Wall clock time and date at job start Tue Mar 31 2020 13:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 H 1.09003 * 109.47332 * 55.01556 * 3 2 1 5 5 C 1.50698 * 109.47300 * 175.01536 * 3 2 1 6 6 H 1.08003 * 120.00371 * 119.99965 * 5 3 2 7 7 C 1.37887 * 119.99929 * 299.99717 * 5 3 2 8 8 N 1.31512 * 119.99719 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99993 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47340 * 60.00109 * 9 7 5 11 11 H 1.48501 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47291 * 300.00223 * 9 7 5 13 13 N 1.46898 * 109.47106 * 295.01351 * 3 2 1 14 14 C 1.46904 * 110.99968 * 156.15094 * 13 3 2 15 15 H 1.08997 * 109.47393 * 34.72290 * 14 13 3 16 16 C 1.52998 * 109.46945 * 274.71996 * 14 13 3 17 17 C 1.50698 * 109.46957 * 154.72403 * 14 13 3 18 18 N 1.30109 * 124.95321 * 44.69433 * 17 14 13 19 19 C 1.35787 * 109.64250 * 179.89272 * 18 17 14 20 20 C 1.39749 * 133.59880 * 180.12788 * 19 18 17 21 21 C 1.36607 * 119.88229 * 180.29909 * 20 19 18 22 22 C 1.38774 * 120.66923 * 359.95708 * 21 20 19 23 23 C 1.37845 * 120.45621 * 0.02667 * 22 21 20 24 24 C 1.38838 * 119.68866 * 359.97438 * 23 22 21 25 25 N 1.36043 * 124.94841 * 224.99974 * 17 14 13 26 26 C 1.46497 * 126.34853 * 359.94333 * 25 17 14 27 27 F 1.39905 * 109.47150 * 210.00249 * 26 25 17 28 28 F 1.39901 * 109.47138 * 329.99522 * 26 25 17 29 29 H 1.08994 * 109.47357 * 55.42060 * 1 2 3 30 30 H 1.09001 * 109.46894 * 295.42709 * 1 2 3 31 31 H 1.09004 * 109.47446 * 175.42642 * 1 2 3 32 32 H 1.08997 * 109.47198 * 120.00223 * 2 1 3 33 33 H 1.09000 * 109.47126 * 240.00319 * 2 1 3 34 34 H 0.97002 * 119.99714 * 179.97438 * 8 7 5 35 35 H 1.00899 * 111.00076 * 280.10397 * 13 3 2 36 36 H 1.09002 * 109.47359 * 65.06648 * 16 14 13 37 37 H 1.09000 * 109.46827 * 185.06178 * 16 14 13 38 38 H 1.08999 * 109.47347 * 305.05823 * 16 14 13 39 39 H 1.07993 * 120.05469 * 0.28161 * 20 19 18 40 40 H 1.08003 * 119.65987 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.77209 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.16042 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47456 * 89.99742 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9815 0.8420 5 6 3.5419 1.4443 0.1234 6 1 4.1471 1.8889 -0.6528 7 6 4.1436 0.8783 1.2275 8 7 3.4067 0.3364 2.1725 9 14 6.0052 0.8811 1.3809 10 1 6.4997 2.2814 1.3812 11 1 6.3984 0.2165 2.6493 12 1 6.5975 0.1473 0.2337 13 7 1.6511 2.0993 -1.2551 14 6 1.5989 3.5583 -1.0915 15 1 2.3772 3.8741 -0.3968 16 6 0.2295 3.9610 -0.5406 17 6 1.8180 4.2216 -2.4268 18 7 1.2548 3.8570 -3.5416 19 6 1.6692 4.6678 -4.5488 20 6 1.3862 4.7278 -5.9161 21 6 1.9806 5.6815 -6.6929 22 6 2.8651 6.5959 -6.1384 23 6 3.1589 6.5558 -4.7922 24 6 2.5644 5.5936 -3.9870 25 7 2.6380 5.2853 -2.6433 26 6 3.4482 5.9761 -1.6371 27 9 3.5948 7.3197 -1.9985 28 9 2.8149 5.8946 -0.3923 29 1 -0.3634 0.5832 -0.8461 30 1 -0.3633 0.4413 0.9281 31 1 -0.3634 -1.0244 -0.0819 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8300 -0.0621 2.9490 35 1 2.2738 1.8417 -2.0061 36 1 0.1080 3.5547 0.4635 37 1 0.1581 5.0480 -0.5038 38 1 -0.5532 3.5673 -1.1891 39 1 0.6991 4.0214 -6.3577 40 1 1.7597 5.7243 -7.7492 41 1 3.3265 7.3441 -6.7660 42 1 3.8482 7.2695 -4.3658 43 1 4.4301 5.5069 -1.5766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565843033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:54 Heat of formation + Delta-G solvation = -19.851268 kcal Electronic energy + Delta-G solvation = -28311.861554 eV Core-core repulsion = 24221.685629 eV Total energy + Delta-G solvation = -4090.175925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.47535 -47.58958 -42.13259 -37.72364 -36.43422 -33.84174 -33.31753 -31.50198 -30.44158 -29.34923 -28.52285 -26.14950 -26.05804 -24.03195 -22.66975 -22.19851 -21.45849 -19.99741 -19.47989 -18.36534 -18.19137 -17.66640 -16.75730 -16.70533 -15.58557 -15.25501 -15.08794 -14.90609 -14.62425 -14.31411 -14.10667 -13.96099 -13.68861 -13.58381 -13.28312 -12.78137 -12.63624 -12.35344 -12.17220 -12.11081 -11.57293 -11.51000 -11.41487 -11.35738 -11.14428 -10.99820 -10.75968 -10.69253 -10.62816 -10.22968 -9.86709 -9.61448 -9.57340 -9.12119 -8.46416 -8.43597 -8.13649 -7.37198 -6.06988 -4.21268 0.89862 1.39166 1.92837 2.74332 3.19990 3.27177 3.28412 3.38483 3.84249 3.94514 4.15538 4.23137 4.31707 4.36826 4.86492 4.91428 5.11060 5.19968 5.32946 5.33637 5.47235 5.62770 5.77827 5.85639 6.01087 6.18594 6.34167 6.39417 6.41719 6.43183 6.45848 6.55343 6.68835 6.73604 6.77258 6.91886 7.08033 7.21702 7.38355 7.53401 7.70934 7.93124 8.02635 8.05132 8.24471 8.54994 8.90136 9.46618 10.92675 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004403 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.208871 B = 6358.488927 C = 7148.539267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.552 4.552 6 H 0.049 0.951 7 C 0.072 3.928 8 N -0.880 5.880 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.666 5.666 14 C 0.159 3.841 15 H 0.076 0.924 16 C -0.127 4.127 17 C 0.317 3.683 18 N -0.460 5.460 19 C 0.055 3.945 20 C -0.065 4.065 21 C -0.127 4.127 22 C -0.108 4.108 23 C -0.106 4.106 24 C 0.047 3.953 25 N -0.548 5.548 26 C 0.489 3.511 27 F -0.184 7.184 28 F -0.169 7.169 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.334 0.666 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 12.289 -11.231 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.591 4.591 6 H 0.067 0.933 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.298 5.298 14 C 0.047 3.953 15 H 0.093 0.907 16 C -0.186 4.186 17 C 0.052 3.948 18 N -0.178 5.178 19 C -0.062 4.062 20 C -0.084 4.084 21 C -0.148 4.148 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.059 4.059 25 N -0.251 5.251 26 C 0.353 3.647 27 F -0.165 7.165 28 F -0.150 7.150 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.960 11.534 -10.931 16.011 hybrid contribution 2.679 1.033 0.432 2.904 sum 0.719 12.566 -10.499 16.391 Atomic orbital electron populations 1.21725 0.98819 0.98621 1.00542 1.21461 0.92304 0.98761 1.01713 1.19259 0.92704 0.91553 0.85794 0.94447 1.21783 0.92683 1.39043 1.05553 0.93280 1.24898 0.97786 0.94841 0.95640 1.69857 1.34923 1.37640 1.09344 0.86758 0.86142 0.78131 0.77537 1.20499 1.21077 1.20282 1.61022 1.56958 1.01861 1.09933 1.20261 0.99187 0.90627 0.85236 0.90688 1.21722 0.95758 0.99205 1.01916 1.24396 0.87126 0.85418 0.97892 1.70598 1.24646 1.25735 0.96789 1.19252 0.97799 0.94476 0.94660 1.20043 0.99820 0.98824 0.89710 1.20645 0.98340 0.95892 0.99884 1.20851 0.98774 0.99484 0.93660 1.20069 1.01568 0.97812 0.93190 1.18785 1.03109 1.01100 0.82912 1.46768 1.41399 1.29628 1.07264 1.21519 0.92587 0.76845 0.73708 1.93076 1.95968 1.35962 1.91539 1.93142 1.84634 1.95643 1.41592 0.92791 0.94548 0.95665 0.89098 0.95054 0.92683 0.84819 0.91138 0.93755 0.91409 0.85139 0.85392 0.85340 0.85800 0.83061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.85 37.15 0.37 -2.47 16 2 C -0.10 -2.42 5.45 -26.74 -0.15 -2.57 16 3 C 0.21 5.04 1.79 -68.87 -0.12 4.92 16 4 H 0.04 0.96 7.18 -51.93 -0.37 0.59 16 5 C -0.55 -14.06 8.21 -34.44 -0.28 -14.35 16 6 H 0.05 1.24 7.76 -52.48 -0.41 0.84 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -23.83 11.29 55.43 0.63 -23.20 16 9 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.67 -13.74 5.39 -102.17 -0.55 -14.29 16 14 C 0.16 2.94 2.23 -68.86 -0.15 2.79 16 15 H 0.08 1.47 5.52 -51.93 -0.29 1.18 16 16 C -0.13 -2.18 9.36 37.16 0.35 -1.83 16 17 C 0.32 5.58 6.27 -154.82 -0.97 4.61 16 18 N -0.46 -8.43 11.24 -8.23 -0.09 -8.53 16 19 C 0.06 0.90 7.23 -84.70 -0.61 0.29 16 20 C -0.06 -0.84 10.05 -39.61 -0.40 -1.24 16 21 C -0.13 -1.33 9.96 -39.97 -0.40 -1.73 16 22 C -0.11 -1.11 10.03 -39.53 -0.40 -1.50 16 23 C -0.11 -1.28 9.61 -39.50 -0.38 -1.66 16 24 C 0.05 0.71 6.69 -83.99 -0.56 0.14 16 25 N -0.55 -8.50 3.19 -116.88 -0.37 -8.87 16 26 C 0.49 6.34 6.34 59.85 0.38 6.72 16 27 F -0.18 -2.25 15.78 2.25 0.04 -2.21 16 28 F -0.17 -2.47 14.73 2.25 0.03 -2.44 16 29 H 0.05 1.08 7.63 -51.93 -0.40 0.68 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.33 7.18 8.06 -39.29 -0.32 6.86 16 36 H 0.07 1.23 7.50 -51.93 -0.39 0.84 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 42 H 0.12 1.30 7.13 -52.49 -0.37 0.93 16 43 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -28.41 358.92 -9.15 -37.56 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.79 Total: 7.47 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.42 Total: -6.10 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.39 Total: -54.89 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.41 -9.15 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565843033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.705 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds