Wall clock time and date at job start Tue Mar 31 2020 14:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46949 * 2 1 4 4 C 1.35754 * 116.99807 * 179.97438 * 3 2 1 5 5 N 1.32144 * 119.72293 * 0.02562 * 4 3 2 6 6 C 1.31998 * 121.71208 * 180.02562 * 5 4 3 7 7 C 1.38069 * 120.97513 * 359.97088 * 6 5 4 8 8 C 1.38742 * 119.34360 * 0.28139 * 7 6 5 9 9 C 1.38952 * 118.42557 * 359.50393 * 8 7 6 10 10 N 1.40170 * 120.50539 * 180.22103 * 9 8 7 11 11 C 1.34776 * 119.99982 * 325.81019 * 10 9 8 12 12 O 1.21593 * 120.00248 * 4.22516 * 11 10 9 13 13 N 1.34779 * 119.99895 * 184.21699 * 11 10 9 14 14 C 1.46505 * 119.99893 * 0.02562 * 13 11 10 15 15 C 1.50699 * 109.47458 * 89.99245 * 14 13 11 16 16 H 1.08000 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99956 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00158 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00279 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46840 * 90.00306 * 19 17 15 21 21 H 1.48496 * 109.47402 * 210.00033 * 19 17 15 22 22 H 1.48497 * 109.47153 * 330.00576 * 19 17 15 23 23 C 1.46495 * 119.99986 * 180.02562 * 13 11 10 24 24 C 1.52999 * 109.47054 * 90.00489 * 23 13 11 25 25 O 1.42901 * 109.46880 * 65.00218 * 24 23 13 26 26 C 1.42900 * 113.99893 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.46688 * 299.99496 * 1 2 3 28 28 H 1.08996 * 109.47656 * 59.99278 * 1 2 3 29 29 H 1.08996 * 109.47397 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46688 * 240.00504 * 2 1 3 31 31 H 1.09000 * 109.47270 * 120.00092 * 2 1 3 32 32 H 1.08008 * 119.51645 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.33041 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.78587 * 179.71856 * 8 7 6 35 35 H 0.96996 * 119.99368 * 145.80928 * 10 9 8 36 36 H 1.09001 * 109.46910 * 209.99663 * 14 13 11 37 37 H 1.09010 * 109.46748 * 329.99140 * 14 13 11 38 38 H 0.96999 * 120.00040 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.46683 * 210.00371 * 23 13 11 40 40 H 1.08997 * 109.46980 * 330.00195 * 23 13 11 41 41 H 1.08999 * 109.47044 * 184.99805 * 24 23 13 42 42 H 1.08991 * 109.47143 * 305.00142 * 24 23 13 43 43 H 1.08997 * 109.47158 * 59.99370 * 26 25 24 44 44 H 1.09000 * 109.47237 * 180.02562 * 26 25 24 45 45 H 1.09003 * 109.46879 * 300.00025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 0.0005 5 7 4.1520 0.4733 0.0005 6 6 5.4658 0.6008 0.0015 7 6 6.0588 1.8476 0.0021 8 6 5.2587 2.9810 0.0075 9 6 3.8789 2.8167 0.0016 10 7 3.0295 3.9317 0.0020 11 6 3.3867 5.0506 0.6630 12 8 4.4782 5.1208 1.1942 13 7 2.5340 6.0919 0.7351 14 6 1.2187 6.0072 0.0953 15 6 0.2193 5.4461 1.0738 16 1 0.5324 5.1796 2.0724 17 6 -1.0947 5.2729 0.6940 18 7 -1.9670 4.7837 1.5480 19 14 -1.6365 5.7345 -1.0331 20 1 -1.4823 4.5613 -1.9304 21 1 -3.0602 6.1557 -1.0093 22 1 -0.7975 6.8533 -1.5326 23 6 2.9224 7.3083 1.4531 24 6 3.6142 8.2719 0.4868 25 8 2.6815 8.7011 -0.5072 26 6 3.2297 9.6087 -1.4652 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 6.0862 -0.2834 0.0019 33 1 7.1349 1.9398 0.0033 34 1 5.6979 3.9677 0.0125 35 1 2.1848 3.8979 -0.4734 36 1 0.9020 7.0023 -0.2172 37 1 1.2798 5.3550 -0.7760 38 1 -2.8916 4.6622 1.2809 39 1 2.0339 7.7849 1.8675 40 1 3.6067 7.0504 2.2612 41 1 3.9818 9.1375 1.0379 42 1 4.4508 7.7655 0.0055 43 1 4.0581 9.1296 -1.9869 44 1 2.4593 9.8871 -2.1843 45 1 3.5897 10.5020 -0.9549 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610540812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:47 Heat of formation + Delta-G solvation = -84.316980 kcal Electronic energy + Delta-G solvation = -28546.361665 eV Core-core repulsion = 24564.477813 eV Total energy + Delta-G solvation = -3981.883852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11327 -40.92711 -39.03206 -38.73295 -36.82926 -36.11165 -34.57556 -33.04281 -32.49083 -31.45222 -30.19620 -29.13912 -27.10809 -25.49923 -24.67043 -24.36491 -23.48606 -23.10868 -20.87575 -19.71567 -19.22083 -19.10024 -18.30807 -17.61543 -17.37306 -17.12537 -17.03261 -16.58703 -16.14697 -15.97958 -15.85721 -15.43173 -15.20664 -14.86787 -14.80930 -14.42925 -14.28281 -13.92079 -13.58709 -13.46501 -13.33544 -13.28266 -13.10074 -12.76878 -12.73887 -12.52458 -12.45565 -12.08001 -11.95857 -11.89530 -11.70610 -11.68551 -11.32287 -10.79093 -10.68640 -10.56308 -10.24553 -9.53487 -8.86507 -8.29386 -6.36161 0.13136 0.30215 1.37222 1.39038 1.49874 1.63362 2.03337 2.13162 2.33704 2.85218 2.87874 2.93255 3.05213 3.45374 3.88956 4.07037 4.08446 4.14201 4.16088 4.19884 4.26004 4.40162 4.42207 4.49276 4.54624 4.56195 4.60778 4.64506 4.80073 4.84503 4.90966 4.91440 4.97234 4.98446 5.17804 5.22203 5.37762 5.43224 5.53343 5.68249 5.97364 6.21143 6.31000 6.33150 6.66258 6.83812 6.86097 7.28262 7.49369 8.86997 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.005772 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.854520 B = 4849.661338 C = 7231.931774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 O -0.327 6.327 4 C 0.279 3.721 5 N -0.532 5.532 6 C 0.112 3.888 7 C -0.178 4.178 8 C -0.061 4.061 9 C 0.079 3.921 10 N -0.671 5.671 11 C 0.706 3.294 12 O -0.617 6.617 13 N -0.601 5.601 14 C 0.229 3.771 15 C -0.539 4.539 16 H 0.027 0.973 17 C 0.025 3.975 18 N -0.938 5.938 19 Si 0.935 3.065 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.242 1.242 23 C 0.132 3.868 24 C 0.057 3.943 25 O -0.411 6.411 26 C 0.027 3.973 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.201 0.799 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.413 0.587 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.268 0.732 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.748 -2.318 -8.174 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.004 4.004 3 O -0.235 6.235 4 C 0.098 3.902 5 N -0.256 5.256 6 C -0.044 4.044 7 C -0.198 4.198 8 C -0.089 4.089 9 C -0.019 4.019 10 N -0.319 5.319 11 C 0.409 3.591 12 O -0.500 6.500 13 N -0.333 5.333 14 C 0.107 3.893 15 C -0.577 4.577 16 H 0.045 0.955 17 C -0.175 4.175 18 N -0.577 5.577 19 Si 0.757 3.243 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.165 1.165 23 C 0.009 3.991 24 C -0.020 4.020 25 O -0.331 6.331 26 C -0.069 4.069 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.218 0.782 33 H 0.194 0.806 34 H 0.166 0.834 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.454 -2.921 -7.757 15.802 hybrid contribution -0.775 0.835 -0.387 1.203 sum 12.679 -2.086 -8.144 15.213 Atomic orbital electron populations 1.21835 0.92442 1.04031 1.02433 1.22707 0.95219 0.79976 1.02503 1.86319 1.16895 1.32320 1.87960 1.19767 0.84747 0.88904 0.96791 1.67398 1.07879 1.30963 1.19366 1.23066 0.88386 0.99029 0.93872 1.22284 1.02810 0.91396 1.03301 1.21760 0.90015 1.01866 0.95250 1.17946 0.91424 0.84254 1.08303 1.42541 1.23672 1.11509 1.54215 1.15889 0.83953 0.80396 0.78911 1.90753 1.22539 1.82779 1.53933 1.47052 1.16063 1.14208 1.56010 1.19467 0.79719 0.98186 0.91922 1.21481 0.94021 1.43085 0.99138 0.95480 1.25698 0.96238 0.94020 1.01500 1.70051 1.04090 1.46052 1.37528 0.85904 0.78276 0.80287 0.79803 1.18809 1.20728 1.16486 1.21461 1.00768 0.83015 0.93845 1.22944 0.91448 0.97370 0.90245 1.87952 1.38230 1.64878 1.42017 1.22884 0.99698 0.92364 0.91952 0.93705 0.92297 0.87248 0.90573 0.91824 0.78207 0.80583 0.83383 0.74883 0.92712 0.95747 0.92332 0.89955 0.88835 0.89714 0.93652 0.93897 0.89118 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 10.28 71.98 0.74 -3.52 16 2 C 0.07 2.14 6.03 71.98 0.43 2.57 16 3 O -0.33 -12.64 9.69 -90.80 -0.88 -13.52 16 4 C 0.28 10.18 7.51 84.95 0.64 10.82 16 5 N -0.53 -16.19 9.22 -308.48 -2.84 -19.03 16 6 C 0.11 2.56 11.17 84.63 0.95 3.50 16 7 C -0.18 -4.06 10.10 22.35 0.23 -3.84 16 8 C -0.06 -1.93 8.81 22.56 0.20 -1.73 16 9 C 0.08 2.97 6.35 38.28 0.24 3.22 16 10 N -0.67 -27.95 5.08 -316.46 -1.61 -29.56 16 11 C 0.71 30.62 8.14 179.05 1.46 32.07 16 12 O -0.62 -27.12 13.37 -4.01 -0.05 -27.17 16 13 N -0.60 -25.65 2.42 -844.18 -2.04 -27.70 16 14 C 0.23 10.61 3.85 85.63 0.33 10.94 16 15 C -0.54 -30.14 9.94 25.60 0.25 -29.89 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 17 C 0.02 1.39 5.47 84.65 0.46 1.85 16 18 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 19 Si 0.93 41.89 27.47 68.60 1.88 43.78 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 23 C 0.13 4.79 5.81 86.38 0.50 5.29 16 24 C 0.06 1.69 6.28 71.98 0.45 2.14 16 25 O -0.41 -13.04 9.53 -148.98 -1.42 -14.46 16 26 C 0.03 0.60 11.01 113.37 1.25 1.85 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.03 8.11 -2.39 -0.02 2.01 16 31 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 32 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.15 4.90 6.27 -2.91 -0.02 4.88 16 35 H 0.41 17.73 6.27 -92.71 -0.58 17.15 16 36 H 0.05 2.52 6.17 -2.39 -0.01 2.51 16 37 H 0.02 1.10 5.73 -2.38 -0.01 1.09 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.08 3.07 8.07 -2.39 -0.02 3.05 16 40 H 0.09 3.30 7.42 -2.39 -0.02 3.28 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.27 376.01 1.83 -71.43 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.36 Total: 37.72 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 8.13 Total: 35.28 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -6.19 Total: -133.06 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -2.35 Total: -55.16 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.78 kcal Total: -73.27 1.83 -71.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610540812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.885 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds