Wall clock time and date at job start Tue Mar 31 2020 14:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46755 * 2 1 4 4 C 1.35855 * 126.05722 * 124.99623 * 3 2 1 5 5 C 1.35737 * 107.56167 * 180.02562 * 4 3 2 6 6 N 1.40796 * 126.08062 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00148 * 146.75125 * 6 5 4 8 8 S 1.71199 * 120.00037 * 354.68489 * 7 6 5 9 9 N 1.34784 * 119.99581 * 174.41291 * 7 6 5 10 10 C 1.46497 * 119.99492 * 180.27437 * 9 7 6 11 11 C 1.53037 * 109.46211 * 275.02652 * 10 9 7 12 12 C 1.53190 * 109.31220 * 178.60410 * 11 10 9 13 13 N 1.46926 * 108.76994 * 54.65340 * 12 11 10 14 14 C 1.36938 * 120.63179 * 126.39803 * 13 12 11 15 15 H 1.07996 * 120.00696 * 329.42772 * 14 13 12 16 16 C 1.38821 * 119.99687 * 149.41984 * 14 13 12 17 17 N 1.31618 * 119.99968 * 162.22607 * 16 14 13 18 18 Si 1.86794 * 119.99899 * 342.22836 * 16 14 13 19 19 H 1.48497 * 109.47476 * 90.16921 * 18 16 14 20 20 H 1.48499 * 109.47051 * 210.16969 * 18 16 14 21 21 H 1.48504 * 109.47514 * 330.16804 * 18 16 14 22 22 C 1.46923 * 118.73617 * 306.38815 * 13 12 11 23 23 C 1.53046 * 109.45804 * 154.96748 * 10 9 7 24 24 C 1.40251 * 107.84436 * 0.24554 * 5 4 3 25 25 N 1.30837 * 108.34242 * 359.58929 * 24 5 4 26 26 H 1.08992 * 109.47567 * 60.00028 * 1 2 3 27 27 H 1.09002 * 109.46682 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47271 * 299.99594 * 1 2 3 29 29 H 1.08996 * 109.47262 * 240.00150 * 2 1 3 30 30 H 1.08998 * 109.47269 * 119.99698 * 2 1 3 31 31 H 1.07999 * 126.21823 * 0.05047 * 4 3 2 32 32 H 0.97001 * 119.99805 * 326.75372 * 6 5 4 33 33 H 0.96991 * 120.00175 * 0.27186 * 9 7 6 34 34 H 1.09006 * 109.46266 * 34.99758 * 10 9 7 35 35 H 1.09005 * 109.49285 * 298.56756 * 11 10 9 36 36 H 1.09000 * 109.49861 * 58.66393 * 11 10 9 37 37 H 1.08996 * 109.59957 * 294.86267 * 12 11 10 38 38 H 1.09003 * 109.70349 * 174.50096 * 12 11 10 39 39 H 0.96997 * 120.00194 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.58396 * 293.81186 * 22 13 12 41 41 H 1.09004 * 109.70540 * 173.46434 * 22 13 12 42 42 H 1.08996 * 109.49984 * 301.33441 * 23 10 9 43 43 H 1.09004 * 109.49069 * 61.40266 * 23 10 9 44 44 H 1.07997 * 125.82714 * 179.72117 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8787 1.9253 0.8997 5 6 3.0744 3.2214 0.5473 6 7 3.8975 4.1473 1.2162 7 6 4.5442 5.1016 0.5180 8 16 4.4748 5.1060 -1.1926 9 7 5.2411 6.0557 1.1666 10 6 5.9391 7.0964 0.4078 11 6 7.3173 6.5822 -0.0142 12 6 8.0301 7.6600 -0.8369 13 7 8.0636 8.9049 -0.0572 14 6 9.2476 9.5547 0.1692 15 1 10.1672 8.9928 0.2397 16 6 9.2657 10.9358 0.3079 17 7 10.3027 11.5280 0.8614 18 14 7.8185 11.9537 -0.2909 19 1 6.8332 12.1086 0.8093 20 1 8.2981 13.2927 -0.7179 21 1 7.1735 11.2692 -1.4401 22 6 6.8027 9.4394 0.4747 23 6 6.1034 8.3416 1.2825 24 6 2.3060 3.4761 -0.5980 25 7 1.6802 2.3753 -0.9272 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.3259 1.4184 1.7420 32 1 3.9991 4.0984 2.1797 33 1 5.2804 6.0532 2.1358 34 1 5.3588 7.3500 -0.4794 35 1 7.9071 6.3521 0.8732 36 1 7.2006 5.6819 -0.6176 37 1 7.4890 7.8266 -1.7682 38 1 9.0483 7.3400 -1.0582 39 1 10.3156 12.4931 0.9580 40 1 6.1614 9.7512 -0.3498 41 1 7.0087 10.2931 1.1203 42 1 5.1226 8.6937 1.6020 43 1 6.7043 8.0945 2.1577 44 1 2.2435 4.4192 -1.1205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730438053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:19 Heat of formation + Delta-G solvation = 128.849860 kcal Electronic energy + Delta-G solvation = -24681.198559 eV Core-core repulsion = 21183.603936 eV Total energy + Delta-G solvation = -3497.594622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48869 -39.37148 -37.58860 -35.38956 -34.20650 -32.30132 -30.70634 -30.48553 -30.19722 -28.44537 -25.21824 -24.35669 -23.88614 -22.74155 -22.18494 -21.35532 -20.83336 -19.69254 -18.31621 -18.14032 -16.89745 -16.45318 -15.81487 -15.55297 -15.38642 -15.04457 -14.72571 -14.21225 -14.15692 -14.07704 -13.80644 -13.33522 -13.10948 -12.83699 -12.76068 -12.50530 -12.38605 -12.00591 -11.86170 -11.80550 -11.17440 -11.08942 -10.91476 -10.82495 -10.62222 -10.44020 -10.16082 -9.82644 -9.69268 -9.62154 -9.47649 -8.64787 -8.26986 -7.68024 -7.08096 -6.93364 -5.95963 -3.35842 1.13932 1.71330 1.88053 2.15952 2.65739 2.80307 3.29988 3.44309 3.49220 3.53111 4.16125 4.43153 4.51798 4.53584 4.74521 4.87416 4.94787 4.99540 5.12871 5.22999 5.25272 5.29552 5.37140 5.46315 5.59605 5.70325 5.75809 5.79893 5.97974 6.06449 6.18269 6.19465 6.39700 6.48812 6.55362 6.57287 6.61738 6.68853 6.69388 6.91667 6.93317 7.22835 7.54175 7.97929 8.33204 8.93075 9.70221 10.08813 11.20037 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.040876 B = 0.002409 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.835328 B =11622.441154 C =11697.324825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 N -0.376 5.376 4 C 0.041 3.959 5 C -0.006 4.006 6 N -0.610 5.610 7 C 0.560 3.440 8 S -0.626 6.626 9 N -0.670 5.670 10 C 0.148 3.852 11 C -0.139 4.139 12 C 0.153 3.847 13 N -0.606 5.606 14 C -0.260 4.260 15 H 0.085 0.915 16 C 0.024 3.976 17 N -0.910 5.910 18 Si 0.884 3.116 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.268 1.268 22 C 0.131 3.869 23 C -0.142 4.142 24 C 0.097 3.903 25 N -0.290 5.290 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.174 0.826 32 H 0.402 0.598 33 H 0.394 0.606 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.263 0.737 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.501 -22.081 5.745 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.015 3.985 3 N -0.159 5.159 4 C -0.107 4.107 5 C -0.112 4.112 6 N -0.237 5.237 7 C 0.201 3.799 8 S -0.499 6.499 9 N -0.296 5.296 10 C 0.045 3.955 11 C -0.179 4.179 12 C 0.026 3.974 13 N -0.330 5.330 14 C -0.388 4.388 15 H 0.103 0.897 16 C -0.175 4.175 17 N -0.553 5.553 18 Si 0.715 3.285 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.193 1.193 22 C 0.004 3.996 23 C -0.182 4.182 24 C -0.092 4.092 25 N -0.111 5.111 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.191 0.809 32 H 0.239 0.761 33 H 0.230 0.770 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.245 -22.540 3.708 29.869 hybrid contribution 0.117 0.951 2.341 2.530 sum -19.127 -21.589 6.050 29.471 Atomic orbital electron populations 1.22069 0.93807 1.02795 1.03708 1.21638 0.95967 0.77122 1.03724 1.48530 1.36402 1.10400 1.20599 1.21989 0.98187 0.92591 0.97983 1.17268 1.03072 0.89160 1.01649 1.41457 1.44615 1.28449 1.09135 1.22328 0.80104 0.81479 0.96009 1.93403 1.80853 1.86524 0.89109 1.45547 1.48148 1.25964 1.09909 1.21624 0.93775 0.84519 0.95536 1.22364 0.94170 1.00324 1.01085 1.20891 0.98831 0.85336 0.92327 1.44411 1.03530 1.25870 1.59201 1.18915 0.86107 0.89496 1.44309 0.89747 1.25378 0.96583 0.96549 0.99036 1.69805 1.30914 1.09853 1.44730 0.86938 0.82445 0.79436 0.79721 1.21599 1.23085 1.19273 1.21317 0.87820 0.94798 0.95645 1.22414 1.00440 0.95800 0.99527 1.24529 0.91516 0.98688 0.94507 1.77463 1.23807 0.96393 1.13390 0.90891 0.90754 0.92152 0.89666 0.88850 0.80886 0.76071 0.76971 0.86886 0.92359 0.90909 0.95056 0.91478 0.92745 0.95165 0.90393 0.92176 0.91278 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.10 37.16 0.38 -0.44 16 2 C 0.14 0.72 7.24 -4.04 -0.03 0.69 16 3 N -0.38 -3.43 3.71 -61.02 -0.23 -3.65 16 4 C 0.04 0.34 11.52 -16.67 -0.19 0.14 16 5 C -0.01 -0.07 6.41 -83.87 -0.54 -0.61 16 6 N -0.61 -5.62 5.48 -11.57 -0.06 -5.69 16 7 C 0.56 6.97 7.88 -86.91 -0.68 6.28 16 8 S -0.63 -10.57 23.79 -107.50 -2.56 -13.13 16 9 N -0.67 -7.62 5.08 -55.48 -0.28 -7.90 16 10 C 0.15 2.21 2.18 -67.89 -0.15 2.07 16 11 C -0.14 -2.29 5.60 -26.61 -0.15 -2.44 16 12 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 13 N -0.61 -14.00 2.73 -172.32 -0.47 -14.48 16 14 C -0.26 -7.13 10.03 -15.06 -0.15 -7.28 16 15 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 17 N -0.91 -27.57 13.97 55.49 0.78 -26.80 16 18 Si 0.88 22.11 24.33 -169.99 -4.14 17.98 16 19 H -0.29 -6.85 6.56 56.52 0.37 -6.48 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 H -0.27 -6.65 6.70 56.52 0.38 -6.27 16 22 C 0.13 2.71 4.19 -3.71 -0.02 2.69 16 23 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 24 C 0.10 1.25 10.00 -17.22 -0.17 1.08 16 25 N -0.29 -3.61 12.41 30.70 0.38 -3.23 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.40 2.23 8.85 -40.82 -0.36 1.87 16 33 H 0.39 3.26 8.62 -40.82 -0.35 2.91 16 34 H 0.11 1.93 6.82 -51.93 -0.35 1.57 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.03 0.63 7.04 -51.93 -0.37 0.27 16 41 H 0.08 1.76 4.66 -51.93 -0.24 1.52 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.21 2.88 6.28 -49.44 -0.31 2.57 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -34.97 359.65 -9.75 -44.72 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.62 Total: 3.37 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.97 Total: 3.39 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.11 Total: -61.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.98 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -2.56 Total: -13.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.97 -9.75 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.571 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds