Wall clock time and date at job start Tue Mar 31 2020 14:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47261 * 2 1 4 4 C 1.53002 * 109.46953 * 240.00342 * 2 1 3 5 5 C 1.53000 * 109.47129 * 174.99492 * 4 2 1 6 6 F 1.39904 * 109.46875 * 60.00572 * 5 4 2 7 7 F 1.39897 * 109.47000 * 179.97438 * 5 4 2 8 8 F 1.39889 * 109.47657 * 300.00465 * 5 4 2 9 9 N 1.46496 * 109.47144 * 120.00421 * 2 1 3 10 10 C 1.34774 * 120.00211 * 274.99780 * 9 2 1 11 11 O 1.21586 * 119.99704 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00303 * 180.02562 * 10 9 2 13 13 C 1.46493 * 120.00256 * 180.02562 * 12 10 9 14 14 C 1.53349 * 109.42022 * 275.12556 * 13 12 10 15 15 C 1.53196 * 109.15353 * 178.67345 * 14 13 12 16 16 N 1.46928 * 108.89135 * 54.57497 * 15 14 13 17 17 C 1.36936 * 120.63013 * 126.29699 * 16 15 14 18 18 H 1.07999 * 120.00022 * 331.83633 * 17 16 15 19 19 C 1.38813 * 120.00005 * 151.82709 * 17 16 15 20 20 N 1.31618 * 120.00004 * 343.09585 * 19 17 16 21 21 Si 1.86806 * 119.99953 * 163.09475 * 19 17 16 22 22 H 1.48494 * 109.47083 * 60.00061 * 21 19 17 23 23 H 1.48500 * 109.46851 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47024 * 300.00112 * 21 19 17 25 25 C 1.46924 * 118.73859 * 306.32337 * 16 15 14 26 26 C 1.53044 * 109.46300 * 154.99736 * 13 12 10 27 27 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46803 * 299.99402 * 1 2 3 29 29 H 1.08994 * 109.47311 * 59.99462 * 1 2 3 30 30 H 1.09000 * 109.47221 * 295.00320 * 4 2 1 31 31 H 1.09003 * 109.46787 * 55.00125 * 4 2 1 32 32 H 0.97001 * 119.99959 * 95.00595 * 9 2 1 33 33 H 0.97003 * 119.99662 * 359.97438 * 12 10 9 34 34 H 1.09003 * 109.46113 * 35.02623 * 13 12 10 35 35 H 1.08998 * 109.68701 * 58.70834 * 14 13 12 36 36 H 1.09000 * 109.47234 * 298.50902 * 14 13 12 37 37 H 1.08996 * 109.58345 * 294.72319 * 15 14 13 38 38 H 1.08994 * 109.58644 * 174.43734 * 15 14 13 39 39 H 0.96996 * 119.99787 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.58664 * 173.39523 * 25 16 15 41 41 H 1.08996 * 109.58580 * 293.67452 * 25 16 15 42 42 H 1.08992 * 109.49619 * 61.43083 * 26 13 12 43 43 H 1.09005 * 109.49321 * 301.33398 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3139 6 9 4.1227 -1.2031 -0.1745 7 9 4.0311 -1.2731 -2.4559 8 9 3.9349 0.7347 -1.3698 9 7 2.0183 -0.6907 1.1961 10 6 2.1471 -0.0184 2.3571 11 8 1.8584 1.1614 2.4116 12 7 2.5969 -0.6537 3.4574 13 6 2.7363 0.0768 4.7194 14 6 4.0948 0.7876 4.7498 15 6 4.2204 1.5762 6.0571 16 7 3.9888 0.6652 7.1864 17 6 4.9051 0.5618 8.1987 18 1 5.9496 0.7548 8.0034 19 6 4.4915 0.2093 9.4760 20 7 3.2197 0.2972 9.8036 21 14 5.7398 -0.3900 10.7299 22 1 6.7560 0.6677 10.9611 23 1 5.0485 -0.7007 12.0069 24 1 6.4069 -1.6141 10.2181 25 6 2.7556 -0.1333 7.2085 26 6 2.6442 -0.9050 5.8898 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.7516 -1.7714 -1.2058 31 1 1.6053 -0.2615 -2.1370 32 1 2.2491 -1.6318 1.1524 33 1 2.8275 -1.5949 3.4137 34 1 1.9389 0.8155 4.8015 35 1 4.1706 1.4710 3.9040 36 1 4.8933 0.0478 4.6931 37 1 3.4793 2.3752 6.0744 38 1 5.2203 2.0035 6.1315 39 1 2.9307 0.0505 10.6960 40 1 2.7901 -0.8358 8.0411 41 1 1.8953 0.5262 7.3223 42 1 3.4561 -1.6289 5.8221 43 1 1.6874 -1.4261 5.8530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613368361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:45 Heat of formation + Delta-G solvation = -172.088234 kcal Electronic energy + Delta-G solvation = -28535.747964 eV Core-core repulsion = 24008.201324 eV Total energy + Delta-G solvation = -4527.546640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.38245 -47.90208 -47.83200 -40.09069 -37.74485 -36.32125 -34.30632 -32.58072 -31.53515 -30.04851 -29.49583 -28.94481 -25.04228 -24.17311 -22.57790 -22.14002 -21.43530 -20.62105 -19.44816 -18.81456 -18.71650 -18.25439 -17.65060 -16.73991 -16.39834 -15.32415 -15.01669 -14.79954 -14.72953 -14.52136 -14.28462 -14.23698 -13.99927 -13.99655 -13.76992 -13.61353 -13.51810 -13.30529 -13.04323 -12.90626 -12.66373 -12.46208 -12.25569 -11.84838 -11.47299 -11.40851 -11.08510 -10.82664 -10.69523 -10.47279 -10.24488 -10.02623 -9.99559 -9.72452 -9.51734 -9.26472 -8.58932 -8.41350 -6.65738 -5.77481 -3.19468 2.41721 2.68897 3.35239 3.39896 3.45327 3.45560 3.46733 3.57039 3.69816 4.29920 4.36289 4.51481 4.57850 4.80887 4.95459 5.05922 5.33509 5.36812 5.44059 5.53937 5.61169 5.65208 5.90329 5.93478 6.12502 6.32976 6.35034 6.39302 6.52582 6.61375 6.64646 6.84341 6.91347 7.02497 7.12312 7.34784 7.64209 7.81236 8.14200 8.47085 8.75838 9.23172 9.86438 10.43728 11.31506 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.025257 B = 0.002655 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.344879 B =10543.738565 C =11034.497349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.102 0.898 4 C -0.176 4.176 5 C 0.451 3.549 6 F -0.178 7.178 7 F -0.188 7.188 8 F -0.180 7.180 9 N -0.750 5.750 10 C 0.705 3.295 11 O -0.589 6.589 12 N -0.737 5.737 13 C 0.169 3.831 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.395 0.605 33 H 0.391 0.609 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.055 0.945 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.059 0.941 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 -6.193 -24.433 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.053 3.947 3 H 0.120 0.880 4 C -0.215 4.215 5 C 0.397 3.603 6 F -0.159 7.159 7 F -0.169 7.169 8 F -0.162 7.162 9 N -0.408 5.408 10 C 0.405 3.595 11 O -0.466 6.466 12 N -0.390 5.390 13 C 0.065 3.935 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.230 0.770 33 H 0.224 0.776 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.309 -5.095 -24.174 25.269 hybrid contribution 1.103 -1.301 0.514 1.781 sum -4.206 -6.395 -23.660 24.867 Atomic orbital electron populations 1.22159 0.93765 1.02532 1.03451 1.20674 0.95149 0.97588 0.81272 0.88000 1.23298 0.88816 1.06461 1.02879 1.20537 0.92367 0.73879 0.73494 1.93201 1.87668 1.83956 1.51100 1.93192 1.90891 1.81186 1.51643 1.93210 1.93267 1.33655 1.96035 1.45280 1.72841 1.13675 1.09021 1.15947 0.78174 0.85125 0.80213 1.90922 1.57182 1.14178 1.84365 1.45536 1.70158 1.13619 1.09710 1.20975 0.98198 0.94054 0.80244 1.22445 0.96486 0.99703 0.99348 1.20875 0.98932 0.91601 0.86534 1.44084 1.21570 1.44188 1.21717 1.19159 0.88653 1.42996 0.87371 0.91707 1.25050 0.96098 1.01805 0.96709 1.70016 1.14339 1.50823 1.19653 0.86362 0.80714 0.79045 0.80605 1.20887 1.21655 1.21071 1.20734 0.87926 0.93821 0.92691 1.22538 1.00340 0.98435 0.97265 0.92187 0.90830 0.91389 0.86708 0.85703 0.77042 0.77614 0.90076 0.92663 0.92483 0.96172 0.92651 0.93572 0.89091 0.96084 0.92243 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 2 C 0.16 1.31 2.51 -67.93 -0.17 1.14 16 3 H 0.10 1.09 7.10 -51.93 -0.37 0.72 16 4 C -0.18 -0.89 4.88 -26.73 -0.13 -1.02 16 5 C 0.45 3.72 3.16 37.16 0.12 3.84 16 6 F -0.18 -1.75 15.18 2.25 0.03 -1.72 16 7 F -0.19 -1.58 17.32 2.25 0.04 -1.55 16 8 F -0.18 -1.88 16.71 2.25 0.04 -1.84 16 9 N -0.75 -7.43 3.81 -58.68 -0.22 -7.65 16 10 C 0.71 10.28 8.49 -86.92 -0.74 9.54 16 11 O -0.59 -11.02 15.67 5.29 0.08 -10.94 16 12 N -0.74 -10.45 5.08 -58.48 -0.30 -10.75 16 13 C 0.17 2.99 2.42 -67.73 -0.16 2.83 16 14 C -0.14 -2.64 5.68 -26.45 -0.15 -2.79 16 15 C 0.15 3.25 6.51 -3.71 -0.02 3.23 16 16 N -0.59 -14.99 2.99 -172.32 -0.52 -15.50 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 18 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.18 11.20 55.49 0.62 -25.56 16 21 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 26 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 2.94 7.87 -40.82 -0.32 2.61 16 33 H 0.39 4.46 8.62 -40.82 -0.35 4.10 16 34 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 1.20 7.93 -51.93 -0.41 0.78 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -32.90 358.27 -7.52 -40.42 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.36 Total: 2.95 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.31 Total: 10.11 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.42 Total: -59.46 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.90 -7.52 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613368361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.671 kcal (2) G-P(sol) polarization free energy of solvation -32.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds