Wall clock time and date at job start Tue Mar 31 2020 13:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.08997 * 109.47008 * 305.22279 * 3 2 1 5 5 C 1.50704 * 109.46504 * 185.22635 * 3 2 1 6 6 H 1.08000 * 119.99732 * 245.65752 * 5 3 2 7 7 C 1.37874 * 120.00044 * 65.65790 * 5 3 2 8 8 N 1.31517 * 119.99962 * 193.28676 * 7 5 3 9 9 Si 1.86794 * 120.00214 * 13.29426 * 7 5 3 10 10 H 1.48494 * 109.47544 * 85.28392 * 9 7 5 11 11 H 1.48502 * 109.47238 * 205.28931 * 9 7 5 12 12 H 1.48503 * 109.46909 * 325.28316 * 9 7 5 13 13 N 1.46897 * 109.47152 * 65.22942 * 3 2 1 14 14 C 1.46904 * 110.99967 * 264.02371 * 13 3 2 15 15 H 1.09011 * 109.46650 * 37.27315 * 14 13 3 16 16 C 1.52999 * 109.47401 * 277.27953 * 14 13 3 17 17 C 1.50689 * 109.47400 * 157.27304 * 14 13 3 18 18 N 1.30114 * 124.94937 * 39.27793 * 17 14 13 19 19 C 1.35789 * 109.64491 * 180.02562 * 18 17 14 20 20 C 1.39742 * 133.60039 * 180.02562 * 19 18 17 21 21 C 1.36607 * 119.88091 * 180.02562 * 20 19 18 22 22 C 1.38773 * 120.67345 * 359.97438 * 21 20 19 23 23 C 1.37854 * 120.45063 * 0.02562 * 22 21 20 24 24 C 1.38840 * 119.68731 * 359.97438 * 23 22 21 25 25 N 1.36037 * 124.95495 * 219.32835 * 17 14 13 26 26 C 1.46498 * 126.34756 * 359.97438 * 25 17 14 27 27 F 1.39906 * 109.46827 * 305.58326 * 26 25 17 28 28 F 1.39896 * 109.47821 * 65.57850 * 26 25 17 29 29 H 1.09000 * 109.47066 * 299.22282 * 1 2 3 30 30 H 1.09001 * 109.47068 * 59.22239 * 1 2 3 31 31 H 1.09002 * 109.47612 * 179.22156 * 1 2 3 32 32 H 1.09000 * 109.46732 * 240.00214 * 2 1 3 33 33 H 1.08998 * 109.46404 * 119.99945 * 2 1 3 34 34 H 0.96993 * 120.00000 * 180.02562 * 8 7 5 35 35 H 1.00893 * 111.00267 * 27.98219 * 13 3 2 36 36 H 1.09007 * 109.47109 * 59.99442 * 16 14 13 37 37 H 1.08994 * 109.47207 * 179.97438 * 16 14 13 38 38 H 1.08998 * 109.46928 * 299.99931 * 16 14 13 39 39 H 1.07994 * 120.05778 * 0.02562 * 20 19 18 40 40 H 1.07998 * 119.65683 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.77386 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.15486 * 180.27626 * 23 22 21 43 43 H 1.09003 * 109.47491 * 185.58412 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9826 -0.8395 5 6 3.5414 1.4444 -0.1294 6 1 4.1531 1.8045 0.6845 7 6 4.1342 0.9863 -1.2869 8 7 5.4259 0.7404 -1.3114 9 14 3.1026 0.7152 -2.8204 10 1 2.9785 1.9934 -3.5660 11 1 3.7571 -0.3001 -3.6842 12 1 1.7521 0.2366 -2.4302 13 7 1.6561 2.0976 1.2575 14 6 0.4144 2.8654 1.0935 15 1 -0.2605 2.3268 0.4281 16 6 0.7373 4.2350 0.4928 17 6 -0.2442 3.0484 2.4364 18 7 0.3858 3.2911 3.5487 19 6 -0.5078 3.3985 4.5654 20 6 -0.3840 3.6471 5.9350 21 6 -1.5000 3.6964 6.7213 22 6 -2.7605 3.5024 6.1744 23 6 -2.9066 3.2558 4.8259 24 6 -1.7838 3.2021 4.0111 25 7 -1.5840 2.9831 2.6628 26 6 -2.6223 2.7274 1.6614 27 9 -2.4969 3.6469 0.6145 28 9 -2.4783 1.4289 1.1612 29 1 -0.3633 0.5017 0.8969 30 1 -0.3633 0.5259 -0.8829 31 1 -0.3634 -1.0276 -0.0140 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 5.8430 0.4186 -2.1258 35 1 1.5690 1.4244 2.0040 36 1 1.2137 4.1025 -0.4787 37 1 -0.1840 4.8045 0.3707 38 1 1.4123 4.7735 1.1580 39 1 0.5921 3.7999 6.3709 40 1 -1.4002 3.8891 7.7793 41 1 -3.6330 3.5448 6.8094 42 1 -3.8903 3.1099 4.4045 43 1 -3.6048 2.8325 2.1217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565843032.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:51 Heat of formation + Delta-G solvation = -31.432512 kcal Electronic energy + Delta-G solvation = -28584.216756 eV Core-core repulsion = 24493.538631 eV Total energy + Delta-G solvation = -4090.678125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.40459 -48.48663 -43.28811 -39.27823 -38.10960 -35.19498 -34.84734 -33.72897 -31.36363 -30.91443 -29.78173 -28.77085 -27.22066 -25.37272 -24.19597 -23.39469 -22.54802 -21.69927 -21.19870 -19.47940 -19.09754 -18.90598 -18.65563 -17.81032 -17.00183 -16.90039 -16.46395 -16.08171 -16.00987 -15.57222 -15.33704 -15.06959 -14.90801 -14.88612 -14.80606 -14.53321 -14.45213 -13.78874 -13.66608 -13.53086 -13.30785 -13.03962 -12.94289 -12.69068 -12.65153 -12.54137 -12.43734 -12.29338 -12.20932 -11.88584 -11.75872 -11.32892 -11.25914 -10.99896 -10.56240 -9.48609 -9.21541 -9.10744 -8.24898 -6.23507 -0.15059 0.43349 0.87612 1.35104 1.37859 1.46136 1.58067 2.37219 2.40367 2.85324 2.91217 2.98050 3.07361 3.10429 3.44021 3.51581 3.90971 3.97159 4.10842 4.18311 4.22663 4.29009 4.36556 4.39588 4.41095 4.45829 4.65539 4.74152 4.76736 4.84865 4.99318 5.04118 5.08762 5.14275 5.21626 5.35611 5.44693 5.49776 5.54763 5.68610 5.69935 5.90966 6.01043 6.53173 6.67019 6.79205 6.82252 7.39087 8.92732 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004113 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.129496 B = 6805.222463 C = 7541.965629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 C 0.202 3.798 4 H 0.031 0.969 5 C -0.503 4.503 6 H 0.029 0.971 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.222 1.222 13 N -0.661 5.661 14 C 0.161 3.839 15 H 0.067 0.933 16 C -0.129 4.129 17 C 0.287 3.713 18 N -0.494 5.494 19 C 0.010 3.990 20 C -0.084 4.084 21 C -0.116 4.116 22 C -0.087 4.087 23 C -0.112 4.112 24 C 0.045 3.955 25 N -0.542 5.542 26 C 0.472 3.528 27 F -0.186 7.186 28 F -0.189 7.189 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.333 0.667 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.127 0.873 40 H 0.161 0.839 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.209 5.014 11.962 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.194 4.194 3 C 0.093 3.907 4 H 0.049 0.951 5 C -0.542 4.542 6 H 0.048 0.952 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.747 3.253 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.145 1.145 13 N -0.293 5.293 14 C 0.049 3.951 15 H 0.085 0.915 16 C -0.187 4.187 17 C 0.021 3.979 18 N -0.212 5.212 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.136 4.136 22 C -0.106 4.106 23 C -0.133 4.133 24 C -0.060 4.060 25 N -0.244 5.244 26 C 0.338 3.662 27 F -0.167 7.167 28 F -0.170 7.170 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.179 0.821 41 H 0.191 0.809 42 H 0.179 0.821 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -25.888 5.559 11.760 28.972 hybrid contribution -0.341 -1.007 -1.282 1.666 sum -26.230 4.552 10.478 28.609 Atomic orbital electron populations 1.21895 0.95212 1.02033 1.01015 1.22590 0.95594 0.99779 1.01452 1.19391 0.93809 0.89596 0.87903 0.95124 1.21161 0.91278 1.40632 1.01092 0.95229 1.25747 0.95865 0.94599 1.01988 1.70107 1.12821 1.46977 1.28881 0.86285 0.81463 0.78334 0.79208 1.19911 1.21478 1.14453 1.60525 1.29943 1.31028 1.07759 1.20208 0.90678 0.97433 0.86772 0.91534 1.21743 1.01602 0.94378 1.01003 1.23723 0.79923 0.97580 0.96678 1.70479 1.32624 1.20077 0.98002 1.19708 0.89080 1.06531 0.95324 1.20345 1.01020 0.99891 0.89083 1.21111 0.91407 0.99892 1.01222 1.21444 0.98674 0.96824 0.93639 1.20464 0.95689 1.03790 0.93335 1.19144 0.98367 1.06351 0.82168 1.46636 1.07276 1.62422 1.08113 1.22032 0.94005 0.72231 0.77945 1.93120 1.96712 1.66777 1.60115 1.93125 1.96534 1.38960 1.88399 0.93254 0.92859 0.91688 0.92485 0.93297 0.92703 0.84885 0.91854 0.90919 0.92770 0.85502 0.82106 0.80861 0.82064 0.77244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.54 71.98 0.61 -4.24 16 2 C -0.15 -6.56 4.61 30.59 0.14 -6.42 16 3 C 0.20 9.57 1.58 44.17 0.07 9.64 16 4 H 0.03 1.44 5.73 -2.39 -0.01 1.43 16 5 C -0.50 -29.74 9.28 25.60 0.24 -29.50 16 6 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 7 C 0.02 0.89 5.36 84.65 0.45 1.34 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.92 43.63 25.85 68.60 1.77 45.40 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.22 -9.29 5.35 99.48 0.53 -8.75 16 13 N -0.66 -29.04 5.81 -477.16 -2.77 -31.81 16 14 C 0.16 5.82 1.57 44.16 0.07 5.89 16 15 H 0.07 2.29 4.36 -2.38 -0.01 2.28 16 16 C -0.13 -4.54 9.35 71.98 0.67 -3.87 16 17 C 0.29 9.66 6.36 137.92 0.88 10.53 16 18 N -0.49 -18.36 11.15 -179.97 -2.01 -20.37 16 19 C 0.01 0.29 7.23 39.45 0.29 0.57 16 20 C -0.08 -1.97 10.05 22.25 0.22 -1.75 16 21 C -0.12 -1.71 9.96 22.02 0.22 -1.49 16 22 C -0.09 -0.96 10.03 22.31 0.22 -0.74 16 23 C -0.11 -1.56 9.89 22.32 0.22 -1.34 16 24 C 0.04 1.05 6.87 38.86 0.27 1.32 16 25 N -0.54 -13.71 3.07 -523.70 -1.61 -15.32 16 26 C 0.47 8.36 5.61 127.77 0.72 9.08 16 27 F -0.19 -3.85 16.58 44.97 0.75 -3.10 16 28 F -0.19 -4.04 15.50 44.97 0.70 -3.35 16 29 H 0.05 1.61 4.87 -2.39 -0.01 1.60 16 30 H 0.05 1.71 8.03 -2.39 -0.02 1.69 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.52 4.75 -2.39 -0.01 2.50 16 33 H 0.05 2.13 8.02 -2.39 -0.02 2.11 16 34 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.33 14.78 7.87 -89.70 -0.71 14.07 16 36 H 0.06 2.34 7.44 -2.38 -0.02 2.32 16 37 H 0.07 2.15 7.84 -2.39 -0.02 2.13 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.16 0.89 7.78 -2.91 -0.02 0.87 16 43 H 0.21 1.20 7.65 -2.39 -0.02 1.18 16 Total: -1.00 -78.16 348.92 2.60 -75.56 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.17 Total: 24.31 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.29 Total: -10.96 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -6.09 Total: -127.86 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 1.44 Total: -6.45 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.77 Total: 45.40 kcal Total: -78.16 2.60 -75.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565843032.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.128 kcal (2) G-P(sol) polarization free energy of solvation -78.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds