Wall clock time and date at job start Tue Mar 31 2020 14:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46949 * 2 1 4 4 C 1.35754 * 116.99807 * 179.97438 * 3 2 1 5 5 N 1.32144 * 119.72293 * 0.02562 * 4 3 2 6 6 C 1.31998 * 121.71208 * 180.02562 * 5 4 3 7 7 C 1.38069 * 120.97513 * 359.97088 * 6 5 4 8 8 C 1.38742 * 119.34360 * 0.28139 * 7 6 5 9 9 C 1.38952 * 118.42557 * 359.50393 * 8 7 6 10 10 N 1.40170 * 120.50539 * 180.22103 * 9 8 7 11 11 C 1.34776 * 119.99982 * 325.81019 * 10 9 8 12 12 O 1.21593 * 120.00248 * 4.22516 * 11 10 9 13 13 N 1.34779 * 119.99895 * 184.21699 * 11 10 9 14 14 C 1.46505 * 119.99893 * 0.02562 * 13 11 10 15 15 C 1.50699 * 109.47458 * 89.99245 * 14 13 11 16 16 H 1.08000 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99956 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00158 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00279 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46840 * 90.00306 * 19 17 15 21 21 H 1.48496 * 109.47402 * 210.00033 * 19 17 15 22 22 H 1.48497 * 109.47153 * 330.00576 * 19 17 15 23 23 C 1.46495 * 119.99986 * 180.02562 * 13 11 10 24 24 C 1.52999 * 109.47054 * 90.00489 * 23 13 11 25 25 O 1.42901 * 109.46880 * 65.00218 * 24 23 13 26 26 C 1.42900 * 113.99893 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.46688 * 299.99496 * 1 2 3 28 28 H 1.08996 * 109.47656 * 59.99278 * 1 2 3 29 29 H 1.08996 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46688 * 240.00504 * 2 1 3 31 31 H 1.09000 * 109.47270 * 120.00092 * 2 1 3 32 32 H 1.08008 * 119.51645 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.33041 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.78587 * 179.71856 * 8 7 6 35 35 H 0.96996 * 119.99368 * 145.80928 * 10 9 8 36 36 H 1.09001 * 109.46910 * 209.99663 * 14 13 11 37 37 H 1.09010 * 109.46748 * 329.99140 * 14 13 11 38 38 H 0.96999 * 120.00040 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.46683 * 210.00371 * 23 13 11 40 40 H 1.08997 * 109.46980 * 330.00195 * 23 13 11 41 41 H 1.08999 * 109.47044 * 184.99805 * 24 23 13 42 42 H 1.08991 * 109.47143 * 305.00142 * 24 23 13 43 43 H 1.08997 * 109.47158 * 59.99370 * 26 25 24 44 44 H 1.09000 * 109.47237 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.46879 * 300.00025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 0.0005 5 7 4.1520 0.4733 0.0005 6 6 5.4658 0.6008 0.0015 7 6 6.0588 1.8476 0.0021 8 6 5.2587 2.9810 0.0075 9 6 3.8789 2.8167 0.0016 10 7 3.0295 3.9317 0.0020 11 6 3.3867 5.0506 0.6630 12 8 4.4782 5.1208 1.1942 13 7 2.5340 6.0919 0.7351 14 6 1.2187 6.0072 0.0953 15 6 0.2193 5.4461 1.0738 16 1 0.5324 5.1796 2.0724 17 6 -1.0947 5.2729 0.6940 18 7 -1.9670 4.7837 1.5480 19 14 -1.6365 5.7345 -1.0331 20 1 -1.4823 4.5613 -1.9304 21 1 -3.0602 6.1557 -1.0093 22 1 -0.7975 6.8533 -1.5326 23 6 2.9224 7.3083 1.4531 24 6 3.6142 8.2719 0.4868 25 8 2.6815 8.7011 -0.5072 26 6 3.2297 9.6087 -1.4652 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 6.0862 -0.2834 0.0019 33 1 7.1349 1.9398 0.0033 34 1 5.6979 3.9677 0.0125 35 1 2.1848 3.8979 -0.4734 36 1 0.9020 7.0023 -0.2172 37 1 1.2798 5.3550 -0.7760 38 1 -2.8916 4.6622 1.2809 39 1 2.0339 7.7849 1.8675 40 1 3.6067 7.0504 2.2612 41 1 3.9818 9.1375 1.0379 42 1 4.4508 7.7655 0.0055 43 1 4.0581 9.1296 -1.9869 44 1 2.4593 9.8871 -2.1843 45 1 3.5897 10.5020 -0.9549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610540812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:48 Heat of formation + Delta-G solvation = -61.094608 kcal Electronic energy + Delta-G solvation = -28545.354667 eV Core-core repulsion = 24564.477813 eV Total energy + Delta-G solvation = -3980.876855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75325 -39.46099 -37.77554 -37.51407 -35.24116 -34.59029 -32.53308 -31.86186 -31.21369 -30.03613 -28.74229 -27.51070 -26.01220 -24.25498 -23.30001 -22.53778 -22.23218 -21.83361 -19.32508 -18.35097 -17.84829 -17.04482 -16.76889 -16.35230 -16.08824 -15.83097 -15.80149 -15.08601 -14.92665 -14.57288 -14.21697 -14.10353 -13.76542 -13.55985 -13.35929 -13.07245 -12.58220 -12.36839 -12.26564 -12.17191 -12.09947 -12.00934 -11.69360 -11.58722 -11.25470 -11.01199 -10.85303 -10.60354 -10.56193 -10.41047 -10.23148 -9.81866 -9.57801 -9.49593 -9.33575 -8.94658 -8.66538 -7.92524 -7.46298 -6.15759 -4.16914 1.34476 1.52769 3.13875 3.21807 3.25851 3.30980 3.33514 3.65555 4.03768 4.12126 4.32183 4.40088 4.62149 5.10299 5.15195 5.21610 5.25271 5.28810 5.29869 5.38596 5.43213 5.54627 5.56726 5.58862 5.61154 5.64338 5.73870 5.89222 5.96561 6.10019 6.14687 6.31354 6.32451 6.39719 6.44923 6.58672 6.80105 7.01450 7.16257 7.35096 7.49031 7.57451 7.63827 8.04074 8.29422 8.54671 8.90228 9.10501 9.43810 10.96879 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.005772 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.854520 B = 4849.661338 C = 7231.931774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.073 3.927 3 O -0.297 6.297 4 C 0.297 3.703 5 N -0.525 5.525 6 C 0.103 3.897 7 C -0.193 4.193 8 C -0.056 4.056 9 C 0.117 3.883 10 N -0.668 5.668 11 C 0.711 3.289 12 O -0.608 6.608 13 N -0.594 5.594 14 C 0.213 3.787 15 C -0.539 4.539 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.890 5.890 19 Si 0.866 3.134 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.140 3.860 24 C 0.046 3.954 25 O -0.380 6.380 26 C 0.032 3.968 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.420 0.580 36 H 0.052 0.948 37 H 0.015 0.985 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.035 0.965 44 H 0.081 0.919 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.698 -2.024 -6.222 13.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.003 4.003 3 O -0.204 6.204 4 C 0.115 3.885 5 N -0.250 5.250 6 C -0.053 4.053 7 C -0.214 4.214 8 C -0.084 4.084 9 C 0.017 3.983 10 N -0.317 5.317 11 C 0.414 3.586 12 O -0.489 6.489 13 N -0.327 5.327 14 C 0.092 3.908 15 C -0.578 4.578 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.692 3.308 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.185 1.185 23 C 0.015 3.985 24 C -0.032 4.032 25 O -0.298 6.298 26 C -0.065 4.065 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.259 0.741 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.365 -2.626 -5.806 13.030 hybrid contribution -0.277 0.846 -1.086 1.404 sum 11.088 -1.781 -6.892 13.176 Atomic orbital electron populations 1.21821 0.92919 1.02299 1.04239 1.22536 0.94883 0.81065 1.01778 1.86359 1.16004 1.30382 1.87624 1.19674 0.84673 0.88520 0.95662 1.67308 1.06625 1.31805 1.19219 1.22215 0.89107 0.97239 0.96701 1.21853 1.01058 0.92704 1.05773 1.21652 0.90624 1.00895 0.95235 1.17604 0.90574 0.84506 1.05573 1.42576 1.23660 1.11153 1.54320 1.15757 0.83918 0.80136 0.78800 1.90786 1.22279 1.82491 1.53379 1.46993 1.16820 1.13134 1.55725 1.19790 0.79723 0.98529 0.92774 1.21393 0.92738 1.43207 1.00453 0.90430 1.24828 0.96362 0.94282 0.96958 1.69896 1.03551 1.44317 1.34960 0.87002 0.78653 0.79759 0.85390 1.19954 1.20943 1.18476 1.21281 1.00843 0.83371 0.92968 1.23103 0.92439 0.97033 0.90629 1.88018 1.37044 1.63711 1.41062 1.22682 0.99135 0.92303 0.92331 0.90913 0.91639 0.90751 0.92140 0.91940 0.82791 0.84736 0.82566 0.74056 0.93022 0.96688 0.92502 0.89061 0.88961 0.92909 0.93226 0.94600 0.90013 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.28 37.16 0.38 -1.80 16 2 C 0.07 1.10 6.03 37.16 0.22 1.32 16 3 O -0.30 -5.56 9.69 -18.97 -0.18 -5.74 16 4 C 0.30 5.39 7.51 -16.95 -0.13 5.26 16 5 N -0.53 -8.42 9.22 -13.18 -0.12 -8.55 16 6 C 0.10 1.35 11.17 -17.54 -0.20 1.16 16 7 C -0.19 -2.52 10.10 -39.46 -0.40 -2.92 16 8 C -0.06 -0.91 8.81 -39.13 -0.34 -1.26 16 9 C 0.12 2.17 6.35 -83.32 -0.53 1.64 16 10 N -0.67 -13.45 5.08 -14.00 -0.07 -13.52 16 11 C 0.71 15.01 8.14 -86.92 -0.71 14.30 16 12 O -0.61 -13.14 13.37 5.28 0.07 -13.07 16 13 N -0.59 -12.38 2.42 -180.80 -0.44 -12.82 16 14 C 0.21 4.85 3.85 -5.19 -0.02 4.83 16 15 C -0.54 -14.47 9.94 -34.44 -0.34 -14.81 16 16 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 19 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 23 C 0.14 2.49 5.81 -4.05 -0.02 2.47 16 24 C 0.05 0.70 6.28 37.16 0.23 0.93 16 25 O -0.38 -6.29 9.53 -35.23 -0.34 -6.63 16 26 C 0.03 0.40 11.01 101.05 1.11 1.51 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.06 0.92 8.11 -51.93 -0.42 0.49 16 32 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.16 2.62 6.27 -52.49 -0.33 2.29 16 35 H 0.42 8.64 6.27 -40.82 -0.26 8.38 16 36 H 0.05 1.20 6.17 -51.93 -0.32 0.88 16 37 H 0.02 0.34 5.73 -51.92 -0.30 0.04 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 40 H 0.09 1.59 7.42 -51.93 -0.39 1.20 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -32.07 376.01 -6.81 -38.88 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.67 Total: 10.83 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: -0.83 Total: 14.72 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.14 Total: -60.17 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.45 Total: -25.43 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.07 -6.81 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.218 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds