Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47571 * 2 1 4 4 C 1.35346 * 117.00320 * 180.02562 * 3 2 1 5 5 N 1.30550 * 125.45102 * 180.02562 * 4 3 2 6 6 C 1.36321 * 108.38854 * 179.97438 * 5 4 3 7 7 C 1.47370 * 126.41554 * 180.02562 * 6 5 4 8 8 O 1.21622 * 119.99993 * 179.97438 * 7 6 5 9 9 N 1.34772 * 119.99733 * 359.97438 * 7 6 5 10 10 C 1.46499 * 120.00010 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47440 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.49709 * 54.99284 * 11 10 9 13 13 C 1.53037 * 109.49993 * 175.06388 * 11 10 9 14 14 C 1.53042 * 109.54136 * 181.31229 * 13 11 10 15 15 C 1.53196 * 109.31096 * 298.64034 * 14 13 11 16 16 N 1.46920 * 108.77710 * 54.62782 * 15 14 13 17 17 C 1.36939 * 120.62671 * 126.39285 * 16 15 14 18 18 H 1.07998 * 120.00217 * 207.67589 * 17 16 15 19 19 C 1.38812 * 120.00109 * 27.67463 * 17 16 15 20 20 N 1.31620 * 120.00054 * 17.37026 * 19 17 16 21 21 Si 1.86800 * 120.00129 * 197.36869 * 19 17 16 22 22 H 1.48500 * 109.47002 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47122 * 119.99739 * 21 19 17 24 24 H 1.48496 * 109.47267 * 240.00039 * 21 19 17 25 25 C 1.46927 * 118.76815 * 306.41351 * 16 15 14 26 26 C 1.35920 * 107.17359 * 359.97438 * 6 5 4 27 27 O 1.34204 * 125.44476 * 359.69077 * 4 3 2 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46666 * 59.99909 * 1 2 3 30 30 H 1.08999 * 109.46769 * 300.00055 * 1 2 3 31 31 H 1.08996 * 109.47058 * 120.00459 * 2 1 3 32 32 H 1.09008 * 109.46979 * 239.99912 * 2 1 3 33 33 H 0.96999 * 120.00622 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46893 * 299.99984 * 10 9 7 35 35 H 1.08999 * 109.47328 * 59.99463 * 10 9 7 36 36 H 1.08997 * 109.45993 * 301.33686 * 13 11 10 37 37 H 1.09006 * 109.46176 * 61.30850 * 13 11 10 38 38 H 1.09000 * 109.49250 * 58.58653 * 14 13 11 39 39 H 1.08997 * 109.49811 * 178.68381 * 14 13 11 40 40 H 1.08999 * 109.58272 * 174.42130 * 15 14 13 41 41 H 1.09005 * 109.58116 * 294.69802 * 15 14 13 42 42 H 0.96997 * 120.00017 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.56050 * 293.78450 * 25 16 15 44 44 H 1.08998 * 109.61486 * 173.36191 * 25 16 15 45 45 H 1.08002 * 126.45583 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3483 1.5245 -0.0005 5 7 3.9596 2.6780 -0.0001 6 6 5.3040 2.4522 -0.0004 7 6 6.3632 3.4769 0.0005 8 8 7.5326 3.1426 0.0007 9 7 6.0360 4.7843 0.0010 10 6 7.0889 5.8029 0.0024 11 6 6.4525 7.1943 0.0035 12 1 5.7648 7.2791 0.8448 13 6 7.5470 8.2565 0.1290 14 6 6.9091 9.6472 0.1631 15 6 6.1492 9.8882 -1.1451 16 7 5.1934 8.7906 -1.3459 17 6 3.8672 9.0517 -1.5655 18 1 3.1193 8.3280 -1.2771 19 6 3.4841 10.2468 -2.1588 20 7 4.3679 10.9692 -2.8140 21 14 1.7142 10.8296 -2.0273 22 1 0.9257 9.8447 -1.2441 23 1 1.6766 12.1479 -1.3449 24 1 1.1336 10.9597 -3.3878 25 6 5.6868 7.4072 -1.3062 26 6 5.4847 1.1051 -0.0003 27 8 4.2631 0.5426 0.0048 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 5.1033 5.0509 0.0005 34 1 7.7066 5.6856 0.8928 35 1 7.7080 5.6867 -0.8871 36 1 8.1088 8.0920 1.0485 37 1 8.2204 8.1869 -0.7253 38 1 6.2168 9.7094 1.0027 39 1 7.6875 10.4018 0.2760 40 1 5.6117 10.8347 -1.0864 41 1 6.8535 9.9189 -1.9764 42 1 4.1001 11.8041 -3.2289 43 1 6.3527 7.2328 -2.1513 44 1 4.8446 6.7168 -1.3535 45 1 6.4309 0.5845 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614266486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = -58.516006 kcal Electronic energy + Delta-G solvation = -27134.459197 eV Core-core repulsion = 23153.694159 eV Total energy + Delta-G solvation = -3980.765038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.55817 -40.79854 -39.96564 -39.30391 -36.31096 -36.07531 -34.64438 -32.89960 -32.29811 -31.93034 -30.59684 -27.41734 -27.12745 -25.08870 -24.47405 -23.81659 -23.35677 -22.38295 -21.63217 -20.76222 -20.00945 -18.70203 -18.65974 -18.32152 -17.41205 -16.96975 -16.82602 -16.68488 -16.35558 -16.06752 -15.74756 -15.40299 -15.06880 -14.97093 -14.50565 -14.49540 -14.00277 -13.93600 -13.74438 -13.62021 -13.57345 -13.01256 -12.89559 -12.68114 -12.55515 -12.51712 -12.24303 -11.95340 -11.90973 -11.82066 -11.79406 -11.59805 -11.50372 -11.17266 -11.07235 -10.53715 -10.17941 -9.75022 -8.67579 -7.86942 -5.32043 0.01311 0.82640 0.89157 1.45555 1.47358 1.58362 1.66530 2.09827 2.17807 2.51254 3.27256 3.31569 3.60073 3.71867 3.92284 3.94845 3.98854 4.02014 4.05006 4.10854 4.25731 4.38323 4.42881 4.57757 4.59654 4.66645 4.76585 4.82901 4.85854 4.88970 4.91191 5.02028 5.12328 5.17920 5.21650 5.33540 5.37673 5.45539 5.57908 5.63221 5.67753 5.80067 6.27762 6.39678 6.55091 7.02634 7.15704 7.86996 8.38154 9.19279 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.003170 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.387373 B = 8829.531514 C =11186.112491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.260 6.260 4 C 0.385 3.615 5 N -0.488 5.488 6 C -0.080 4.080 7 C 0.603 3.397 8 O -0.562 6.562 9 N -0.705 5.705 10 C 0.136 3.864 11 C -0.102 4.102 12 H 0.072 0.928 13 C -0.095 4.095 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.292 1.292 25 C 0.153 3.847 26 C 0.032 3.968 27 O -0.214 6.214 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.412 0.588 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.051 0.949 41 H -0.005 1.005 42 H 0.250 0.750 43 H 0.009 0.991 44 H 0.047 0.953 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -24.208 8.908 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.168 6.168 4 C 0.138 3.862 5 N -0.235 5.235 6 C -0.197 4.197 7 C 0.389 3.611 8 O -0.443 6.443 9 N -0.355 5.355 10 C 0.012 3.988 11 C -0.122 4.122 12 H 0.091 0.909 13 C -0.133 4.133 14 C -0.170 4.170 15 C 0.047 3.953 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.083 0.917 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.215 1.215 24 H -0.219 1.219 25 C 0.027 3.973 26 C -0.040 4.040 27 O -0.105 6.105 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.013 0.987 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -0.449 -23.630 8.825 25.228 hybrid contribution -1.136 0.206 -0.498 1.257 sum -1.584 -23.424 8.327 24.911 Atomic orbital electron populations 1.21871 0.90024 1.05089 1.03743 1.23447 0.97819 0.77697 1.04256 1.86437 1.08048 1.33429 1.88923 1.23288 0.84168 0.81421 0.97339 1.71050 1.04643 1.23069 1.24731 1.21589 0.89802 0.94907 1.13445 1.16791 0.86193 0.81971 0.76120 1.90796 1.18737 1.81873 1.52849 1.45943 1.11751 1.05180 1.72595 1.21426 0.89378 0.85299 1.02655 1.21725 0.98122 0.93267 0.99108 0.90923 1.21334 0.96376 0.93271 1.02340 1.22006 0.99135 0.97464 0.98346 1.20652 0.90189 0.91853 0.92651 1.44310 1.04871 1.01001 1.83078 1.19545 0.83939 1.03310 1.32379 0.91734 1.25773 1.01245 1.00114 0.97498 1.70201 1.35252 1.15694 1.36972 0.85239 0.80407 0.77978 0.77045 1.19172 1.21497 1.21944 1.21006 0.95851 0.86115 0.94337 1.25630 0.86653 0.91923 0.99814 1.84430 1.16036 1.38498 1.71534 0.86848 0.91622 0.91401 0.89392 0.89632 0.75212 0.89882 0.91542 0.89765 0.92265 0.93000 0.90967 0.93007 0.98737 0.94137 0.97354 0.93411 0.71248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 71.98 0.74 -0.40 16 2 C 0.04 0.45 6.38 71.98 0.46 0.91 16 3 O -0.26 -5.33 10.19 -64.14 -0.65 -5.98 16 4 C 0.38 8.95 8.98 130.43 1.17 10.12 16 5 N -0.49 -13.88 11.10 -419.40 -4.65 -18.54 16 6 C -0.08 -2.06 6.99 40.31 0.28 -1.78 16 7 C 0.60 17.67 7.81 86.65 0.68 18.34 16 8 O -0.56 -18.10 16.89 -4.10 -0.07 -18.17 16 9 N -0.71 -20.75 5.33 -466.42 -2.48 -23.23 16 10 C 0.14 3.88 5.07 86.38 0.44 4.32 16 11 C -0.10 -3.34 2.37 -10.72 -0.03 -3.36 16 12 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 13 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 14 C -0.13 -4.83 6.08 30.67 0.19 -4.64 16 15 C 0.17 8.45 5.31 86.36 0.46 8.91 16 16 N -0.61 -31.29 3.00 -699.09 -2.09 -33.38 16 17 C -0.26 -14.77 9.58 84.03 0.81 -13.96 16 18 H 0.06 3.59 7.89 -2.91 -0.02 3.56 16 19 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 20 N -0.93 -56.48 11.19 21.65 0.24 -56.24 16 21 Si 0.97 45.90 29.59 68.60 2.03 47.93 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 C 0.15 6.44 5.60 86.36 0.48 6.93 16 26 C 0.03 0.59 11.93 67.28 0.80 1.39 16 27 O -0.21 -3.89 10.20 18.86 0.19 -3.70 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.41 12.54 7.43 -92.71 -0.69 11.85 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 2.89 6.04 -2.39 -0.01 2.87 16 41 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.05 2.02 7.14 -2.39 -0.02 2.00 16 45 H 0.27 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -73.06 374.10 -0.13 -73.18 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.31 Total: 16.68 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 7.05 Total: 21.47 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -8.99 Total: -131.40 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.53 Total: -27.85 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.06 -0.13 -73.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614266486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.665 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds