Wall clock time and date at job start Tue Mar 31 2020 13:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.08997 * 109.47008 * 305.22279 * 3 2 1 5 5 C 1.50704 * 109.46504 * 185.22635 * 3 2 1 6 6 H 1.08000 * 119.99732 * 245.65752 * 5 3 2 7 7 C 1.37874 * 120.00044 * 65.65790 * 5 3 2 8 8 N 1.31517 * 119.99962 * 193.28676 * 7 5 3 9 9 Si 1.86794 * 120.00214 * 13.29426 * 7 5 3 10 10 H 1.48494 * 109.47544 * 85.28392 * 9 7 5 11 11 H 1.48502 * 109.47238 * 205.28931 * 9 7 5 12 12 H 1.48503 * 109.46909 * 325.28316 * 9 7 5 13 13 N 1.46897 * 109.47152 * 65.22942 * 3 2 1 14 14 C 1.46904 * 110.99967 * 264.02371 * 13 3 2 15 15 H 1.09011 * 109.46650 * 37.27315 * 14 13 3 16 16 C 1.52999 * 109.47401 * 277.27953 * 14 13 3 17 17 C 1.50689 * 109.47400 * 157.27304 * 14 13 3 18 18 N 1.30114 * 124.94937 * 39.27793 * 17 14 13 19 19 C 1.35789 * 109.64491 * 180.02562 * 18 17 14 20 20 C 1.39742 * 133.60039 * 180.02562 * 19 18 17 21 21 C 1.36607 * 119.88091 * 180.02562 * 20 19 18 22 22 C 1.38773 * 120.67345 * 359.97438 * 21 20 19 23 23 C 1.37854 * 120.45063 * 0.02562 * 22 21 20 24 24 C 1.38840 * 119.68731 * 359.97438 * 23 22 21 25 25 N 1.36037 * 124.95495 * 219.32835 * 17 14 13 26 26 C 1.46498 * 126.34756 * 359.97438 * 25 17 14 27 27 F 1.39906 * 109.46827 * 305.58326 * 26 25 17 28 28 F 1.39896 * 109.47821 * 65.57850 * 26 25 17 29 29 H 1.09000 * 109.47066 * 299.22282 * 1 2 3 30 30 H 1.09001 * 109.47068 * 59.22239 * 1 2 3 31 31 H 1.09002 * 109.47612 * 179.22156 * 1 2 3 32 32 H 1.09000 * 109.46732 * 240.00214 * 2 1 3 33 33 H 1.08998 * 109.46404 * 119.99945 * 2 1 3 34 34 H 0.96993 * 120.00000 * 180.02562 * 8 7 5 35 35 H 1.00893 * 111.00267 * 27.98219 * 13 3 2 36 36 H 1.09007 * 109.47109 * 59.99442 * 16 14 13 37 37 H 1.08994 * 109.47207 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.46928 * 299.99931 * 16 14 13 39 39 H 1.07994 * 120.05778 * 0.02562 * 20 19 18 40 40 H 1.07998 * 119.65683 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.77386 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.15486 * 180.27626 * 23 22 21 43 43 H 1.09003 * 109.47491 * 185.58412 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 3.5414 1.4444 -0.1294 6 1 4.1531 1.8045 0.6845 7 6 4.1342 0.9863 -1.2869 8 7 5.4259 0.7404 -1.3114 9 14 3.1026 0.7152 -2.8204 10 1 2.9785 1.9934 -3.5660 11 1 3.7571 -0.3001 -3.6842 12 1 1.7521 0.2366 -2.4302 13 7 1.6561 2.0976 1.2575 14 6 0.4144 2.8654 1.0935 15 1 -0.2605 2.3268 0.4281 16 6 0.7373 4.2350 0.4928 17 6 -0.2442 3.0484 2.4364 18 7 0.3858 3.2911 3.5487 19 6 -0.5078 3.3985 4.5654 20 6 -0.3840 3.6471 5.9350 21 6 -1.5000 3.6964 6.7213 22 6 -2.7605 3.5024 6.1744 23 6 -2.9066 3.2558 4.8259 24 6 -1.7838 3.2021 4.0111 25 7 -1.5840 2.9831 2.6628 26 6 -2.6223 2.7274 1.6614 27 9 -2.4969 3.6469 0.6145 28 9 -2.4783 1.4289 1.1612 29 1 -0.3633 0.5017 0.8969 30 1 -0.3633 0.5259 -0.8829 31 1 -0.3634 -1.0276 -0.0140 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 5.8430 0.4186 -2.1258 35 1 1.5690 1.4244 2.0040 36 1 1.2137 4.1025 -0.4787 37 1 -0.1840 4.8045 0.3707 38 1 1.4123 4.7735 1.1580 39 1 0.5921 3.7999 6.3709 40 1 -1.4002 3.8891 7.7793 41 1 -3.6330 3.5448 6.8094 42 1 -3.8903 3.1099 4.4045 43 1 -3.6048 2.8325 2.1217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565843032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:51 Heat of formation + Delta-G solvation = -9.309657 kcal Electronic energy + Delta-G solvation = -28583.257437 eV Core-core repulsion = 24493.538631 eV Total energy + Delta-G solvation = -4089.718806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.58677 -47.65853 -42.31373 -38.00667 -36.90635 -34.07934 -33.24866 -31.80337 -30.55241 -29.52403 -28.64595 -26.90341 -26.38551 -24.06057 -22.55981 -22.49226 -21.57333 -20.11257 -19.83859 -18.62306 -18.10355 -17.99311 -16.95769 -16.80434 -15.65655 -15.41590 -15.28302 -15.21619 -14.64251 -14.46151 -14.20937 -13.98460 -13.90198 -13.72104 -13.55816 -13.21009 -12.72803 -12.66654 -12.36627 -12.25757 -11.98413 -11.81576 -11.63105 -11.54588 -11.44151 -11.00293 -10.92773 -10.85069 -10.74429 -10.38518 -9.97294 -9.91545 -9.41788 -9.25543 -8.65794 -8.38447 -8.29011 -7.42814 -6.01625 -3.94789 0.73146 1.22865 1.73858 2.57489 3.13763 3.29861 3.37776 3.40612 3.69735 3.71509 3.99322 4.05865 4.30883 4.45794 4.64482 4.75404 4.88674 5.14072 5.17573 5.23411 5.25973 5.43159 5.52879 5.61717 5.76780 5.82644 5.83977 6.00400 6.05162 6.15838 6.25290 6.28510 6.30776 6.48078 6.52749 6.58592 6.64550 6.74899 6.77545 6.85239 7.18456 7.71397 7.79397 7.92332 8.27444 8.73105 9.16179 9.63335 11.11842 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004113 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.129496 B = 6805.222463 C = 7541.965629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.158 4.158 3 C 0.193 3.807 4 H 0.028 0.972 5 C -0.495 4.495 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.855 3.145 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.253 1.253 13 N -0.646 5.646 14 C 0.154 3.846 15 H 0.059 0.941 16 C -0.133 4.133 17 C 0.311 3.689 18 N -0.452 5.452 19 C 0.057 3.943 20 C -0.059 4.059 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.114 4.114 24 C 0.048 3.952 25 N -0.545 5.545 26 C 0.481 3.519 27 F -0.177 7.177 28 F -0.177 7.177 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.262 0.738 35 H 0.336 0.664 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.890 5.101 11.239 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.197 4.197 3 C 0.085 3.915 4 H 0.045 0.955 5 C -0.534 4.534 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.682 3.318 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.178 1.178 13 N -0.277 5.277 14 C 0.042 3.958 15 H 0.077 0.923 16 C -0.192 4.192 17 C 0.046 3.954 18 N -0.169 5.169 19 C -0.060 4.060 20 C -0.078 4.078 21 C -0.148 4.148 22 C -0.121 4.121 23 C -0.135 4.135 24 C -0.057 4.057 25 N -0.248 5.248 26 C 0.345 3.655 27 F -0.158 7.158 28 F -0.159 7.159 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.529 5.637 11.021 23.972 hybrid contribution -2.010 -1.119 -1.333 2.659 sum -22.539 4.518 9.688 24.945 Atomic orbital electron populations 1.22014 0.98515 1.00356 1.00367 1.22752 0.92730 1.01855 1.02401 1.19652 0.97116 0.87969 0.86810 0.95453 1.20918 0.88654 1.41303 1.02477 0.89891 1.24877 0.94689 0.94912 0.98442 1.69942 1.10462 1.45151 1.27806 0.87395 0.81904 0.78236 0.84217 1.20482 1.21553 1.17752 1.60757 1.26989 1.31147 1.08856 1.20385 0.92013 0.98165 0.85271 0.92330 1.21798 1.00939 0.94171 1.02300 1.24305 0.78199 0.95230 0.97710 1.70649 1.30215 1.19466 0.96560 1.19283 0.88203 1.03930 0.94597 1.20121 0.99792 0.98321 0.89569 1.20678 0.91906 1.02127 1.00046 1.20857 0.97821 0.99827 0.93588 1.19912 0.95187 1.05107 0.93262 1.18779 0.98068 1.06418 0.82455 1.46588 1.08047 1.62972 1.07185 1.21127 0.92844 0.73102 0.78441 1.93141 1.96647 1.66469 1.59551 1.93156 1.96447 1.38060 1.88219 0.93783 0.93631 0.93892 0.91438 0.92369 0.92783 0.84501 0.90624 0.93414 0.90903 0.84846 0.85172 0.85151 0.86145 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.54 37.16 0.32 -2.47 16 2 C -0.16 -3.38 4.61 -26.73 -0.12 -3.51 16 3 C 0.19 4.48 1.58 -68.87 -0.11 4.37 16 4 H 0.03 0.65 5.73 -51.93 -0.30 0.35 16 5 C -0.50 -13.88 9.28 -34.44 -0.32 -14.20 16 6 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 7 C 0.07 2.07 5.36 -17.82 -0.10 1.97 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.86 20.91 25.85 -169.99 -4.39 16.51 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.25 -5.75 5.35 56.52 0.30 -5.45 16 13 N -0.65 -13.59 5.81 -102.17 -0.59 -14.18 16 14 C 0.15 2.75 1.57 -68.87 -0.11 2.64 16 15 H 0.06 1.04 4.36 -51.92 -0.23 0.81 16 16 C -0.13 -2.30 9.35 37.16 0.35 -1.95 16 17 C 0.31 5.19 6.36 -154.83 -0.98 4.21 16 18 N -0.45 -8.06 11.15 -8.24 -0.09 -8.15 16 19 C 0.06 0.85 7.23 -84.70 -0.61 0.24 16 20 C -0.06 -0.70 10.05 -39.61 -0.40 -1.10 16 21 C -0.13 -1.14 9.96 -39.97 -0.40 -1.54 16 22 C -0.10 -0.83 10.03 -39.52 -0.40 -1.22 16 23 C -0.11 -1.06 9.89 -39.50 -0.39 -1.45 16 24 C 0.05 0.62 6.87 -83.99 -0.58 0.04 16 25 N -0.55 -7.39 3.07 -116.88 -0.36 -7.75 16 26 C 0.48 5.06 5.61 59.85 0.34 5.39 16 27 F -0.18 -2.06 16.58 2.25 0.04 -2.03 16 28 F -0.18 -2.17 15.50 2.25 0.03 -2.13 16 29 H 0.04 0.76 4.87 -51.93 -0.25 0.50 16 30 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.53 4.75 -51.93 -0.25 1.29 16 33 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.34 7.08 7.87 -39.30 -0.31 6.77 16 36 H 0.07 1.37 7.44 -51.92 -0.39 0.98 16 37 H 0.05 0.71 7.84 -51.93 -0.41 0.30 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.75 7.78 -52.49 -0.41 0.34 16 43 H 0.15 0.85 7.65 -51.93 -0.40 0.46 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -32.61 348.92 -8.38 -40.99 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.53 Total: 6.68 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -3.51 Total: -8.59 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.27 Total: -56.69 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.07 Total: -4.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.39 Total: 16.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.61 -8.38 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565843032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.680 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds