Wall clock time and date at job start Tue Mar 31 2020 14:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47249 * 2 1 4 4 C 1.35361 * 117.00015 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44353 * 180.30036 * 4 3 2 6 6 C 1.36328 * 108.38014 * 180.16371 * 5 4 3 7 7 C 1.47368 * 126.41338 * 179.82710 * 6 5 4 8 8 O 1.21627 * 120.00014 * 179.68457 * 7 6 5 9 9 N 1.34774 * 120.00167 * 359.68197 * 7 6 5 10 10 C 1.46499 * 120.00141 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47178 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.49379 * 305.06458 * 11 10 9 13 13 C 1.53038 * 109.50110 * 185.00202 * 11 10 9 14 14 C 1.53036 * 109.54003 * 178.68265 * 13 11 10 15 15 C 1.53192 * 109.31293 * 61.36202 * 14 13 11 16 16 N 1.46924 * 108.77591 * 305.36430 * 15 14 13 17 17 C 1.36939 * 120.62993 * 233.58522 * 16 15 14 18 18 H 1.08002 * 119.99754 * 151.83452 * 17 16 15 19 19 C 1.38804 * 119.99958 * 331.83412 * 17 16 15 20 20 N 1.31622 * 120.00247 * 343.08098 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 163.08052 * 19 17 16 22 22 H 1.48493 * 109.47005 * 90.00021 * 21 19 17 23 23 H 1.48501 * 109.47040 * 209.99959 * 21 19 17 24 24 H 1.48500 * 109.46752 * 329.99813 * 21 19 17 25 25 C 1.46920 * 118.73855 * 53.86375 * 16 15 14 26 26 C 1.35921 * 107.17629 * 359.55884 * 6 5 4 27 27 O 1.34200 * 125.44485 * 359.97104 * 4 3 2 28 28 H 1.09003 * 109.46876 * 299.99560 * 1 2 3 29 29 H 1.08990 * 109.47335 * 60.00081 * 1 2 3 30 30 H 1.09003 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47174 * 239.99533 * 2 1 3 32 32 H 1.09007 * 109.47290 * 120.00197 * 2 1 3 33 33 H 0.97003 * 119.99813 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47340 * 60.00547 * 10 9 7 35 35 H 1.09003 * 109.47133 * 299.99741 * 10 9 7 36 36 H 1.08998 * 109.46122 * 58.65861 * 13 11 10 37 37 H 1.09004 * 109.44451 * 298.69553 * 13 11 10 38 38 H 1.08996 * 109.49733 * 301.41024 * 14 13 11 39 39 H 1.09005 * 109.52294 * 181.33131 * 14 13 11 40 40 H 1.09001 * 109.58625 * 185.57745 * 15 14 13 41 41 H 1.08997 * 109.70196 * 65.22177 * 15 14 13 42 42 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58855 * 65.92358 * 25 16 15 44 44 H 1.08998 * 109.58990 * 186.35233 * 25 16 15 45 45 H 1.07997 * 126.45912 * 180.23393 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5245 -0.0005 5 7 3.9594 2.6781 0.0050 6 6 5.3039 2.4523 -0.0014 7 6 6.3630 3.4769 -0.0020 8 8 7.5325 3.1427 -0.0023 9 7 6.0358 4.7844 -0.0023 10 6 7.0887 5.8030 -0.0034 11 6 6.4523 7.1944 -0.0029 12 1 5.7633 7.2796 -0.8433 13 6 7.5465 8.2567 -0.1299 14 6 6.9085 9.6474 -0.1624 15 6 6.1507 9.8879 1.1470 16 7 5.1952 8.7902 1.3489 17 6 3.8694 9.0513 1.5711 18 1 3.1204 8.3311 1.2764 19 6 3.4882 10.2415 2.1751 20 7 4.3751 10.9613 2.8290 21 14 1.7162 10.8217 2.0599 22 1 0.9428 10.2808 3.2063 23 1 1.6782 12.3059 2.0933 24 1 1.1193 10.3397 0.7885 25 6 5.6902 7.4074 1.3139 26 6 5.4846 1.1051 -0.0011 27 8 4.2630 0.5426 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.1031 5.0509 -0.0017 34 1 7.7065 5.6861 -0.8938 35 1 7.7078 5.6867 0.8862 36 1 8.1070 8.0927 -1.0502 37 1 8.2212 8.1866 0.7235 38 1 6.2150 9.7099 -1.0009 39 1 7.6864 10.4025 -0.2766 40 1 5.6131 10.8344 1.0895 41 1 6.8544 9.9174 1.9788 42 1 4.1086 11.7929 3.2514 43 1 6.3587 7.2371 2.1578 44 1 4.8487 6.7166 1.3665 45 1 6.4308 0.5846 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614266487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:14 Heat of formation + Delta-G solvation = -33.306827 kcal Electronic energy + Delta-G solvation = -27131.303468 eV Core-core repulsion = 23151.631582 eV Total energy + Delta-G solvation = -3979.671886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.68024 -39.64703 -39.17505 -37.71414 -35.17770 -34.78284 -32.93034 -32.36418 -30.45061 -30.36360 -29.67201 -26.02033 -25.22941 -24.25828 -23.61345 -22.51652 -22.00744 -20.93648 -20.55244 -19.40539 -18.85021 -17.85022 -17.39302 -16.72009 -16.50146 -15.97901 -15.74376 -15.27999 -15.20245 -14.76788 -14.16236 -14.02039 -13.68131 -13.50450 -13.38232 -13.35215 -13.21332 -12.73707 -12.30937 -12.24960 -12.22986 -12.13113 -11.76565 -11.24767 -11.13114 -10.98384 -10.96491 -10.66528 -10.45247 -10.29197 -10.17875 -10.12297 -9.86493 -9.54077 -9.37412 -9.04552 -8.80760 -8.41938 -6.61929 -5.74693 -3.17348 0.90191 1.61799 1.86457 2.43396 3.17369 3.25904 3.40665 3.47425 3.50431 4.27935 4.31554 4.32839 4.52781 4.62979 4.64705 4.85913 5.14103 5.17642 5.24104 5.25475 5.34088 5.47908 5.51525 5.52824 5.58017 5.66930 5.86156 5.97116 6.03953 6.28431 6.35732 6.38266 6.41110 6.51554 6.65164 6.74116 6.83100 6.90178 7.01597 7.24871 7.44167 7.63667 7.71803 7.84298 8.18792 8.49502 9.25776 9.89080 10.45981 11.33662 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.003171 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.537218 B = 8828.130526 C =11185.331949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.243 6.243 4 C 0.384 3.616 5 N -0.452 5.452 6 C -0.043 4.043 7 C 0.600 3.400 8 O -0.542 6.542 9 N -0.701 5.701 10 C 0.126 3.874 11 C -0.118 4.118 12 H 0.075 0.925 13 C -0.099 4.099 14 C -0.141 4.141 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.153 3.847 26 C -0.002 4.002 27 O -0.227 6.227 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.414 0.586 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.017 0.983 42 H 0.253 0.747 43 H 0.019 0.981 44 H 0.052 0.948 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -21.924 -7.543 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.138 3.862 5 N -0.197 5.197 6 C -0.162 4.162 7 C 0.385 3.615 8 O -0.420 6.420 9 N -0.351 5.351 10 C 0.002 3.998 11 C -0.139 4.139 12 H 0.093 0.907 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.026 3.974 26 C -0.074 4.074 27 O -0.119 6.119 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.617 -21.303 -7.433 22.571 hybrid contribution -1.066 -0.389 0.048 1.136 sum -1.682 -21.692 -7.386 22.976 Atomic orbital electron populations 1.21816 0.91175 1.03608 1.04409 1.23058 0.96944 0.79372 1.02966 1.86420 1.08863 1.30746 1.89121 1.23310 0.83499 0.81511 0.97906 1.71174 1.03849 1.21445 1.23249 1.21749 0.90296 0.94060 1.10091 1.16637 0.86032 0.81890 0.76931 1.90820 1.17935 1.81593 1.51693 1.45925 1.11937 1.04882 1.72400 1.21563 0.89550 0.86655 1.01997 1.22046 0.98347 0.91589 1.01926 0.90703 1.21337 0.96613 0.95381 1.00381 1.22166 0.99097 0.94984 1.01814 1.20792 0.90848 0.93376 0.90674 1.44047 1.05279 0.99242 1.82758 1.19184 0.82554 1.03664 1.32747 0.91676 1.25040 0.97427 0.99865 0.97295 1.70040 1.33359 1.15790 1.35567 0.86321 0.84883 0.77767 0.77967 1.21420 1.21609 1.20446 1.21001 0.95777 0.88330 0.92293 1.24937 0.85822 0.92864 1.03801 1.84384 1.16246 1.39241 1.71984 0.90817 0.90890 0.89476 0.90844 0.90796 0.74961 0.91618 0.91216 0.93421 0.92451 0.92736 0.93200 0.89604 0.96457 0.93694 0.96315 0.92930 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.28 37.16 0.38 -0.32 16 2 C 0.05 0.32 6.38 37.16 0.24 0.56 16 3 O -0.24 -2.59 10.19 -41.00 -0.42 -3.01 16 4 C 0.38 4.66 8.98 52.22 0.47 5.13 16 5 N -0.45 -6.50 11.10 -11.71 -0.13 -6.63 16 6 C -0.04 -0.58 6.99 -82.98 -0.58 -1.16 16 7 C 0.60 9.09 7.81 -12.55 -0.10 8.99 16 8 O -0.54 -9.13 16.89 5.25 0.09 -9.04 16 9 N -0.70 -10.56 5.33 -61.40 -0.33 -10.89 16 10 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 11 C -0.12 -2.02 2.39 -90.27 -0.22 -2.23 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.10 -1.65 5.16 -26.69 -0.14 -1.79 16 14 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 15 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 16 N -0.59 -14.87 2.99 -172.06 -0.51 -15.38 16 17 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 18 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.46 11.20 55.49 0.62 -25.84 16 21 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.15 3.20 5.63 -3.49 -0.02 3.18 16 26 C 0.00 -0.02 11.93 29.90 0.36 0.34 16 27 O -0.23 -2.31 10.20 -17.75 -0.18 -2.49 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.41 6.30 7.45 -40.82 -0.30 5.99 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 1.09 7.16 -51.93 -0.37 0.72 16 45 H 0.24 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -32.94 374.20 -7.17 -40.11 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.88 Total: 2.06 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.04 Total: 8.61 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.35 Total: -58.74 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.51 Total: -14.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.94 -7.17 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614266487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.799 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds