Wall clock time and date at job start Tue Mar 31 2020 14:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47047 * 2 1 4 4 C 1.52998 * 109.47065 * 120.00238 * 2 1 3 5 5 C 1.53006 * 109.47078 * 185.00152 * 4 2 1 6 6 F 1.39894 * 109.47302 * 59.99714 * 5 4 2 7 7 F 1.39901 * 109.47078 * 180.02562 * 5 4 2 8 8 F 1.39902 * 109.46705 * 299.99794 * 5 4 2 9 9 N 1.46495 * 109.47287 * 240.00189 * 2 1 3 10 10 C 1.34778 * 120.00011 * 84.99665 * 9 2 1 11 11 O 1.21584 * 119.99833 * 5.08876 * 10 9 2 12 12 N 1.34775 * 120.00046 * 185.09032 * 10 9 2 13 13 C 1.47079 * 120.88047 * 354.71181 * 12 10 9 14 14 C 1.53709 * 108.27278 * 128.75748 * 13 12 10 15 15 N 1.46899 * 109.25620 * 54.08542 * 14 13 12 16 16 C 1.46898 * 110.99917 * 172.60428 * 15 14 13 17 17 C 1.50701 * 109.47524 * 294.30267 * 16 15 14 18 18 H 1.08004 * 119.99328 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00260 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47304 * 89.99537 * 21 19 17 23 23 H 1.48498 * 109.47462 * 210.00020 * 21 19 17 24 24 H 1.48501 * 109.46588 * 330.00137 * 21 19 17 25 25 C 1.46899 * 111.26746 * 296.75832 * 15 14 13 26 26 C 1.47076 * 120.88411 * 174.99811 * 12 10 9 27 27 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47171 * 299.99777 * 1 2 3 29 29 H 1.08998 * 109.47202 * 59.99843 * 1 2 3 30 30 H 1.09003 * 109.47367 * 304.99952 * 4 2 1 31 31 H 1.08996 * 109.47711 * 65.00127 * 4 2 1 32 32 H 0.97007 * 120.00278 * 265.00300 * 9 2 1 33 33 H 1.08999 * 109.63325 * 248.52457 * 13 12 10 34 34 H 1.09003 * 109.63249 * 9.10894 * 13 12 10 35 35 H 1.08997 * 109.64579 * 294.07937 * 14 13 12 36 36 H 1.09004 * 109.44016 * 173.96481 * 14 13 12 37 37 H 1.08998 * 109.47071 * 54.30485 * 16 15 14 38 38 H 1.08999 * 109.47043 * 174.30302 * 16 15 14 39 39 H 0.96998 * 120.00037 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.49233 * 303.14179 * 25 15 14 41 41 H 1.08998 * 109.49126 * 183.06576 * 25 15 14 42 42 H 1.09002 * 109.62798 * 350.89497 * 26 12 10 43 43 H 1.09005 * 109.63212 * 111.47299 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 9 3.9350 0.7346 1.3697 7 9 4.0312 -1.2733 2.4556 8 9 4.1226 -1.2031 0.1742 9 7 2.0184 -0.6905 -1.1961 10 6 2.1470 -0.0182 -2.3571 11 8 1.9469 1.1806 -2.3907 12 7 2.4975 -0.6746 -3.4808 13 6 2.8563 -2.1005 -3.4413 14 6 2.0282 -2.8354 -4.5075 15 7 2.2241 -2.1821 -5.8085 16 6 1.5917 -2.9546 -6.8861 17 6 2.2939 -4.2800 -7.0329 18 1 3.1264 -4.5241 -6.3896 19 6 1.8735 -5.1807 -7.9882 20 7 0.8594 -4.8836 -8.7712 21 14 2.7434 -6.8238 -8.1698 22 1 2.0912 -7.8288 -7.2924 23 1 2.6624 -7.2734 -9.5827 24 1 4.1681 -6.6754 -7.7783 25 6 1.7278 -0.7996 -5.7906 26 6 2.5375 0.0173 -4.7780 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -0.2618 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 2.2491 -1.6318 -1.1527 33 1 3.9189 -2.2168 -3.6542 34 1 2.6307 -2.5077 -2.4557 35 1 0.9724 -2.8019 -4.2389 36 1 2.3551 -3.8735 -4.5688 37 1 0.5425 -3.1241 -6.6441 38 1 1.6638 -2.3997 -7.8215 39 1 0.5639 -5.5172 -9.4436 40 1 0.6761 -0.7944 -5.5042 41 1 1.8372 -0.3610 -6.7824 42 1 2.1012 1.0110 -4.6766 43 1 3.5702 0.1006 -5.1170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601597185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:39 Heat of formation + Delta-G solvation = -171.349995 kcal Electronic energy + Delta-G solvation = -28778.015559 eV Core-core repulsion = 24250.500931 eV Total energy + Delta-G solvation = -4527.514627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.36800 -47.88477 -47.82013 -40.34906 -37.94510 -36.37193 -34.41076 -32.65525 -31.94386 -30.53023 -29.36001 -28.07357 -25.51608 -24.17564 -23.34367 -22.47009 -21.61687 -20.69215 -19.48733 -18.78647 -18.66091 -18.08428 -17.51571 -16.57912 -16.34931 -15.40623 -15.14359 -14.81120 -14.74069 -14.63084 -14.41926 -14.26182 -14.15934 -14.00076 -13.98267 -13.86731 -13.59204 -13.47776 -13.45476 -13.01229 -12.79030 -12.53270 -12.22065 -11.93446 -11.79805 -11.45822 -11.28252 -11.06248 -10.97751 -10.76683 -10.64907 -10.55186 -9.99140 -9.87005 -9.31651 -9.25345 -8.50915 -8.35035 -7.33346 -6.08160 -4.10326 2.43376 2.61684 3.25873 3.27600 3.34665 3.38393 3.45838 3.58281 3.68468 3.90442 4.36107 4.37515 4.59368 4.76913 4.83375 4.95913 5.08462 5.23726 5.28062 5.35028 5.38715 5.43249 5.61653 5.65463 5.77603 5.85386 5.91166 6.07426 6.28848 6.35296 6.42870 6.45365 6.62427 7.01365 7.20990 7.26441 7.72161 7.96014 8.00423 8.11168 8.45816 8.64225 8.96972 9.54378 11.02618 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.002957 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.194478 B = 9466.339668 C =10217.667372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.103 0.897 4 C -0.177 4.177 5 C 0.452 3.548 6 F -0.181 7.181 7 F -0.187 7.187 8 F -0.177 7.177 9 N -0.748 5.748 10 C 0.712 3.288 11 O -0.597 6.597 12 N -0.623 5.623 13 C 0.116 3.884 14 C 0.052 3.948 15 N -0.535 5.535 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.041 3.959 26 C 0.137 3.863 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.398 0.602 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.096 0.904 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 7.914 21.711 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.121 0.879 4 C -0.215 4.215 5 C 0.397 3.603 6 F -0.163 7.163 7 F -0.168 7.168 8 F -0.159 7.159 9 N -0.408 5.408 10 C 0.414 3.586 11 O -0.476 6.476 12 N -0.360 5.360 13 C -0.008 4.008 14 C -0.078 4.078 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.089 4.089 26 C 0.014 3.986 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.235 0.765 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.114 0.886 37 H 0.008 0.992 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.463 8.737 21.419 23.179 hybrid contribution -0.143 -1.584 -0.024 1.591 sum 1.321 7.153 21.395 22.597 Atomic orbital electron populations 1.22163 0.93710 1.02744 1.03307 1.20696 0.95163 0.97609 0.81340 0.87942 1.23302 0.88833 1.06602 1.02806 1.20531 0.92372 0.73821 0.73526 1.93202 1.93283 1.33723 1.96051 1.93195 1.90872 1.81163 1.51600 1.93205 1.87658 1.83953 1.51077 1.45408 1.72509 1.13960 1.08918 1.15732 0.77747 0.84876 0.80247 1.90880 1.59059 1.12615 1.84998 1.47374 1.70835 1.11035 1.06719 1.21960 1.00523 0.79731 0.98566 1.22398 0.96721 0.99411 0.89242 1.62060 1.58990 1.00789 1.04158 1.19726 0.92377 0.92729 0.88284 1.21137 1.15851 0.99887 1.17951 0.91806 1.24994 0.95163 0.98731 0.95684 1.69957 1.26361 1.36178 1.21203 0.86499 0.80057 0.83600 0.77275 1.20759 1.21248 1.19720 1.22435 0.96030 0.91550 0.98871 1.21639 1.00949 0.95715 0.80344 0.92005 0.91307 0.91032 0.85628 0.86600 0.76453 0.90536 0.91343 0.95741 0.88591 0.99156 0.94991 0.92861 0.95596 0.90019 0.89372 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.16 1.37 2.56 -67.93 -0.17 1.20 16 3 H 0.10 1.09 7.03 -51.93 -0.37 0.73 16 4 C -0.18 -1.00 4.88 -26.73 -0.13 -1.13 16 5 C 0.45 3.86 3.16 37.16 0.12 3.98 16 6 F -0.18 -1.86 16.71 2.25 0.04 -1.83 16 7 F -0.19 -1.63 17.32 2.25 0.04 -1.59 16 8 F -0.18 -1.84 15.18 2.25 0.03 -1.80 16 9 N -0.75 -8.27 3.72 -58.68 -0.22 -8.48 16 10 C 0.71 10.73 8.27 -86.92 -0.72 10.01 16 11 O -0.60 -10.79 15.45 5.29 0.08 -10.70 16 12 N -0.62 -9.46 3.00 -177.90 -0.53 -10.00 16 13 C 0.12 1.63 6.63 -3.36 -0.02 1.61 16 14 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 15 N -0.53 -10.95 4.62 -235.46 -1.09 -12.04 16 16 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 17 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 18 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 25 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 26 C 0.14 2.15 6.58 -3.61 -0.02 2.13 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 3.77 5.36 -40.82 -0.22 3.55 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.75 5.63 -51.93 -0.29 0.46 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.10 1.80 6.67 -51.93 -0.35 1.46 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 38 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 42 H 0.09 1.38 7.10 -51.93 -0.37 1.01 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -32.31 355.96 -7.77 -40.08 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.16 Total: -0.36 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -1.05 Total: 10.77 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -1.10 Total: -55.89 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.31 -7.77 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601597185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.267 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds