Wall clock time and date at job start Tue Mar 31 2020 14:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46968 * 110.99862 * 293.80191 * 14 13 2 16 16 C 1.53050 * 109.36198 * 176.80844 * 15 14 13 17 17 N 1.46955 * 109.36643 * 58.40132 * 16 15 14 18 18 C 1.39063 * 111.00002 * 176.80773 * 17 16 15 19 19 C 1.39129 * 119.69355 * 303.52849 * 18 17 16 20 20 C 1.38302 * 119.10743 * 179.73335 * 19 18 17 21 21 C 1.38974 * 118.49545 * 0.52972 * 20 19 18 22 22 Cl 1.73596 * 120.34689 * 179.75429 * 21 20 19 23 23 C 1.38131 * 119.30412 * 359.73262 * 21 20 19 24 24 N 1.31979 * 120.83614 * 359.97438 * 23 21 20 25 25 C 1.46959 * 110.88152 * 300.67963 * 17 16 15 26 26 C 1.46954 * 111.00429 * 170.00449 * 14 13 2 27 27 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 28 28 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 30 30 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 31 31 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 34 34 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 35 35 H 1.08996 * 109.48634 * 296.77324 * 15 14 13 36 36 H 1.09000 * 109.48905 * 56.83946 * 15 14 13 37 37 H 1.08996 * 109.49217 * 298.43226 * 16 15 14 38 38 H 1.09001 * 109.48552 * 178.36571 * 16 15 14 39 39 H 1.07997 * 120.44193 * 359.97438 * 19 18 17 40 40 H 1.08000 * 120.74888 * 180.26290 * 20 19 18 41 41 H 1.07993 * 119.57810 * 180.02562 * 23 21 20 42 42 H 1.08996 * 109.48433 * 299.35413 * 25 17 16 43 43 H 1.09000 * 109.48999 * 179.28856 * 25 17 16 44 44 H 1.09001 * 109.48388 * 303.15237 * 26 14 13 45 45 H 1.08996 * 109.49112 * 63.21727 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 1.9987 -0.1340 -6.4619 11 1 0.0184 0.6649 -5.3125 12 1 2.0863 1.9251 -5.1840 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3373 1.3363 2.4913 16 6 1.8468 2.1266 3.7068 17 7 2.1079 1.3531 4.9287 18 6 1.7401 2.0713 6.0613 19 6 2.2890 3.3295 6.2879 20 6 1.9105 4.0355 7.4153 21 6 0.9998 3.4523 8.2881 22 17 0.4963 4.2930 9.7210 23 6 0.4992 2.1968 8.0034 24 7 0.8747 1.5493 6.9163 25 6 1.4221 0.0541 4.8830 26 6 1.9126 -0.7362 3.6675 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6053 -1.7198 -1.2952 31 1 3.1262 -0.7995 -1.2056 32 1 2.9362 -2.0177 -3.0611 33 1 1.6053 -1.7199 1.2950 34 1 3.1263 -0.7996 1.2055 35 1 3.4126 1.1771 2.5709 36 1 2.1184 1.8953 1.5816 37 1 0.7763 2.3093 3.6139 38 1 2.3754 3.0784 3.7590 39 1 2.9982 3.7507 5.5908 40 1 2.3167 5.0161 7.6150 41 1 -0.2090 1.7396 8.6784 42 1 0.3468 0.2133 4.8034 43 1 1.6410 -0.5049 5.7928 44 1 1.3841 -1.6880 3.6153 45 1 2.9832 -0.9189 3.7604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602438805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:27 Heat of formation + Delta-G solvation = 16.388802 kcal Electronic energy + Delta-G solvation = -24690.313273 eV Core-core repulsion = 21153.505516 eV Total energy + Delta-G solvation = -3536.807757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88198 -40.11750 -38.06632 -37.39606 -35.86435 -34.01917 -33.68425 -31.98491 -31.24195 -28.73286 -28.08737 -26.10565 -25.59229 -24.42982 -23.86683 -23.25867 -21.09548 -20.63430 -19.01046 -18.74026 -17.81567 -17.45743 -16.51667 -16.37915 -16.11818 -16.00041 -15.60734 -15.51366 -15.31963 -15.25894 -14.93568 -14.51364 -14.24838 -13.76963 -13.60729 -13.49252 -13.35642 -13.08363 -12.94462 -12.77725 -12.50309 -12.39310 -12.28623 -12.23294 -12.03982 -11.94984 -11.84145 -11.39048 -11.26841 -10.94965 -10.84321 -10.60323 -10.53110 -10.50409 -9.35473 -9.13310 -8.63471 -6.32476 -0.13133 0.13041 1.05572 1.53309 1.61788 1.80502 2.28580 2.58632 2.66699 2.83806 3.20231 3.31525 3.71608 3.76022 3.83412 3.87675 3.96354 4.07480 4.17716 4.22230 4.30156 4.37820 4.41332 4.46423 4.59889 4.68290 4.73259 4.75836 4.78186 4.84052 4.85224 4.89974 4.95363 5.01277 5.08474 5.24971 5.33855 5.37457 5.47745 5.51777 5.65184 5.90285 6.03413 6.07800 6.12093 6.24571 6.64082 6.80172 7.48208 8.77047 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.031430 B = 0.002054 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.642905 B =13626.822214 C =14037.110614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.065 4.065 3 H 0.057 0.943 4 C 0.016 3.984 5 C -0.602 4.602 6 H 0.053 0.947 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.115 2.885 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.268 1.268 13 C 0.074 3.926 14 N -0.538 5.538 15 C 0.053 3.947 16 C 0.072 3.928 17 N -0.482 5.482 18 C 0.302 3.698 19 C -0.174 4.174 20 C -0.039 4.039 21 C -0.124 4.124 22 Cl -0.054 7.054 23 C 0.134 3.866 24 N -0.527 5.527 25 C 0.083 3.917 26 C 0.055 3.945 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.065 0.935 30 H -0.014 1.014 31 H -0.018 1.018 32 H 0.254 0.746 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.163 0.837 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 12.005 27.435 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.021 4.021 5 C -0.640 4.640 6 H 0.071 0.929 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.937 3.063 10 H -0.212 1.212 11 H -0.195 1.195 12 H -0.194 1.194 13 C -0.054 4.054 14 N -0.263 5.263 15 C -0.075 4.075 16 C -0.053 4.053 17 N -0.200 5.200 18 C 0.071 3.929 19 C -0.197 4.197 20 C -0.066 4.066 21 C -0.154 4.154 22 Cl -0.025 7.025 23 C -0.024 4.024 24 N -0.242 5.242 25 C -0.044 4.044 26 C -0.074 4.074 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.004 0.996 31 H 0.000 1.000 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.129 0.871 39 H 0.181 0.819 40 H 0.188 0.812 41 H 0.196 0.804 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.939 11.223 25.679 28.178 hybrid contribution 0.609 0.180 1.805 1.913 sum -2.330 11.403 27.484 29.847 Atomic orbital electron populations 1.21452 0.94647 1.00319 1.00397 1.20906 0.96639 0.98471 0.92325 0.92477 1.19190 0.93686 0.94900 0.94346 1.22413 1.37925 1.10317 0.93306 0.92904 1.27390 0.94164 0.97336 1.05240 1.70919 1.37947 1.16364 1.32798 0.82960 0.76911 0.74598 0.71869 1.21215 1.19484 1.19355 1.22020 0.96955 0.97054 0.89338 1.62169 1.58046 1.04204 1.01876 1.22239 0.96378 0.90793 0.98102 1.22341 1.00628 0.96640 0.85739 1.59355 1.54169 1.05054 1.01378 1.20184 0.89886 0.90725 0.92108 1.21798 1.03508 0.94175 1.00205 1.21688 0.93039 1.00747 0.91095 1.21975 1.03746 0.96334 0.93335 1.98380 1.90287 1.77293 1.36567 1.22815 0.96673 0.89996 0.92918 1.67757 1.13664 1.37257 1.05519 1.21923 0.96641 0.88030 0.97853 1.22261 0.99484 0.97083 0.88531 0.94468 0.94660 0.91597 0.99592 0.99991 0.93706 0.91252 0.96011 0.94194 0.89543 0.93198 0.87108 0.81918 0.81154 0.80448 0.93181 0.89202 0.89197 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.89 71.98 0.64 -3.57 16 2 C -0.06 -2.59 2.26 -10.79 -0.02 -2.61 16 3 H 0.06 2.29 6.28 -2.39 -0.02 2.28 16 4 C 0.02 0.84 3.76 29.85 0.11 0.95 16 5 C -0.60 -34.04 8.41 25.60 0.22 -33.82 16 6 H 0.05 2.90 7.06 -2.91 -0.02 2.88 16 7 C -0.04 -2.60 5.46 84.65 0.46 -2.14 16 8 N -0.94 -59.11 13.65 21.45 0.29 -58.82 16 9 Si 1.12 50.52 29.90 68.60 2.05 52.58 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.07 2.48 4.35 86.30 0.38 2.85 16 14 N -0.54 -14.84 4.16 -895.72 -3.73 -18.57 16 15 C 0.05 1.31 5.42 86.31 0.47 1.78 16 16 C 0.07 1.44 5.37 86.31 0.46 1.90 16 17 N -0.48 -10.14 4.73 -701.35 -3.32 -13.46 16 18 C 0.30 5.97 6.40 133.05 0.85 6.83 16 19 C -0.17 -2.56 9.22 22.50 0.21 -2.36 16 20 C -0.04 -0.49 9.97 22.46 0.22 -0.27 16 21 C -0.12 -1.77 6.34 22.42 0.14 -1.63 16 22 Cl -0.05 -0.68 28.98 -2.72 -0.08 -0.76 16 23 C 0.13 2.20 10.97 84.65 0.93 3.13 16 24 N -0.53 -10.87 8.71 -193.15 -1.68 -12.55 16 25 C 0.08 1.83 4.79 86.31 0.41 2.24 16 26 C 0.05 1.30 5.61 86.31 0.48 1.78 16 27 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 2.18 7.75 -2.39 -0.02 2.17 16 30 H -0.01 -0.79 8.01 -2.39 -0.02 -0.81 16 31 H -0.02 -1.01 8.00 -2.39 -0.02 -1.03 16 32 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 33 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 34 H 0.02 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 2.28 6.25 -2.39 -0.01 2.26 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.65 6.80 -2.39 -0.02 1.64 16 39 H 0.16 1.75 7.19 -2.91 -0.02 1.73 16 40 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.05 1.22 8.05 -2.39 -0.02 1.20 16 43 H 0.09 1.94 7.82 -2.39 -0.02 1.92 16 44 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 45 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -66.70 368.96 0.57 -66.13 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.07 Total: 10.37 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 5.96 Total: -24.93 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -8.44 Total: -103.39 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.58 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -66.70 0.57 -66.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.522 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds