Wall clock time and date at job start Tue Mar 31 2020 14:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47340 * 2 1 4 4 C 1.53010 * 109.46456 * 119.99664 * 2 1 3 5 5 C 1.53004 * 109.46799 * 185.00098 * 4 2 1 6 6 F 1.39907 * 109.47061 * 59.99838 * 5 4 2 7 7 F 1.39898 * 109.47047 * 180.02562 * 5 4 2 8 8 F 1.39906 * 109.47095 * 300.00345 * 5 4 2 9 9 N 1.46500 * 109.47276 * 239.99244 * 2 1 3 10 10 C 1.34772 * 119.99470 * 85.00502 * 9 2 1 11 11 O 1.21589 * 120.00398 * 0.02562 * 10 9 2 12 12 N 1.34778 * 120.00095 * 179.97438 * 10 9 2 13 13 C 1.46495 * 120.00378 * 180.02562 * 12 10 9 14 14 C 1.53045 * 109.45951 * 275.02385 * 13 12 10 15 15 C 1.53189 * 109.31372 * 178.60158 * 14 13 12 16 16 N 1.46921 * 108.76872 * 54.65907 * 15 14 13 17 17 C 1.36927 * 120.63380 * 126.36281 * 16 15 14 18 18 H 1.08003 * 119.99648 * 208.02296 * 17 16 15 19 19 C 1.38814 * 120.00182 * 28.02176 * 17 16 15 20 20 N 1.31613 * 119.99814 * 17.51981 * 19 17 16 21 21 Si 1.86800 * 119.99791 * 197.52645 * 19 17 16 22 22 H 1.48507 * 109.46902 * 94.06607 * 21 19 17 23 23 H 1.48497 * 109.47098 * 214.06262 * 21 19 17 24 24 H 1.48494 * 109.47340 * 334.06655 * 21 19 17 25 25 C 1.46935 * 118.73426 * 306.38239 * 16 15 14 26 26 C 1.53042 * 109.46491 * 154.97215 * 13 12 10 27 27 H 1.09003 * 109.46181 * 60.00387 * 1 2 3 28 28 H 1.08997 * 109.47340 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47126 * 300.00753 * 1 2 3 30 30 H 1.08998 * 109.47220 * 304.99580 * 4 2 1 31 31 H 1.08991 * 109.47013 * 65.00355 * 4 2 1 32 32 H 0.96997 * 120.00157 * 264.99909 * 9 2 1 33 33 H 0.97006 * 119.99942 * 359.97438 * 12 10 9 34 34 H 1.09002 * 109.46332 * 34.99607 * 13 12 10 35 35 H 1.09007 * 109.49611 * 298.56904 * 14 13 12 36 36 H 1.09006 * 109.49267 * 58.66286 * 14 13 12 37 37 H 1.09004 * 109.59528 * 294.86535 * 15 14 13 38 38 H 1.09000 * 109.69995 * 174.51077 * 15 14 13 39 39 H 0.97001 * 119.99897 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.58728 * 293.82244 * 25 16 15 41 41 H 1.08995 * 109.70187 * 173.46748 * 25 16 15 42 42 H 1.09002 * 109.49554 * 301.34034 * 26 13 12 43 43 H 1.09003 * 109.49556 * 61.42887 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5648 -0.6133 1.3140 6 9 3.9349 0.7348 1.3699 7 9 4.0310 -1.2732 2.4560 8 9 4.1227 -1.2031 0.1746 9 7 2.0184 -0.6908 -1.1961 10 6 2.1472 -0.0185 -2.3570 11 8 1.8585 1.1614 -2.4116 12 7 2.5970 -0.6537 -3.4573 13 6 2.7375 0.0772 -4.7191 14 6 1.3948 0.0896 -5.4534 15 6 1.5366 0.8843 -6.7554 16 7 2.6456 0.3189 -7.5358 17 6 2.4574 -0.0690 -8.8355 18 1 3.0651 -0.8559 -9.2574 19 6 1.4858 0.5490 -9.6106 20 7 0.9885 1.7099 -9.2401 21 14 0.8841 -0.2670 -11.1795 22 1 -0.3336 -1.0651 -10.8868 23 1 0.5624 0.7750 -12.1875 24 1 1.9449 -1.1596 -11.7115 25 6 3.9602 0.1772 -6.8951 26 6 3.7911 -0.6092 -5.5914 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6053 -0.2616 2.1371 31 1 1.7516 -1.7714 1.2058 32 1 2.2491 -1.6319 -1.1524 33 1 2.8283 -1.5947 -3.4135 34 1 3.0481 1.1015 -4.5129 35 1 1.0957 -0.9334 -5.6820 36 1 0.6393 0.5576 -4.8222 37 1 1.7470 1.9287 -6.5250 38 1 0.6130 0.8158 -7.3301 39 1 0.3098 2.1419 -9.7819 40 1 4.3683 1.1640 -6.6762 41 1 4.6373 -0.3588 -7.5601 42 1 4.7415 -0.6389 -5.0584 43 1 3.4692 -1.6255 -5.8188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613368363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:48 Heat of formation + Delta-G solvation = -194.276298 kcal Electronic energy + Delta-G solvation = -28500.647841 eV Core-core repulsion = 23972.139055 eV Total energy + Delta-G solvation = -4528.508786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.04883 -48.56508 -48.53430 -41.24917 -39.24376 -37.34948 -35.88978 -34.07943 -32.83858 -31.64942 -30.92836 -29.85159 -26.89288 -24.91516 -23.95195 -23.84867 -22.46122 -21.74585 -21.06189 -19.62085 -19.45121 -19.21701 -18.71627 -18.27595 -17.50705 -16.84322 -16.26940 -16.06834 -15.69826 -15.45681 -15.38022 -15.34665 -15.15604 -14.95784 -14.78541 -14.69862 -14.69394 -14.41957 -14.34679 -14.02582 -13.84858 -13.42859 -13.19556 -13.06222 -12.99936 -12.63461 -12.60709 -12.47007 -12.11064 -12.07963 -12.00801 -11.85473 -11.52436 -11.41749 -11.16196 -10.58057 -10.31393 -9.74781 -8.71444 -7.86815 -5.33120 1.48198 1.49342 1.59078 1.68934 1.84568 2.21091 2.52265 2.86445 2.97556 3.11119 3.26774 3.34485 3.67782 3.77623 3.89802 4.07532 4.11377 4.26492 4.35716 4.47747 4.48971 4.61979 4.68221 4.77189 4.81396 4.86676 4.97910 5.07723 5.09839 5.14579 5.31927 5.32639 5.45952 5.53396 5.63340 5.65010 5.70361 6.04916 6.39074 7.13552 7.15748 7.65505 7.84710 8.37869 9.20353 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.029482 B = 0.002581 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.494860 B =10847.991801 C =11275.872103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.154 3.846 3 H 0.073 0.927 4 C -0.159 4.159 5 C 0.444 3.556 6 F -0.198 7.198 7 F -0.188 7.188 8 F -0.189 7.189 9 N -0.731 5.731 10 C 0.701 3.299 11 O -0.635 6.635 12 N -0.726 5.726 13 C 0.181 3.819 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.074 0.926 19 C -0.055 4.055 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.286 1.286 23 H -0.298 1.298 24 H -0.264 1.264 25 C 0.141 3.859 26 C -0.121 4.121 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.044 0.956 37 H -0.013 1.013 38 H 0.054 0.946 39 H 0.249 0.751 40 H 0.010 0.990 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -11.231 25.777 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.091 0.909 4 C -0.197 4.197 5 C 0.391 3.609 6 F -0.180 7.180 7 F -0.169 7.169 8 F -0.170 7.170 9 N -0.389 5.389 10 C 0.401 3.599 11 O -0.516 6.516 12 N -0.381 5.381 13 C 0.076 3.924 14 C -0.168 4.168 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.092 0.908 19 C -0.250 4.250 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.188 1.188 25 C 0.016 3.984 26 C -0.160 4.160 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.249 0.751 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.005 0.995 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.028 0.972 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.954 -10.080 25.652 27.630 hybrid contribution 0.021 -0.365 -1.104 1.163 sum 1.975 -10.446 24.547 26.750 Atomic orbital electron populations 1.22102 0.92759 1.03665 1.02812 1.20794 0.95913 0.96588 0.81833 0.90925 1.23323 0.86169 1.08293 1.01932 1.21041 0.93869 0.72962 0.73072 1.93184 1.93593 1.35100 1.96088 1.93191 1.91080 1.81062 1.51581 1.93168 1.88092 1.84043 1.51745 1.45135 1.71541 1.14257 1.08004 1.16146 0.77946 0.84668 0.81178 1.90915 1.58678 1.16673 1.85377 1.45098 1.70408 1.14287 1.08260 1.20479 0.95078 0.95247 0.81639 1.22298 0.97214 1.00576 0.96731 1.20462 0.92204 0.92076 0.89611 1.44360 1.05509 1.73662 1.09758 1.19588 1.18343 1.12854 0.88356 0.90823 1.25885 1.02159 0.95771 1.01192 1.70219 1.31567 1.15621 1.41055 0.85210 0.78529 0.77441 0.79010 1.21309 1.22473 1.18805 1.21035 0.87350 0.96733 0.93327 1.22130 0.98249 0.99967 0.95667 0.94548 0.90099 0.89045 0.82786 0.83458 0.75110 0.75381 0.92920 0.92023 0.93750 0.99467 0.92709 0.94185 0.97209 0.91350 0.89334 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 71.98 0.68 -1.37 16 2 C 0.15 2.32 2.51 45.00 0.11 2.43 16 3 H 0.07 1.57 7.10 -2.39 -0.02 1.56 16 4 C -0.16 -1.08 4.88 30.60 0.15 -0.93 16 5 C 0.44 6.17 3.16 71.98 0.23 6.40 16 6 F -0.20 -3.88 16.71 44.97 0.75 -3.12 16 7 F -0.19 -2.63 17.32 44.97 0.78 -1.85 16 8 F -0.19 -3.16 15.18 44.97 0.68 -2.48 16 9 N -0.73 -13.28 3.81 -457.80 -1.75 -15.03 16 10 C 0.70 20.25 8.50 179.06 1.52 21.77 16 11 O -0.64 -25.06 15.67 -4.00 -0.06 -25.13 16 12 N -0.73 -19.32 5.08 -457.68 -2.33 -21.65 16 13 C 0.18 6.30 2.42 45.02 0.11 6.41 16 14 C -0.13 -5.22 5.65 30.67 0.17 -5.05 16 15 C 0.18 9.40 5.31 86.36 0.46 9.86 16 16 N -0.61 -31.07 2.99 -699.10 -2.09 -33.17 16 17 C -0.26 -14.39 9.58 84.04 0.81 -13.59 16 18 H 0.07 3.87 7.89 -2.91 -0.02 3.85 16 19 C -0.05 -3.11 4.90 84.86 0.42 -2.70 16 20 N -0.94 -57.26 11.22 21.65 0.24 -57.02 16 21 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.14 5.79 6.51 86.36 0.56 6.35 16 26 C -0.12 -3.79 5.55 30.67 0.17 -3.62 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.41 4.80 7.87 -92.71 -0.73 4.07 16 33 H 0.41 7.79 8.62 -92.70 -0.80 6.99 16 34 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 35 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 37 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.05 3.16 6.06 -2.39 -0.01 3.14 16 39 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.07 2.64 7.94 -2.39 -0.02 2.62 16 42 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.73 358.27 3.16 -73.56 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.48 Total: 12.72 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 5.39 Total: 25.97 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -5.92 Total: -126.86 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 9 Polarization: -9.67 SS G_CDS: 2.21 Total: -7.45 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.73 3.16 -73.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613368363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.716 kcal (2) G-P(sol) polarization free energy of solvation -76.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds