Wall clock time and date at job start Tue Mar 31 2020 14:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46968 * 110.99862 * 293.80191 * 14 13 2 16 16 C 1.53050 * 109.36198 * 176.80844 * 15 14 13 17 17 N 1.46955 * 109.36643 * 58.40132 * 16 15 14 18 18 C 1.39063 * 111.00002 * 176.80773 * 17 16 15 19 19 C 1.39129 * 119.69355 * 303.52849 * 18 17 16 20 20 C 1.38302 * 119.10743 * 179.73335 * 19 18 17 21 21 C 1.38974 * 118.49545 * 0.52972 * 20 19 18 22 22 Cl 1.73596 * 120.34689 * 179.75429 * 21 20 19 23 23 C 1.38131 * 119.30412 * 359.73262 * 21 20 19 24 24 N 1.31979 * 120.83614 * 359.97438 * 23 21 20 25 25 C 1.46959 * 110.88152 * 300.67963 * 17 16 15 26 26 C 1.46954 * 111.00429 * 170.00449 * 14 13 2 27 27 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 28 28 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 30 30 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 31 31 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 34 34 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 35 35 H 1.08996 * 109.48634 * 296.77324 * 15 14 13 36 36 H 1.09000 * 109.48905 * 56.83946 * 15 14 13 37 37 H 1.08996 * 109.49217 * 298.43226 * 16 15 14 38 38 H 1.09001 * 109.48552 * 178.36571 * 16 15 14 39 39 H 1.07997 * 120.44193 * 359.97438 * 19 18 17 40 40 H 1.08000 * 120.74888 * 180.26290 * 20 19 18 41 41 H 1.07993 * 119.57810 * 180.02562 * 23 21 20 42 42 H 1.08996 * 109.48433 * 299.35413 * 25 17 16 43 43 H 1.09000 * 109.48999 * 179.28856 * 25 17 16 44 44 H 1.09001 * 109.48388 * 303.15237 * 26 14 13 45 45 H 1.08996 * 109.49112 * 63.21727 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3373 1.3363 2.4913 16 6 1.8468 2.1266 3.7068 17 7 2.1079 1.3531 4.9287 18 6 1.7401 2.0713 6.0613 19 6 2.2890 3.3295 6.2879 20 6 1.9105 4.0355 7.4153 21 6 0.9998 3.4523 8.2881 22 17 0.4963 4.2930 9.7210 23 6 0.4992 2.1968 8.0034 24 7 0.8747 1.5493 6.9163 25 6 1.4221 0.0541 4.8830 26 6 1.9126 -0.7362 3.6675 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6053 -1.7198 -1.2952 31 1 3.1262 -0.7995 -1.2056 32 1 2.9362 -2.0177 -3.0611 33 1 1.6053 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 3.4126 1.1771 2.5709 36 1 2.1184 1.8953 1.5816 37 1 0.7763 2.3093 3.6139 38 1 2.3754 3.0784 3.7590 39 1 2.9982 3.7507 5.5908 40 1 2.3167 5.0161 7.6150 41 1 -0.2090 1.7396 8.6784 42 1 0.3468 0.2133 4.8034 43 1 1.6410 -0.5049 5.7928 44 1 1.3841 -1.6880 3.6153 45 1 2.9832 -0.9189 3.7604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602438805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:27 Heat of formation + Delta-G solvation = 33.880044 kcal Electronic energy + Delta-G solvation = -24689.554796 eV Core-core repulsion = 21153.505516 eV Total energy + Delta-G solvation = -3536.049280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13324 -39.13979 -37.14049 -36.37712 -34.32007 -33.01397 -32.18919 -31.04101 -30.35117 -27.36095 -26.39508 -24.87192 -24.54496 -23.12512 -22.81372 -22.16693 -20.03801 -19.09277 -18.13834 -17.11969 -16.83562 -16.67064 -15.60056 -15.23177 -15.03729 -14.76186 -14.61178 -14.38319 -14.15355 -13.72187 -13.69333 -13.40728 -13.22784 -12.88143 -12.37997 -12.28062 -11.97779 -11.72693 -11.64027 -11.49141 -11.37394 -11.18654 -11.03518 -10.95172 -10.66118 -10.30842 -10.25724 -10.10838 -10.07652 -9.88509 -9.72153 -9.43965 -8.48167 -8.39931 -8.29707 -8.15806 -6.32280 -4.00480 0.54639 0.75620 1.67470 3.02747 3.38327 3.44800 3.46694 3.65268 3.97403 3.99478 4.32455 4.51788 4.52564 4.57057 4.73671 4.90941 5.03394 5.15548 5.19260 5.27953 5.30812 5.39958 5.43854 5.50423 5.57121 5.69761 5.71187 5.81098 5.84325 5.87771 6.02966 6.03482 6.26511 6.37178 6.40855 6.57201 6.75105 6.87149 7.00762 7.09751 7.22205 7.26452 7.42064 7.49999 7.59011 8.26614 8.50228 8.92595 9.70882 11.08040 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.002054 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.642905 B =13626.822214 C =14037.110614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 H 0.057 0.943 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.053 3.947 16 C 0.064 3.936 17 N -0.477 5.477 18 C 0.324 3.676 19 C -0.176 4.176 20 C -0.043 4.043 21 C -0.124 4.124 22 Cl -0.062 7.062 23 C 0.145 3.855 24 N -0.506 5.506 25 C 0.071 3.929 26 C 0.051 3.949 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.007 0.993 31 H 0.003 0.997 32 H 0.268 0.732 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 9.913 26.080 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.067 0.933 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.261 5.261 15 C -0.075 4.075 16 C -0.062 4.062 17 N -0.194 5.194 18 C 0.092 3.908 19 C -0.199 4.199 20 C -0.069 4.069 21 C -0.155 4.155 22 Cl -0.034 7.034 23 C -0.014 4.014 24 N -0.220 5.220 25 C -0.055 4.055 26 C -0.077 4.077 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.461 9.116 24.275 26.047 hybrid contribution 0.471 0.801 2.095 2.291 sum -1.989 9.917 26.370 28.243 Atomic orbital electron populations 1.21567 0.95528 1.00539 1.00248 1.21088 0.96093 0.98936 0.93139 0.92468 1.19255 0.95119 0.95636 0.92361 1.22011 1.38663 1.10200 0.92229 0.93254 1.25822 0.94754 0.97185 1.01390 1.70782 1.35910 1.15020 1.33482 0.83571 0.76052 0.75131 0.75695 1.20871 1.21489 1.21538 1.22325 0.97676 0.97234 0.89384 1.62216 1.57856 1.03763 1.02238 1.22225 0.96584 0.91418 0.97287 1.22407 1.00943 0.96137 0.86684 1.59309 1.53917 1.05180 1.01006 1.20046 0.88893 0.89734 0.92169 1.21601 1.03656 0.94994 0.99639 1.21378 0.93740 0.99929 0.91864 1.21873 1.04005 0.96506 0.93085 1.98373 1.90361 1.77578 1.37042 1.22546 0.96301 0.89517 0.93053 1.67816 1.13041 1.36386 1.04787 1.22098 0.97406 0.87585 0.98449 1.22240 0.99473 0.96836 0.89159 0.92647 0.94270 0.93902 0.97512 0.97891 0.92197 0.91177 0.95214 0.93899 0.88695 0.92381 0.89532 0.83624 0.83656 0.81876 0.92053 0.89449 0.89799 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.07 -1.47 2.26 -90.62 -0.21 -1.68 16 3 H 0.06 1.15 6.28 -51.93 -0.33 0.83 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.59 8.41 -34.44 -0.29 -16.88 16 6 H 0.05 1.36 7.06 -52.49 -0.37 0.99 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.09 13.65 55.43 0.76 -27.34 16 9 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.02 4.35 -3.83 -0.02 1.00 16 14 N -0.54 -7.60 4.16 -234.47 -0.98 -8.57 16 15 C 0.05 0.69 5.42 -3.76 -0.02 0.66 16 16 C 0.06 0.69 5.37 -3.77 -0.02 0.67 16 17 N -0.48 -5.36 4.73 -173.03 -0.82 -6.18 16 18 C 0.32 3.46 6.40 -154.98 -0.99 2.47 16 19 C -0.18 -1.51 9.22 -39.23 -0.36 -1.87 16 20 C -0.04 -0.32 9.97 -39.28 -0.39 -0.71 16 21 C -0.12 -1.02 6.34 -39.35 -0.25 -1.27 16 22 Cl -0.06 -0.46 28.98 -51.86 -1.50 -1.96 16 23 C 0.14 1.29 10.97 -17.53 -0.19 1.10 16 24 N -0.51 -5.52 8.71 -12.40 -0.11 -5.62 16 25 C 0.07 0.82 4.79 -3.77 -0.02 0.80 16 26 C 0.05 0.63 5.61 -3.77 -0.02 0.61 16 27 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 30 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 31 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 32 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 33 H 0.07 1.17 8.03 -51.93 -0.42 0.76 16 34 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.30 6.25 -51.93 -0.32 0.97 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.76 6.80 -51.93 -0.35 0.40 16 39 H 0.15 1.01 7.19 -52.49 -0.38 0.63 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.09 0.98 7.82 -51.93 -0.41 0.57 16 44 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -30.81 368.96 -11.88 -42.68 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.06 Total: -2.19 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.65 Total: -16.62 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -1.15 Total: -47.71 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.81 -11.88 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.564 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds