Wall clock time and date at job start Tue Mar 31 2020 14:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47249 * 2 1 4 4 C 1.35361 * 117.00015 * 180.02562 * 3 2 1 5 5 N 1.30549 * 125.44353 * 180.30036 * 4 3 2 6 6 C 1.36328 * 108.38014 * 180.16371 * 5 4 3 7 7 C 1.47368 * 126.41338 * 179.82710 * 6 5 4 8 8 O 1.21627 * 120.00014 * 179.68457 * 7 6 5 9 9 N 1.34774 * 120.00167 * 359.68197 * 7 6 5 10 10 C 1.46499 * 120.00141 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.47178 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.49379 * 305.06458 * 11 10 9 13 13 C 1.53038 * 109.50110 * 185.00202 * 11 10 9 14 14 C 1.53036 * 109.54003 * 178.68265 * 13 11 10 15 15 C 1.53192 * 109.31293 * 61.36202 * 14 13 11 16 16 N 1.46924 * 108.77591 * 305.36430 * 15 14 13 17 17 C 1.36939 * 120.62993 * 233.58522 * 16 15 14 18 18 H 1.08002 * 119.99754 * 151.83452 * 17 16 15 19 19 C 1.38804 * 119.99958 * 331.83412 * 17 16 15 20 20 N 1.31622 * 120.00247 * 343.08098 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 163.08052 * 19 17 16 22 22 H 1.48493 * 109.47005 * 90.00021 * 21 19 17 23 23 H 1.48501 * 109.47040 * 209.99959 * 21 19 17 24 24 H 1.48500 * 109.46752 * 329.99813 * 21 19 17 25 25 C 1.46920 * 118.73855 * 53.86375 * 16 15 14 26 26 C 1.35921 * 107.17629 * 359.55884 * 6 5 4 27 27 O 1.34200 * 125.44485 * 359.97104 * 4 3 2 28 28 H 1.09003 * 109.46876 * 299.99560 * 1 2 3 29 29 H 1.08990 * 109.47335 * 60.00081 * 1 2 3 30 30 H 1.09003 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47174 * 239.99533 * 2 1 3 32 32 H 1.09007 * 109.47290 * 120.00197 * 2 1 3 33 33 H 0.97003 * 119.99813 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47340 * 60.00547 * 10 9 7 35 35 H 1.09003 * 109.47133 * 299.99741 * 10 9 7 36 36 H 1.08998 * 109.46122 * 58.65861 * 13 11 10 37 37 H 1.09004 * 109.44451 * 298.69553 * 13 11 10 38 38 H 1.08996 * 109.49733 * 301.41024 * 14 13 11 39 39 H 1.09005 * 109.52294 * 181.33131 * 14 13 11 40 40 H 1.09001 * 109.58625 * 185.57745 * 15 14 13 41 41 H 1.08997 * 109.70196 * 65.22177 * 15 14 13 42 42 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58855 * 65.92358 * 25 16 15 44 44 H 1.08998 * 109.58990 * 186.35233 * 25 16 15 45 45 H 1.07997 * 126.45912 * 180.23393 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5245 -0.0005 5 7 3.9594 2.6781 0.0050 6 6 5.3039 2.4523 -0.0014 7 6 6.3630 3.4769 -0.0020 8 8 7.5325 3.1427 -0.0023 9 7 6.0358 4.7844 -0.0023 10 6 7.0887 5.8030 -0.0034 11 6 6.4523 7.1944 -0.0029 12 1 5.7633 7.2796 -0.8433 13 6 7.5465 8.2567 -0.1299 14 6 6.9085 9.6474 -0.1624 15 6 6.1507 9.8879 1.1470 16 7 5.1952 8.7902 1.3489 17 6 3.8694 9.0513 1.5711 18 1 3.1204 8.3311 1.2764 19 6 3.4882 10.2415 2.1751 20 7 4.3751 10.9613 2.8290 21 14 1.7162 10.8217 2.0599 22 1 0.9428 10.2808 3.2063 23 1 1.6782 12.3059 2.0933 24 1 1.1193 10.3397 0.7885 25 6 5.6902 7.4074 1.3139 26 6 5.4846 1.1051 -0.0011 27 8 4.2630 0.5426 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.1031 5.0509 -0.0017 34 1 7.7065 5.6861 -0.8938 35 1 7.7078 5.6867 0.8862 36 1 8.1070 8.0927 -1.0502 37 1 8.2212 8.1866 0.7235 38 1 6.2150 9.7099 -1.0009 39 1 7.6864 10.4025 -0.2766 40 1 5.6131 10.8344 1.0895 41 1 6.8544 9.9174 1.9788 42 1 4.1086 11.7929 3.2514 43 1 6.3587 7.2371 2.1578 44 1 4.8487 6.7166 1.3665 45 1 6.4308 0.5846 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614266487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:13 Heat of formation + Delta-G solvation = -58.606804 kcal Electronic energy + Delta-G solvation = -27132.400557 eV Core-core repulsion = 23151.631582 eV Total energy + Delta-G solvation = -3980.768975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.55821 -40.79261 -39.96314 -39.28791 -36.30598 -36.07442 -34.64175 -32.89920 -32.29532 -31.91728 -30.59589 -27.41136 -27.12449 -25.08812 -24.47323 -23.80563 -23.35455 -22.38005 -21.63286 -20.76589 -20.00802 -18.69872 -18.65776 -18.32007 -17.41167 -16.96630 -16.81929 -16.68477 -16.35314 -16.06814 -15.74685 -15.40160 -15.06801 -14.96857 -14.50467 -14.49371 -13.99172 -13.93550 -13.74054 -13.61992 -13.57308 -13.00871 -12.87539 -12.68092 -12.55147 -12.49628 -12.27323 -11.97555 -11.91039 -11.82383 -11.79423 -11.59873 -11.50159 -11.16926 -11.07050 -10.52965 -10.17825 -9.75047 -8.66304 -7.86756 -5.32636 0.01305 0.82498 0.89288 1.46266 1.47390 1.57700 1.66596 2.09815 2.17912 2.51438 3.27636 3.31637 3.60572 3.71882 3.92284 3.94891 3.99134 4.01720 4.05212 4.11138 4.25741 4.38321 4.43064 4.57404 4.59659 4.66676 4.76879 4.82887 4.85887 4.89013 4.91193 5.02190 5.12428 5.17944 5.21760 5.33688 5.37741 5.45780 5.57788 5.63200 5.67685 5.80205 6.27820 6.40024 6.55129 7.02710 7.15919 7.87101 8.38655 9.19200 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.003171 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.537218 B = 8828.130526 C =11185.331949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.260 6.260 4 C 0.385 3.615 5 N -0.488 5.488 6 C -0.080 4.080 7 C 0.603 3.397 8 O -0.563 6.563 9 N -0.705 5.705 10 C 0.136 3.864 11 C -0.102 4.102 12 H 0.072 0.928 13 C -0.095 4.095 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.152 3.848 26 C 0.032 3.968 27 O -0.214 6.214 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.412 0.588 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.051 0.949 41 H -0.006 1.006 42 H 0.250 0.750 43 H 0.009 0.991 44 H 0.047 0.953 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -24.128 -8.934 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.168 6.168 4 C 0.138 3.862 5 N -0.235 5.235 6 C -0.197 4.197 7 C 0.389 3.611 8 O -0.443 6.443 9 N -0.355 5.355 10 C 0.012 3.988 11 C -0.122 4.122 12 H 0.091 0.909 13 C -0.133 4.133 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.333 5.333 17 C -0.394 4.394 18 H 0.082 0.918 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.195 1.195 25 C 0.027 3.973 26 C -0.040 4.040 27 O -0.105 6.105 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.013 0.987 42 H 0.059 0.941 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.484 -23.538 -8.842 25.149 hybrid contribution -1.141 0.184 0.518 1.267 sum -1.624 -23.354 -8.323 24.846 Atomic orbital electron populations 1.21870 0.90025 1.05091 1.03743 1.23445 0.97819 0.77703 1.04255 1.86440 1.08042 1.33423 1.88929 1.23292 0.84169 0.81422 0.97338 1.71055 1.04640 1.23063 1.24723 1.21590 0.89803 0.94905 1.13443 1.16794 0.86194 0.81974 0.76122 1.90797 1.18737 1.81879 1.52856 1.45943 1.11751 1.05176 1.72585 1.21429 0.89380 0.85328 1.02636 1.21806 0.98124 0.93224 0.99049 0.90913 1.21333 0.96381 0.93285 1.02325 1.21999 0.99137 0.97455 0.98326 1.20649 0.90199 0.91824 0.92634 1.44312 1.04865 1.01025 1.83050 1.19501 0.83971 1.03770 1.32123 0.91782 1.25792 1.01255 1.00139 0.97374 1.70193 1.35180 1.16008 1.36733 0.85310 0.80341 0.76924 0.78093 1.21207 1.21709 1.19519 1.21094 0.95826 0.86151 0.94258 1.25629 0.86653 0.91921 0.99815 1.84429 1.16036 1.38494 1.71537 0.91627 0.91395 0.86850 0.89382 0.89646 0.75210 0.89889 0.91565 0.89777 0.92275 0.92997 0.90965 0.93063 0.98743 0.94122 0.97337 0.93417 0.71252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16 2 C 0.04 0.45 6.38 71.98 0.46 0.91 16 3 O -0.26 -5.33 10.19 -64.30 -0.66 -5.98 16 4 C 0.38 8.95 8.98 130.43 1.17 10.12 16 5 N -0.49 -13.89 11.10 -419.38 -4.65 -18.54 16 6 C -0.08 -2.06 6.99 40.31 0.28 -1.78 16 7 C 0.60 17.68 7.81 86.65 0.68 18.36 16 8 O -0.56 -18.13 16.89 -4.12 -0.07 -18.20 16 9 N -0.71 -20.77 5.33 -466.41 -2.49 -23.26 16 10 C 0.14 3.88 5.07 86.38 0.44 4.32 16 11 C -0.10 -3.34 2.39 -10.57 -0.03 -3.36 16 12 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 13 C -0.10 -2.96 5.16 30.62 0.16 -2.80 16 14 C -0.13 -4.82 6.08 30.67 0.19 -4.63 16 15 C 0.17 8.47 5.30 86.36 0.46 8.93 16 16 N -0.61 -31.32 2.99 -698.28 -2.09 -33.40 16 17 C -0.26 -14.89 9.58 84.03 0.81 -14.09 16 18 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 19 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 20 N -0.94 -56.51 11.20 21.65 0.24 -56.27 16 21 Si 0.97 45.86 29.59 68.60 2.03 47.89 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 C 0.15 6.45 5.63 86.51 0.49 6.93 16 26 C 0.03 0.59 11.93 67.28 0.80 1.39 16 27 O -0.21 -3.89 10.20 18.89 0.19 -3.70 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.41 12.55 7.45 -92.71 -0.69 11.86 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.05 2.02 7.16 -2.39 -0.02 2.00 16 45 H 0.27 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.05 374.20 -0.12 -73.17 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.31 Total: 16.85 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 7.06 Total: 21.44 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -8.98 Total: -131.47 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.53 Total: -27.88 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.05 -0.12 -73.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614266487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.564 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds