0.93949 0.88689 0.89501 0.81290 0.75973 0.93517 0.90948 0.91679 0.91556 0.89047 0.93047 0.90981 0.88331 0.90972 0.93102 0.89063 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 9.03 71.98 0.65 -2.22 16 2 C -0.08 -2.32 3.24 -12.29 -0.04 -2.36 16 3 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 4 C 0.48 18.83 7.03 87.95 0.62 19.45 16 5 O -0.58 -26.53 11.09 19.43 0.22 -26.32 16 6 N -0.70 -26.73 10.31 -309.88 -3.19 -29.92 16 7 C 0.46 17.36 8.07 133.83 1.08 18.44 16 8 C -0.35 -12.97 9.51 22.23 0.21 -12.75 16 9 C 0.18 5.81 11.46 83.28 0.95 6.76 16 10 N -0.34 -12.15 3.63 -350.80 -1.27 -13.42 16 11 C 0.27 10.62 6.19 85.63 0.53 11.15 16 12 C -0.56 -25.99 9.39 25.60 0.24 -25.75 16 13 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 14 C 0.03 1.42 5.46 84.66 0.46 1.88 16 15 N -0.91 -45.15 13.29 21.45 0.28 -44.87 16 16 Si 0.96 38.52 29.54 68.60 2.03 40.55 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 N -0.46 -15.66 7.37 -54.81 -0.40 -16.06 16 21 H 0.45 13.48 8.96 -213.28 -1.91 11.57 16 22 C 0.46 14.66 6.56 71.24 0.47 15.13 16 23 O -0.49 -19.10 9.68 29.70 0.29 -18.81 16 24 O -0.35 -9.03 9.79 -51.37 -0.50 -9.53 16 25 C 0.10 2.20 1.13 -10.79 -0.01 2.18 16 26 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 27 C -0.13 -1.73 8.85 71.98 0.64 -1.09 16 28 C -0.18 -3.91 8.37 71.98 0.60 -3.31 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.77 8.11 -2.39 -0.02 1.75 16 31 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 32 H 0.17 6.98 5.77 -2.91 -0.02 6.96 16 33 H 0.22 5.43 8.06 -2.91 -0.02 5.41 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 36 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.50 5.89 -2.39 -0.01 1.48 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.50 5.89 -2.39 -0.01 1.48 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -65.10 375.09 3.54 -61.56 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.91 Total: 32.58 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 7.00 Total: 24.25 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.59 Total: -104.28 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: 0.00 Total: -54.66 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -65.10 3.54 -61.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413466959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.851 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds