Wall clock time and date at job start Tue Mar 31 2020 13:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46697 * 2 1 4 4 H 1.08995 * 109.47785 * 304.99990 * 3 2 1 5 5 O 1.42905 * 109.47235 * 65.00584 * 3 2 1 6 6 C 1.53006 * 109.46792 * 185.00120 * 3 2 1 7 7 N 1.46509 * 109.46995 * 180.02562 * 6 3 2 8 8 C 1.34769 * 120.00005 * 179.97438 * 7 6 3 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 7 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47360 * 299.99933 * 1 2 3 30 30 H 1.09003 * 109.47436 * 59.99601 * 1 2 3 31 31 H 1.09000 * 109.46886 * 240.00668 * 2 1 3 32 32 H 1.08990 * 109.47242 * 120.00312 * 2 1 3 33 33 H 0.96693 * 114.00088 * 59.99416 * 5 3 2 34 34 H 1.09000 * 109.47126 * 60.00286 * 6 3 2 35 35 H 1.09002 * 109.47092 * 299.99810 * 6 3 2 36 36 H 0.96999 * 119.99506 * 0.02562 * 7 6 3 37 37 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 38 38 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1258 7 7 4.0531 2.8257 -0.1251 8 6 5.3740 3.0735 -0.2263 9 8 6.1604 2.1507 -0.3185 10 7 5.8233 4.3441 -0.2262 11 6 7.1912 4.6008 -0.3315 12 7 8.0419 3.5928 -0.4305 13 6 9.3428 3.7909 -0.5314 14 6 9.8683 5.0676 -0.5380 15 6 9.0126 6.1561 -0.4420 16 6 7.6498 5.9180 -0.3319 17 8 6.7742 6.9535 -0.2309 18 6 7.3252 8.2720 -0.2383 19 6 6.1959 9.2973 -0.1175 20 6 6.7770 10.6877 -0.1248 21 1 7.8450 10.8262 -0.2068 22 6 5.9455 11.7830 -0.0255 23 7 4.6450 11.6143 0.0749 24 14 6.6656 13.5065 -0.0352 25 1 8.1434 13.4248 -0.1577 26 1 6.1144 14.2669 -1.1855 27 1 6.3117 14.1979 1.2305 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.0141 1.6542 2.0139 34 1 3.8531 0.9571 -1.0572 35 1 3.9994 0.9054 0.7161 36 1 3.4258 3.5618 -0.0512 37 1 5.1959 5.0803 -0.1530 38 1 10.0059 2.9420 -0.6100 39 1 10.9346 5.2180 -0.6215 40 1 9.3984 7.1648 -0.4494 41 1 7.8652 8.4349 -1.1710 42 1 8.0099 8.3844 0.6024 43 1 5.5116 9.1847 -0.9583 44 1 5.6556 9.1345 0.8150 45 1 4.0599 12.3848 0.1443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421097041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:11 Heat of formation + Delta-G solvation = -85.016362 kcal Electronic energy + Delta-G solvation = -26517.563782 eV Core-core repulsion = 22535.649602 eV Total energy + Delta-G solvation = -3981.914180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88914 -39.65491 -38.33485 -37.72004 -34.85069 -34.29592 -33.46416 -33.18939 -31.57511 -30.60649 -29.37669 -28.27662 -25.41134 -24.32197 -23.18751 -22.65394 -21.92754 -21.12866 -20.48012 -18.68827 -18.17055 -17.51582 -16.76870 -16.49239 -16.17156 -15.98089 -15.79118 -15.27897 -15.19657 -14.82968 -14.60509 -14.46394 -14.03911 -13.92215 -13.80742 -13.51890 -12.81787 -12.68397 -12.50361 -12.40486 -12.35500 -11.99311 -11.90128 -11.39502 -11.20938 -11.04093 -11.00753 -10.68808 -10.66802 -10.47093 -10.31336 -10.03622 -9.77165 -9.39267 -9.26464 -9.08031 -9.04477 -8.52046 -7.60307 -6.17531 -4.22339 1.29958 1.49215 2.44359 3.22093 3.23586 3.29319 3.32374 3.55961 3.81990 4.07792 4.10782 4.26946 4.34415 4.52633 4.61684 4.71262 4.95575 4.98856 5.05413 5.11766 5.19419 5.27993 5.30429 5.41444 5.48028 5.50600 5.55563 5.78630 5.87432 5.87761 5.91843 6.08310 6.21188 6.32120 6.40187 6.55990 6.60647 6.86462 7.24622 7.36990 7.53670 7.64876 7.75617 7.89064 8.15102 8.28231 8.64827 8.83194 9.42636 10.93971 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.002631 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.941824 B =10639.747269 C =13159.076268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.094 3.906 4 H 0.106 0.894 5 O -0.556 6.556 6 C 0.109 3.891 7 N -0.742 5.742 8 C 0.696 3.304 9 O -0.539 6.539 10 N -0.661 5.661 11 C 0.347 3.653 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.163 4.163 15 C -0.147 4.147 16 C 0.065 3.935 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.026 3.974 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.377 0.623 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.421 0.579 38 H 0.156 0.844 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -21.059 -0.171 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.034 3.966 4 H 0.124 0.876 5 O -0.362 6.362 6 C -0.016 4.016 7 N -0.399 5.399 8 C 0.396 3.604 9 O -0.411 6.411 10 N -0.310 5.310 11 C 0.113 3.887 12 N -0.157 5.157 13 C -0.081 4.081 14 C -0.185 4.185 15 C -0.173 4.173 16 C 0.013 3.987 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.224 0.776 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.156 -22.309 -0.628 22.421 hybrid contribution 0.611 2.319 0.370 2.426 sum -1.545 -19.990 -0.257 20.051 Atomic orbital electron populations 1.21697 0.94690 1.01627 1.02611 1.22146 0.97423 0.96272 1.03272 1.22259 0.92025 0.93850 0.88442 0.87581 1.86611 1.76780 1.57210 1.15575 1.21914 0.94015 0.82601 1.03091 1.44988 1.05792 1.09017 1.80152 1.15943 0.82657 0.83111 0.78719 1.91022 1.54078 1.42261 1.53707 1.42482 1.05402 1.08141 1.75003 1.17489 0.84621 0.86284 1.00297 1.67633 1.03396 1.31268 1.13406 1.22407 0.90305 0.96378 0.98980 1.21878 1.00781 0.92937 1.02877 1.21587 0.91555 1.01036 1.03148 1.19542 0.90302 0.87915 1.00946 1.86102 1.34492 1.15070 1.87232 1.23386 1.00007 0.77533 0.99846 1.19130 0.92563 0.90605 0.98800 1.20988 0.93571 0.90094 1.51890 0.92278 1.24987 0.94812 0.99537 0.94831 1.69975 1.02716 1.30729 1.49259 0.86431 0.79288 0.83895 0.77771 1.19625 1.20806 1.20808 0.92695 0.91926 0.92605 0.90636 0.91242 0.77561 0.90691 0.91321 0.76335 0.74185 0.82690 0.84840 0.83754 0.92964 0.92954 0.95361 0.95353 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.81 37.16 0.36 -0.48 16 2 C -0.15 -0.82 5.61 -26.73 -0.15 -0.97 16 3 C 0.09 0.63 3.05 -26.73 -0.08 0.55 16 4 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 5 O -0.56 -4.26 12.62 -35.23 -0.44 -4.71 16 6 C 0.11 0.95 5.34 -4.03 -0.02 0.93 16 7 N -0.74 -8.11 5.45 -65.22 -0.36 -8.47 16 8 C 0.70 10.52 8.53 -86.93 -0.74 9.78 16 9 O -0.54 -9.96 14.59 5.29 0.08 -9.89 16 10 N -0.66 -10.09 5.40 -15.67 -0.08 -10.17 16 11 C 0.35 5.94 7.45 -154.43 -1.15 4.79 16 12 N -0.44 -7.64 7.87 -12.22 -0.10 -7.74 16 13 C 0.08 1.06 11.17 -17.56 -0.20 0.86 16 14 C -0.16 -2.08 10.10 -39.44 -0.40 -2.48 16 15 C -0.15 -2.17 9.14 -39.18 -0.36 -2.53 16 16 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 17 O -0.32 -5.90 9.39 -19.69 -0.18 -6.08 16 18 C 0.07 1.32 4.70 37.16 0.17 1.49 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 21 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 24 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.40 7.82 -51.93 -0.41 -0.01 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.38 1.88 9.04 45.56 0.41 2.29 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 3.81 8.36 -40.82 -0.34 3.47 16 37 H 0.42 5.75 8.06 -40.82 -0.33 5.42 16 38 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.14 1.98 6.44 -52.49 -0.34 1.64 16 41 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 42 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -33.89 381.56 -9.00 -42.89 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.99 Total: 7.20 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.38 Total: 0.41 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.20 Total: -51.29 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.55 Total: -20.67 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.89 -9.00 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421097041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.127 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds