Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47047 * 2 1 4 4 C 1.52998 * 109.47065 * 120.00238 * 2 1 3 5 5 C 1.53006 * 109.47078 * 185.00152 * 4 2 1 6 6 F 1.39894 * 109.47302 * 59.99714 * 5 4 2 7 7 F 1.39901 * 109.47078 * 180.02562 * 5 4 2 8 8 F 1.39902 * 109.46705 * 299.99794 * 5 4 2 9 9 N 1.46495 * 109.47287 * 240.00189 * 2 1 3 10 10 C 1.34778 * 120.00011 * 84.99665 * 9 2 1 11 11 O 1.21584 * 119.99833 * 5.08876 * 10 9 2 12 12 N 1.34775 * 120.00046 * 185.09032 * 10 9 2 13 13 C 1.47079 * 120.88047 * 354.71181 * 12 10 9 14 14 C 1.53709 * 108.27278 * 128.75748 * 13 12 10 15 15 N 1.46899 * 109.25620 * 54.08542 * 14 13 12 16 16 C 1.46898 * 110.99917 * 172.60428 * 15 14 13 17 17 C 1.50701 * 109.47524 * 294.30267 * 16 15 14 18 18 H 1.08004 * 119.99328 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00260 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00253 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47304 * 89.99537 * 21 19 17 23 23 H 1.48498 * 109.47462 * 210.00020 * 21 19 17 24 24 H 1.48501 * 109.46588 * 330.00137 * 21 19 17 25 25 C 1.46899 * 111.26746 * 296.75832 * 15 14 13 26 26 C 1.47076 * 120.88411 * 174.99811 * 12 10 9 27 27 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47171 * 299.99777 * 1 2 3 29 29 H 1.08998 * 109.47202 * 59.99843 * 1 2 3 30 30 H 1.09003 * 109.47367 * 304.99952 * 4 2 1 31 31 H 1.08996 * 109.47711 * 65.00127 * 4 2 1 32 32 H 0.97007 * 120.00278 * 265.00300 * 9 2 1 33 33 H 1.08999 * 109.63325 * 248.52457 * 13 12 10 34 34 H 1.09003 * 109.63249 * 9.10894 * 13 12 10 35 35 H 1.08997 * 109.64579 * 294.07937 * 14 13 12 36 36 H 1.09004 * 109.44016 * 173.96481 * 14 13 12 37 37 H 1.08998 * 109.47071 * 54.30485 * 16 15 14 38 38 H 1.08999 * 109.47043 * 174.30302 * 16 15 14 39 39 H 0.96998 * 120.00037 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.49233 * 303.14179 * 25 15 14 41 41 H 1.08998 * 109.49126 * 183.06576 * 25 15 14 42 42 H 1.09002 * 109.62798 * 350.89497 * 26 12 10 43 43 H 1.09005 * 109.63212 * 111.47299 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3137 6 9 3.9350 0.7346 1.3697 7 9 4.0312 -1.2733 2.4556 8 9 4.1226 -1.2031 0.1742 9 7 2.0184 -0.6905 -1.1961 10 6 2.1470 -0.0182 -2.3571 11 8 1.9469 1.1806 -2.3907 12 7 2.4975 -0.6746 -3.4808 13 6 2.8563 -2.1005 -3.4413 14 6 2.0282 -2.8354 -4.5075 15 7 2.2241 -2.1821 -5.8085 16 6 1.5917 -2.9546 -6.8861 17 6 2.2939 -4.2800 -7.0329 18 1 3.1264 -4.5241 -6.3896 19 6 1.8735 -5.1807 -7.9882 20 7 0.8594 -4.8836 -8.7712 21 14 2.7434 -6.8238 -8.1698 22 1 2.0912 -7.8288 -7.2924 23 1 2.6624 -7.2734 -9.5827 24 1 4.1681 -6.6754 -7.7783 25 6 1.7278 -0.7996 -5.7906 26 6 2.5375 0.0173 -4.7780 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -0.2618 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 2.2491 -1.6318 -1.1527 33 1 3.9189 -2.2168 -3.6542 34 1 2.6307 -2.5077 -2.4557 35 1 0.9724 -2.8019 -4.2389 36 1 2.3551 -3.8735 -4.5688 37 1 0.5425 -3.1241 -6.6441 38 1 1.6638 -2.3997 -7.8215 39 1 0.5639 -5.5172 -9.4436 40 1 0.6761 -0.7944 -5.5042 41 1 1.8372 -0.3610 -6.7824 42 1 2.1012 1.0110 -4.6766 43 1 3.5702 0.1006 -5.1170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601597185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = -192.913006 kcal Electronic energy + Delta-G solvation = -28778.950601 eV Core-core repulsion = 24250.500931 eV Total energy + Delta-G solvation = -4528.449670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.05285 -48.56346 -48.54223 -41.51558 -39.28283 -37.34177 -35.95903 -34.46478 -33.08029 -31.77706 -30.13073 -29.68129 -27.19091 -24.92705 -24.69971 -23.94829 -22.78352 -21.88977 -20.67647 -19.49507 -19.44515 -19.07775 -18.48219 -18.28492 -17.53573 -16.73385 -16.55770 -16.11538 -15.98772 -15.61505 -15.44666 -15.34209 -15.32586 -14.98619 -14.95999 -14.73154 -14.69865 -14.54560 -14.32738 -14.11099 -13.80691 -13.59288 -13.37604 -13.14608 -12.96165 -12.76937 -12.59811 -12.48870 -12.40085 -12.30084 -12.13745 -12.06465 -11.75756 -11.27169 -11.21667 -10.60861 -10.29840 -9.61966 -9.03278 -8.19128 -6.29488 1.44012 1.45679 1.56520 1.57556 1.84040 2.09489 2.42022 2.76223 2.90355 2.97085 3.13307 3.14763 3.23969 3.75443 3.94396 4.04062 4.07246 4.16797 4.24204 4.24525 4.43223 4.45045 4.52578 4.61049 4.74145 4.76830 4.85117 4.94646 4.95340 5.02419 5.19027 5.24002 5.29075 5.43419 5.49435 5.64872 5.90756 6.04180 6.29138 6.56991 6.86339 6.89449 7.40691 7.50005 8.92198 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.002957 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.194478 B = 9466.339668 C =10217.667372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.153 3.847 3 H 0.080 0.920 4 C -0.162 4.162 5 C 0.445 3.555 6 F -0.195 7.195 7 F -0.188 7.188 8 F -0.191 7.191 9 N -0.736 5.736 10 C 0.709 3.291 11 O -0.630 6.630 12 N -0.629 5.629 13 C 0.127 3.873 14 C 0.052 3.948 15 N -0.539 5.539 16 C 0.209 3.791 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.001 3.999 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.262 1.262 25 C 0.045 3.955 26 C 0.146 3.854 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.038 0.962 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.407 0.593 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.017 0.983 36 H 0.086 0.914 37 H -0.040 1.040 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.016 0.984 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 6.736 24.126 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.099 0.901 4 C -0.200 4.200 5 C 0.391 3.609 6 F -0.177 7.177 7 F -0.169 7.169 8 F -0.172 7.172 9 N -0.395 5.395 10 C 0.410 3.590 11 O -0.512 6.512 12 N -0.365 5.365 13 C 0.004 3.996 14 C -0.077 4.077 15 N -0.264 5.264 16 C 0.082 3.918 17 C -0.559 4.559 18 H 0.088 0.912 19 C -0.197 4.197 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.186 1.186 25 C -0.084 4.084 26 C 0.023 3.977 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.057 0.943 30 H 0.176 0.824 31 H 0.161 0.839 32 H 0.246 0.754 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.035 0.965 36 H 0.105 0.895 37 H -0.023 1.023 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.139 7.548 23.889 25.144 hybrid contribution -0.369 -1.153 -0.733 1.415 sum 1.770 6.395 23.156 24.088 Atomic orbital electron populations 1.22107 0.92631 1.03532 1.03030 1.20854 0.95931 0.96837 0.81578 0.90147 1.23345 0.86300 1.08199 1.02170 1.21020 0.93818 0.73042 0.73034 1.93177 1.93578 1.34872 1.96078 1.93193 1.91068 1.81084 1.51561 1.93175 1.88109 1.84101 1.51851 1.45400 1.71447 1.14287 1.08385 1.15898 0.77471 0.84593 0.80994 1.90857 1.60458 1.14234 1.85611 1.47403 1.71062 1.11396 1.06652 1.21924 0.99895 0.78749 0.99002 1.22428 0.97047 0.99346 0.88831 1.61990 1.58380 1.01576 1.04455 1.19372 0.90860 0.92735 0.88786 1.21456 1.15906 1.00554 1.17960 0.91229 1.25928 0.95805 1.02719 0.95259 1.70096 1.27995 1.37667 1.21963 0.85365 0.79203 0.78766 0.77182 1.19700 1.21239 1.18647 1.22445 0.95813 0.90385 0.99806 1.21465 1.00758 0.95250 0.80273 0.90629 0.88653 0.94275 0.82436 0.83896 0.75357 0.90051 0.87684 0.96502 0.89542 1.02263 0.97770 0.92759 0.96610 0.90039 0.89279 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.48 71.98 0.68 -1.33 16 2 C 0.15 2.32 2.56 44.99 0.11 2.43 16 3 H 0.08 1.63 7.03 -2.39 -0.02 1.62 16 4 C -0.16 -1.25 4.88 30.60 0.15 -1.10 16 5 C 0.44 6.56 3.16 71.98 0.23 6.78 16 6 F -0.20 -3.77 16.71 44.97 0.75 -3.01 16 7 F -0.19 -2.82 17.32 44.97 0.78 -2.04 16 8 F -0.19 -3.54 15.18 44.97 0.68 -2.86 16 9 N -0.74 -14.76 3.72 -457.83 -1.70 -16.47 16 10 C 0.71 20.63 8.27 179.05 1.48 22.11 16 11 O -0.63 -22.69 15.45 -3.98 -0.06 -22.76 16 12 N -0.63 -18.42 3.00 -835.02 -2.51 -20.93 16 13 C 0.13 3.34 6.63 86.51 0.57 3.92 16 14 C 0.05 1.84 5.47 86.54 0.47 2.31 16 15 N -0.54 -22.38 4.62 -898.87 -4.15 -26.53 16 16 C 0.21 10.86 4.72 85.56 0.40 11.26 16 17 C -0.52 -28.32 8.41 25.60 0.22 -28.10 16 18 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 19 C 0.00 0.05 5.46 84.65 0.46 0.51 16 20 N -0.94 -55.56 13.29 21.44 0.28 -55.27 16 21 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 C 0.04 1.62 5.62 86.38 0.49 2.11 16 26 C 0.15 4.56 6.58 86.35 0.57 5.13 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.41 6.49 5.36 -92.70 -0.50 5.99 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.11 1.98 5.63 -2.39 -0.01 1.97 16 35 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 3.20 6.67 -2.38 -0.02 3.18 16 37 H -0.04 -2.31 8.12 -2.39 -0.02 -2.32 16 38 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 42 H 0.09 2.80 7.10 -2.39 -0.02 2.78 16 43 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -72.11 355.96 2.47 -69.63 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.54 Total: 9.35 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 5.84 Total: 26.03 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -8.08 Total: -119.20 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 9 Polarization: -10.13 SS G_CDS: 2.21 Total: -7.92 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.11 2.47 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601597185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.280 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds