Wall clock time and date at job start Tue Mar 31 2020 13:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 O 1.42896 * 109.47563 * 119.99827 * 2 1 3 5 5 C 1.35223 * 116.99787 * 84.10955 * 4 2 1 6 6 N 1.36498 * 119.71163 * 2.10429 * 5 4 2 7 7 H 0.96999 * 119.88471 * 359.97438 * 6 5 4 8 8 C 1.37594 * 120.23308 * 180.02562 * 6 5 4 9 9 N 1.31820 * 120.16173 * 180.02562 * 8 6 5 10 10 C 1.46498 * 120.00340 * 173.45408 * 9 8 6 11 11 C 1.52998 * 109.47293 * 114.20049 * 10 9 8 12 12 C 1.52996 * 109.47398 * 300.00454 * 11 10 9 13 13 C 1.53005 * 109.46592 * 60.00553 * 11 10 9 14 14 C 1.50694 * 109.47035 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00387 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00006 * 180.02562 * 14 11 10 17 17 N 1.31513 * 119.99982 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00186 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47163 * 60.00052 * 18 16 14 20 20 H 1.48506 * 109.47311 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47337 * 300.00313 * 18 16 14 22 22 C 1.41114 * 119.67755 * 0.28016 * 8 6 5 23 23 C 1.36228 * 119.43973 * 359.46001 * 22 8 6 24 24 C 1.36104 * 119.70638 * 182.13026 * 5 4 2 25 25 N 1.47999 * 119.84264 * 359.97267 * 24 5 4 26 26 O 1.21802 * 120.00099 * 180.02562 * 25 24 5 27 27 O 1.21801 * 120.00374 * 0.02562 * 25 24 5 28 28 H 1.08993 * 109.47101 * 60.00409 * 1 2 3 29 29 H 1.09006 * 109.46382 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46759 * 299.99631 * 1 2 3 31 31 H 1.08999 * 109.47481 * 240.00537 * 2 1 3 32 32 H 1.08995 * 109.47218 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47231 * 299.99892 * 3 2 1 34 34 H 1.08996 * 109.47378 * 59.99903 * 3 2 1 35 35 H 1.08996 * 109.46888 * 234.20851 * 10 9 8 36 36 H 1.09006 * 109.46949 * 354.20078 * 10 9 8 37 37 H 1.08998 * 109.47077 * 59.99929 * 12 11 10 38 38 H 1.08997 * 109.47147 * 179.97438 * 12 11 10 39 39 H 1.08992 * 109.46749 * 299.99910 * 12 11 10 40 40 H 1.09001 * 109.47607 * 59.99715 * 13 11 10 41 41 H 1.09005 * 109.46744 * 180.02562 * 13 11 10 42 42 H 1.09002 * 109.46790 * 299.99714 * 13 11 10 43 43 H 0.96998 * 120.00297 * 179.97438 * 17 16 14 44 44 H 1.07998 * 120.27597 * 179.72756 * 22 8 6 45 45 H 1.07998 * 120.12600 * 180.25403 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0945 -2.0215 1.1044 6 7 1.7754 -2.6674 -0.0549 7 1 1.4868 -2.1581 -0.8283 8 6 1.8607 -4.0387 -0.1301 9 7 1.5527 -4.6610 -1.2506 10 6 1.7804 -6.1029 -1.3742 11 6 0.4365 -6.8219 -1.5079 12 6 -0.4159 -6.5446 -0.2680 13 6 -0.2928 -6.3122 -2.7527 14 6 0.6709 -8.3050 -1.6356 15 1 1.6776 -8.6958 -1.6223 16 6 -0.4000 -9.1631 -1.7695 17 7 -1.6259 -8.6872 -1.7862 18 14 -0.1096 -11.0017 -1.9271 19 1 0.5977 -11.4965 -0.7188 20 1 -1.4140 -11.6995 -2.0571 21 1 0.7183 -11.2707 -3.1302 22 6 2.2743 -4.7760 0.9998 23 6 2.5948 -4.1174 2.1485 24 6 2.5001 -2.7222 2.1985 25 7 2.8421 -2.0051 3.4472 26 8 3.2058 -2.6293 4.4278 27 8 2.7599 -0.7908 3.4942 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1299 1.4427 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.3877 -6.3004 -2.2574 36 1 2.3001 -6.4660 -0.4874 37 1 -0.5854 -5.4718 -0.1761 38 1 -1.3735 -7.0564 -0.3635 39 1 0.1037 -6.9076 0.6186 40 1 0.3145 -6.5098 -3.6360 41 1 -1.2504 -6.8241 -2.8477 42 1 -0.4622 -5.2394 -2.6607 43 1 -2.3792 -9.2908 -1.8808 44 1 2.3405 -5.8529 0.9529 45 1 2.9166 -4.6703 3.0185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566571390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:01 Heat of formation + Delta-G solvation = 0.963031 kcal Electronic energy + Delta-G solvation = -28253.148249 eV Core-core repulsion = 24274.962416 eV Total energy + Delta-G solvation = -3978.185833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.32759 -42.30258 -40.17935 -38.19890 -37.37804 -35.77216 -34.90321 -34.34276 -32.86202 -30.73729 -28.38163 -27.76160 -27.52256 -27.17844 -26.26876 -25.04047 -23.36606 -22.77728 -21.26106 -20.63247 -19.77755 -19.28553 -18.53655 -18.13554 -17.94509 -17.46240 -17.32873 -16.75243 -16.68794 -16.01627 -15.66326 -15.11012 -14.86481 -14.48859 -14.30837 -14.02324 -13.88957 -13.59682 -13.27523 -13.22221 -13.12404 -13.07782 -12.67617 -12.58536 -12.46140 -12.33993 -12.25874 -12.22621 -12.11936 -12.08341 -12.04221 -11.94095 -11.59386 -11.38447 -10.86368 -10.70331 -10.38530 -10.13544 -8.66965 -7.98249 -6.16774 -0.83865 -0.26640 0.34834 0.69268 0.91352 1.44626 1.45551 1.51608 1.53104 2.17964 2.46125 3.05567 3.23880 3.40315 3.45387 3.62528 3.72205 3.82554 3.94788 4.24625 4.39067 4.51967 4.56847 4.63912 4.66188 4.75385 4.77350 4.78855 4.90237 5.04061 5.07710 5.08525 5.14471 5.20121 5.24148 5.33367 5.43950 5.49269 5.52132 5.66688 5.69435 5.79574 6.13076 6.26231 6.44616 6.77601 6.80143 6.94126 7.51588 8.99159 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.003226 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.810080 B = 8678.440795 C = 9716.097477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 C -0.143 4.143 4 O -0.265 6.265 5 C 0.492 3.508 6 N -0.587 5.587 7 H 0.438 0.562 8 C 0.379 3.621 9 N -0.569 5.569 10 C 0.082 3.918 11 C 0.065 3.935 12 C -0.110 4.110 13 C -0.107 4.107 14 C -0.527 4.527 15 H 0.053 0.947 16 C 0.024 3.976 17 N -0.905 5.905 18 Si 0.946 3.054 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.218 4.218 23 C 0.004 3.996 24 C -0.210 4.210 25 N 0.071 4.929 26 O -0.219 6.219 27 O -0.182 6.182 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.014 0.986 38 H 0.053 0.947 39 H 0.022 0.978 40 H 0.015 0.985 41 H 0.049 0.951 42 H 0.025 0.975 43 H 0.257 0.743 44 H 0.162 0.838 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.401 19.532 2.557 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.008 4.008 3 C -0.200 4.200 4 O -0.168 6.168 5 C 0.324 3.676 6 N -0.221 5.221 7 H 0.283 0.717 8 C 0.108 3.892 9 N -0.291 5.291 10 C -0.048 4.048 11 C 0.065 3.935 12 C -0.168 4.168 13 C -0.165 4.165 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.176 4.176 17 N -0.544 5.544 18 Si 0.772 3.228 19 H -0.198 1.198 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.241 4.241 23 C -0.020 4.020 24 C -0.306 4.306 25 N 0.575 4.425 26 O -0.419 6.419 27 O -0.393 6.393 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.179 0.821 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.764 19.321 1.255 20.202 hybrid contribution -0.009 -1.379 0.382 1.431 sum 5.755 17.942 1.637 18.913 Atomic orbital electron populations 1.22509 0.92566 1.03255 1.05959 1.23351 0.96287 0.96136 0.85004 1.21914 1.02587 0.90261 1.05238 1.86755 1.77191 1.11078 1.41785 1.18376 0.81915 0.82776 0.84547 1.41973 1.61219 1.06536 1.12419 0.71711 1.18648 0.95024 0.82313 0.93197 1.72297 1.21744 1.12802 1.22230 1.22176 0.98693 0.83794 1.00111 1.18167 0.90203 0.92610 0.92558 1.21563 1.01662 0.96298 0.97264 1.21501 1.00849 0.96909 0.97249 1.21388 0.92711 0.92292 1.50186 0.92887 1.25543 0.95051 1.02062 0.94901 1.69962 0.98424 1.35337 1.50677 0.85809 0.77052 0.81249 0.78658 1.19841 1.21421 1.19980 1.21623 1.08514 1.01948 0.92065 1.20513 0.92746 0.89109 0.99636 1.19070 1.33521 0.92581 0.85467 1.42894 0.97265 1.00667 1.01678 1.94505 1.52210 1.68943 1.26286 1.94511 1.58280 0.96008 1.90516 0.87034 0.93201 0.90432 0.88762 0.91151 0.86974 0.90703 0.91423 0.93424 0.96716 0.92859 0.95919 0.96546 0.93170 0.95584 0.93320 0.82117 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 9.30 71.98 0.67 -1.19 16 2 C 0.05 0.50 2.87 30.60 0.09 0.59 16 3 C -0.14 -1.01 9.56 71.98 0.69 -0.32 16 4 O -0.26 -4.93 7.64 -63.41 -0.48 -5.41 16 5 C 0.49 10.80 7.32 83.47 0.61 11.41 16 6 N -0.59 -12.54 4.98 -303.64 -1.51 -14.06 16 7 H 0.44 7.17 6.06 -92.71 -0.56 6.61 16 8 C 0.38 10.85 7.45 134.20 1.00 11.85 16 9 N -0.57 -19.54 9.19 -344.90 -3.17 -22.71 16 10 C 0.08 3.23 5.01 86.38 0.43 3.67 16 11 C 0.07 3.07 0.57 -52.93 -0.03 3.04 16 12 C -0.11 -5.16 8.09 71.98 0.58 -4.58 16 13 C -0.11 -5.15 8.09 71.98 0.58 -4.57 16 14 C -0.53 -27.40 8.01 25.60 0.21 -27.20 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C 0.02 1.25 5.15 84.65 0.44 1.69 16 17 N -0.91 -49.76 9.35 21.45 0.20 -49.56 16 18 Si 0.95 42.23 29.54 68.60 2.03 44.26 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 C -0.22 -6.10 9.18 22.51 0.21 -5.89 16 23 C 0.00 0.11 9.55 22.21 0.21 0.32 16 24 C -0.21 -5.52 6.83 36.29 0.25 -5.28 16 25 N 0.07 2.13 4.45 -46.68 -0.21 1.92 16 26 O -0.22 -7.00 18.46 18.88 0.35 -6.65 16 27 O -0.18 -5.52 17.13 25.75 0.44 -5.08 16 28 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.67 7.70 -2.38 -0.02 0.65 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.71 6.24 -2.39 -0.01 0.70 16 32 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.05 1.78 5.25 -2.38 -0.01 1.77 16 37 H 0.01 0.62 7.43 -2.39 -0.02 0.60 16 38 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 39 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.05 2.67 6.07 -2.38 -0.01 2.65 16 42 H 0.03 1.14 7.60 -2.39 -0.02 1.12 16 43 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.16 4.73 5.79 -2.91 -0.02 4.72 16 45 H 0.17 3.81 7.64 -2.91 -0.02 3.79 16 Total: -1.00 -64.25 366.09 4.03 -60.22 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.46 Total: 13.54 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 5.93 Total: -16.48 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -4.69 Total: -84.40 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.31 Total: -17.15 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -64.25 4.03 -60.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566571390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.183 kcal (2) G-P(sol) polarization free energy of solvation -64.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds