Wall clock time and date at job start Tue Mar 31 2020 13:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47267 * 2 1 4 4 H 1.09003 * 109.47332 * 55.01556 * 3 2 1 5 5 C 1.50698 * 109.47300 * 175.01536 * 3 2 1 6 6 H 1.08003 * 120.00371 * 119.99965 * 5 3 2 7 7 C 1.37887 * 119.99929 * 299.99717 * 5 3 2 8 8 N 1.31512 * 119.99719 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99993 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47340 * 60.00109 * 9 7 5 11 11 H 1.48501 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47291 * 300.00223 * 9 7 5 13 13 N 1.46898 * 109.47106 * 295.01351 * 3 2 1 14 14 C 1.46904 * 110.99968 * 156.15094 * 13 3 2 15 15 H 1.08997 * 109.47393 * 34.72290 * 14 13 3 16 16 C 1.52998 * 109.46945 * 274.71996 * 14 13 3 17 17 C 1.50698 * 109.46957 * 154.72403 * 14 13 3 18 18 N 1.30109 * 124.95321 * 44.69433 * 17 14 13 19 19 C 1.35787 * 109.64250 * 179.89272 * 18 17 14 20 20 C 1.39749 * 133.59880 * 180.12788 * 19 18 17 21 21 C 1.36607 * 119.88229 * 180.29909 * 20 19 18 22 22 C 1.38774 * 120.66923 * 359.95708 * 21 20 19 23 23 C 1.37845 * 120.45621 * 0.02667 * 22 21 20 24 24 C 1.38838 * 119.68866 * 359.97438 * 23 22 21 25 25 N 1.36043 * 124.94841 * 224.99974 * 17 14 13 26 26 C 1.46497 * 126.34853 * 359.94333 * 25 17 14 27 27 F 1.39905 * 109.47150 * 210.00249 * 26 25 17 28 28 F 1.39901 * 109.47138 * 329.99522 * 26 25 17 29 29 H 1.08994 * 109.47357 * 55.42060 * 1 2 3 30 30 H 1.09001 * 109.46894 * 295.42709 * 1 2 3 31 31 H 1.09004 * 109.47446 * 175.42642 * 1 2 3 32 32 H 1.08997 * 109.47198 * 120.00223 * 2 1 3 33 33 H 1.09000 * 109.47126 * 240.00319 * 2 1 3 34 34 H 0.97002 * 119.99714 * 179.97438 * 8 7 5 35 35 H 1.00899 * 111.00076 * 280.10397 * 13 3 2 36 36 H 1.09002 * 109.47359 * 65.06648 * 16 14 13 37 37 H 1.09000 * 109.46827 * 185.06178 * 16 14 13 38 38 H 1.08999 * 109.47347 * 305.05823 * 16 14 13 39 39 H 1.07993 * 120.05469 * 0.28161 * 20 19 18 40 40 H 1.08003 * 119.65987 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.77209 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.16042 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47456 * 89.99742 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9815 0.8420 5 6 3.5419 1.4443 0.1234 6 1 4.1471 1.8889 -0.6528 7 6 4.1436 0.8783 1.2275 8 7 3.4067 0.3364 2.1725 9 14 6.0052 0.8811 1.3809 10 1 6.4997 2.2814 1.3812 11 1 6.3984 0.2165 2.6493 12 1 6.5975 0.1473 0.2337 13 7 1.6511 2.0993 -1.2551 14 6 1.5989 3.5583 -1.0915 15 1 2.3772 3.8741 -0.3968 16 6 0.2295 3.9610 -0.5406 17 6 1.8180 4.2216 -2.4268 18 7 1.2548 3.8570 -3.5416 19 6 1.6692 4.6678 -4.5488 20 6 1.3862 4.7278 -5.9161 21 6 1.9806 5.6815 -6.6929 22 6 2.8651 6.5959 -6.1384 23 6 3.1589 6.5558 -4.7922 24 6 2.5644 5.5936 -3.9870 25 7 2.6380 5.2853 -2.6433 26 6 3.4482 5.9761 -1.6371 27 9 3.5948 7.3197 -1.9985 28 9 2.8149 5.8946 -0.3923 29 1 -0.3634 0.5832 -0.8461 30 1 -0.3633 0.4413 0.9281 31 1 -0.3634 -1.0244 -0.0819 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8300 -0.0621 2.9490 35 1 2.2738 1.8417 -2.0061 36 1 0.1080 3.5547 0.4635 37 1 0.1581 5.0480 -0.5038 38 1 -0.5532 3.5673 -1.1891 39 1 0.6991 4.0214 -6.3577 40 1 1.7597 5.7243 -7.7492 41 1 3.3265 7.3441 -6.7660 42 1 3.8482 7.2695 -4.3658 43 1 4.4301 5.5069 -1.5766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565843033.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:53 Heat of formation + Delta-G solvation = -35.363942 kcal Electronic energy + Delta-G solvation = -28312.534234 eV Core-core repulsion = 24221.685629 eV Total energy + Delta-G solvation = -4090.848605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.51662 -48.63459 -43.25327 -38.92167 -37.91438 -35.19872 -34.80878 -33.35866 -31.40182 -30.83448 -29.75305 -27.91564 -27.19733 -25.43877 -24.31321 -23.23339 -22.57706 -21.38914 -21.20490 -19.40043 -19.22318 -18.86408 -18.54868 -17.81420 -16.82503 -16.80306 -16.30690 -16.12515 -16.03846 -15.38433 -15.36410 -15.20156 -14.98412 -14.73941 -14.66470 -14.40180 -13.82727 -13.79134 -13.63799 -13.24925 -13.12066 -12.96092 -12.93180 -12.68139 -12.60965 -12.47600 -12.35891 -12.27930 -12.05429 -11.76033 -11.49201 -11.41942 -11.03533 -10.99506 -10.43505 -9.46454 -9.19518 -9.11656 -8.04528 -6.26745 -0.13127 0.43416 0.86137 1.38446 1.41295 1.47329 1.60005 2.38124 2.40472 2.85469 2.88095 2.97789 3.08745 3.16405 3.39193 3.62017 3.94252 4.06043 4.26137 4.33568 4.39628 4.44534 4.51169 4.64974 4.74446 4.77687 4.81894 4.94746 4.98955 5.06828 5.19278 5.24585 5.38109 5.47188 5.50029 5.52301 5.53605 5.63649 5.70017 5.79427 5.92203 6.09568 6.17444 6.34707 6.67144 6.80549 6.96297 7.44357 8.92046 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.013322 B = 0.004403 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.208871 B = 6358.488927 C = 7148.539267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C 0.224 3.776 4 H 0.013 0.987 5 C -0.561 4.561 6 H 0.047 0.953 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.660 5.660 14 C 0.164 3.836 15 H 0.063 0.937 16 C -0.118 4.118 17 C 0.296 3.704 18 N -0.485 5.485 19 C 0.016 3.984 20 C -0.079 4.079 21 C -0.115 4.115 22 C -0.091 4.091 23 C -0.117 4.117 24 C 0.034 3.966 25 N -0.549 5.549 26 C 0.485 3.515 27 F -0.178 7.178 28 F -0.182 7.182 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.329 0.671 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.140 0.860 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 14.000 -13.485 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.139 4.139 3 C 0.116 3.884 4 H 0.031 0.969 5 C -0.600 4.600 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.544 5.544 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.290 5.290 14 C 0.052 3.948 15 H 0.081 0.919 16 C -0.177 4.177 17 C 0.031 3.969 18 N -0.203 5.203 19 C -0.101 4.101 20 C -0.099 4.099 21 C -0.135 4.135 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.071 4.071 25 N -0.252 5.252 26 C 0.351 3.649 27 F -0.160 7.160 28 F -0.163 7.163 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.184 0.816 41 H 0.187 0.813 42 H 0.158 0.842 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.958 13.270 -13.194 18.737 hybrid contribution 2.355 0.599 0.964 2.614 sum 1.397 13.869 -12.230 18.544 Atomic orbital electron populations 1.21579 0.96474 0.99858 1.00526 1.21340 0.94381 0.98238 0.99967 1.19012 0.91690 0.91583 0.86129 0.96929 1.22050 0.93797 1.38698 1.05463 0.93512 1.25580 1.01718 0.94652 0.95444 1.69983 1.36400 1.38335 1.09722 0.85825 0.81402 0.78422 0.77259 1.19515 1.21023 1.20200 1.60924 1.56268 1.03496 1.08314 1.20106 0.99352 0.89196 0.86127 0.91916 1.21622 0.94984 0.99955 1.01114 1.23886 0.88906 0.86937 0.97195 1.70460 1.25317 1.26887 0.97673 1.19696 0.99426 0.95306 0.95640 1.20358 1.00626 1.00078 0.88833 1.21114 0.96758 0.94214 1.01383 1.21403 0.97224 0.99273 0.93126 1.20426 1.01889 0.97535 0.93899 1.19172 1.03475 1.01772 0.82714 1.46803 1.41151 1.29220 1.08023 1.21960 0.93106 0.77146 0.72730 1.93080 1.95875 1.35585 1.91417 1.93112 1.85015 1.95721 1.42469 0.92479 0.94739 0.93815 0.91724 0.95728 0.92814 0.85460 0.91968 0.92428 0.91805 0.84520 0.81646 0.81327 0.84194 0.80258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.85 71.98 0.71 -4.47 16 2 C -0.10 -4.81 5.45 30.59 0.17 -4.64 16 3 C 0.22 10.87 1.79 44.17 0.08 10.95 16 4 H 0.01 0.68 7.18 -2.39 -0.02 0.66 16 5 C -0.56 -29.19 8.21 25.60 0.21 -28.98 16 6 H 0.05 2.40 7.76 -2.91 -0.02 2.38 16 7 C 0.03 1.42 5.29 84.66 0.45 1.87 16 8 N -0.91 -50.09 11.29 21.45 0.24 -49.85 16 9 Si 0.94 41.67 29.54 68.60 2.03 43.70 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.66 -28.05 5.39 -477.17 -2.57 -30.62 16 14 C 0.16 6.27 2.23 44.17 0.10 6.36 16 15 H 0.06 2.55 5.52 -2.39 -0.01 2.53 16 16 C -0.12 -4.16 9.36 71.98 0.67 -3.48 16 17 C 0.30 10.65 6.27 137.92 0.86 11.51 16 18 N -0.49 -18.12 11.24 -179.95 -2.02 -20.14 16 19 C 0.02 0.51 7.23 39.45 0.29 0.79 16 20 C -0.08 -1.95 10.05 22.25 0.22 -1.73 16 21 C -0.11 -1.96 9.96 22.02 0.22 -1.74 16 22 C -0.09 -1.47 10.03 22.30 0.22 -1.25 16 23 C -0.12 -2.52 9.61 22.32 0.21 -2.31 16 24 C 0.03 0.99 6.69 38.86 0.26 1.25 16 25 N -0.55 -16.92 3.19 -523.68 -1.67 -18.60 16 26 C 0.48 12.27 6.34 127.77 0.81 13.08 16 27 F -0.18 -4.10 15.78 44.97 0.71 -3.39 16 28 F -0.18 -5.35 14.73 44.97 0.66 -4.69 16 29 H 0.06 2.28 7.63 -2.39 -0.02 2.26 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 3.45 5.95 -2.39 -0.01 3.43 16 33 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.33 14.58 8.06 -89.69 -0.72 13.85 16 36 H 0.06 2.25 7.50 -2.39 -0.02 2.23 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.14 2.51 7.13 -2.91 -0.02 2.49 16 43 H 0.18 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -62.84 358.92 3.18 -59.67 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.32 Total: 26.70 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.49 Total: -2.78 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.03 Total: -119.21 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 1.37 Total: -8.09 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -62.84 3.18 -59.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565843033.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.305 kcal (2) G-P(sol) polarization free energy of solvation -62.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds