Wall clock time and date at job start Tue Mar 31 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46995 * 2 1 4 4 N 1.46498 * 109.47269 * 239.99737 * 2 1 3 5 5 C 1.35044 * 124.87768 * 84.72019 * 4 2 1 6 6 C 1.35354 * 107.24050 * 179.89360 * 5 4 2 7 7 C 1.41546 * 105.50166 * 0.35267 * 6 5 4 8 8 C 1.47575 * 126.52560 * 179.75632 * 7 6 5 9 9 O 1.21499 * 119.99944 * 0.02562 * 8 7 6 10 10 O 1.34733 * 119.99954 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99522 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47559 * 30.00226 * 11 10 8 13 13 C 1.52997 * 109.47082 * 269.99835 * 11 10 8 14 14 C 1.50701 * 109.47150 * 150.00254 * 11 10 8 15 15 O 1.21288 * 119.99564 * 16.02195 * 14 11 10 16 16 N 1.34774 * 120.00664 * 196.02550 * 14 11 10 17 17 C 1.46508 * 119.99518 * 5.36225 * 16 14 11 18 18 C 1.46496 * 120.00669 * 185.36422 * 16 14 11 19 19 C 1.50699 * 109.47338 * 89.99418 * 18 16 14 20 20 H 1.07998 * 119.99900 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00034 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99782 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47031 * 60.00376 * 23 21 19 25 25 H 1.48499 * 109.46810 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47279 * 300.00316 * 23 21 19 27 27 N 1.28468 * 124.87897 * 265.02342 * 4 2 1 28 28 H 1.09008 * 109.46608 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47374 * 60.00596 * 1 2 3 30 30 H 1.08996 * 109.47305 * 300.00082 * 1 2 3 31 31 H 1.09009 * 109.47070 * 119.99478 * 2 1 3 32 32 H 1.09005 * 109.47230 * 59.99546 * 3 2 1 33 33 H 1.08998 * 109.47071 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46573 * 299.99894 * 3 2 1 35 35 H 1.07999 * 126.38426 * 0.04173 * 5 4 2 36 36 H 1.07993 * 127.24673 * 180.09183 * 6 5 4 37 37 H 1.09001 * 109.47431 * 186.13721 * 13 11 10 38 38 H 1.09000 * 109.47326 * 306.13971 * 13 11 10 39 39 H 1.08997 * 109.47356 * 66.14000 * 13 11 10 40 40 H 1.09004 * 109.47017 * 84.82165 * 17 16 14 41 41 H 1.08993 * 109.46970 * 204.82611 * 17 16 14 42 42 H 1.08999 * 109.46854 * 324.82255 * 17 16 14 43 43 H 1.08995 * 109.47511 * 210.00427 * 18 16 14 44 44 H 1.09007 * 109.46731 * 329.99936 * 18 16 14 45 45 H 0.96999 * 119.99163 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1797 -0.1163 -2.4077 6 6 2.6475 -1.0712 -3.2452 7 6 2.7461 -2.2461 -2.4619 8 6 3.2050 -3.5716 -2.9206 9 8 3.5455 -3.7302 -4.0761 10 8 3.2474 -4.6055 -2.0578 11 6 3.7097 -5.8798 -2.5783 12 1 4.4211 -5.7060 -3.3856 13 6 2.5170 -6.6757 -3.1120 14 6 4.3808 -6.6587 -1.4765 15 8 4.2146 -6.3376 -0.3188 16 7 5.1658 -7.7121 -1.7775 17 6 5.4617 -8.0289 -3.1770 18 6 5.7231 -8.5405 -0.7054 19 6 4.7685 -9.6632 -0.3902 20 1 3.8398 -9.7511 -0.9343 21 6 5.0814 -10.5787 0.5922 22 7 6.2126 -10.4718 1.2544 23 14 3.8984 -11.9707 0.9825 24 1 3.6948 -12.8021 -0.2310 25 1 4.4634 -12.8103 2.0693 26 1 2.5965 -11.4060 1.4197 27 7 2.3495 -1.9310 -1.2445 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.9759 0.9136 -2.6607 36 1 2.8901 -0.9610 -4.2917 37 1 2.8465 -7.6734 -3.4022 38 1 1.7567 -6.7558 -2.3350 39 1 2.0981 -6.1650 -3.9790 40 1 6.3088 -7.4311 -3.5135 41 1 5.7056 -9.0874 -3.2662 42 1 4.5907 -7.8036 -3.7924 43 1 6.6787 -8.9552 -1.0261 44 1 5.8726 -7.9299 0.1851 45 1 6.4324 -11.1157 1.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733583116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:19 Heat of formation + Delta-G solvation = -33.854018 kcal Electronic energy + Delta-G solvation = -27272.694838 eV Core-core repulsion = 23292.999224 eV Total energy + Delta-G solvation = -3979.695614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94926 -40.35987 -38.76965 -36.41392 -36.08779 -34.80791 -32.78887 -31.67276 -31.20630 -30.51975 -27.89405 -27.73797 -26.02417 -25.32940 -24.07511 -23.08543 -22.10275 -20.65640 -20.20177 -18.74102 -18.10264 -17.34584 -16.66760 -16.50811 -16.30990 -15.87316 -15.63009 -15.09846 -14.89134 -14.52791 -14.25958 -14.08318 -13.61518 -13.59796 -13.30802 -13.07995 -12.88300 -12.76561 -12.67311 -12.26216 -12.08825 -12.01113 -11.94349 -11.70592 -11.66719 -11.32747 -11.19093 -11.04751 -10.90223 -10.71072 -10.62769 -10.49031 -10.14584 -9.63731 -9.50937 -9.33384 -8.82865 -8.41866 -7.65874 -6.02936 -4.08099 1.29016 1.86021 2.03486 2.63455 3.13608 3.31677 3.33850 3.37889 3.42573 3.88232 3.99578 4.27375 4.44641 4.45091 4.48150 4.52148 4.87884 4.90619 4.96730 5.07888 5.11080 5.17800 5.21054 5.25727 5.31498 5.34246 5.46919 5.50725 5.59495 5.60299 5.77174 5.81331 5.92856 6.10719 6.15930 6.31069 6.46226 6.51037 7.04247 7.45166 7.51739 7.59560 7.91034 7.94303 8.23525 8.35695 8.88950 9.04851 9.56778 11.05167 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002657 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.296769 B =10533.915162 C =11390.808811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 C -0.164 4.164 4 N -0.273 5.273 5 C -0.020 4.020 6 C -0.174 4.174 7 C -0.006 4.006 8 C 0.555 3.445 9 O -0.505 6.505 10 O -0.310 6.310 11 C 0.070 3.930 12 H 0.104 0.896 13 C -0.164 4.164 14 C 0.510 3.490 15 O -0.518 6.518 16 N -0.597 5.597 17 C 0.074 3.926 18 C 0.246 3.754 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.276 1.276 27 N -0.223 5.223 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 23.716 -8.861 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.038 3.962 3 C -0.222 4.222 4 N -0.063 5.063 5 C -0.162 4.162 6 C -0.201 4.201 7 C -0.163 4.163 8 C 0.397 3.603 9 O -0.391 6.391 10 O -0.224 6.224 11 C 0.011 3.989 12 H 0.121 0.879 13 C -0.222 4.222 14 C 0.295 3.705 15 O -0.393 6.393 16 N -0.331 5.331 17 C -0.070 4.070 18 C 0.127 3.873 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.201 1.201 27 N -0.060 5.060 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.183 0.817 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.645 23.290 -7.251 26.230 hybrid contribution -0.436 -0.572 -0.725 1.021 sum -10.081 22.718 -7.976 26.103 Atomic orbital electron populations 1.22236 0.92617 1.03993 1.03516 1.21688 0.95711 0.93375 0.85466 1.22202 1.02681 0.93301 1.04032 1.45950 1.44659 1.06039 1.09681 1.22777 1.07022 1.00974 0.85439 1.21731 1.06565 0.90459 1.01380 1.20744 1.10645 0.93317 0.91605 1.19650 0.74117 0.83240 0.83299 1.90825 1.45714 1.84034 1.18567 1.86779 1.76537 1.18110 1.40996 1.22713 0.98067 0.81300 0.96783 0.87873 1.22165 0.97471 1.00663 1.01886 1.19746 0.80202 0.81459 0.89139 1.90706 1.60847 1.67255 1.20470 1.48067 1.48529 1.28436 1.08106 1.21832 0.99945 1.02546 0.82697 1.19354 0.93709 0.89052 0.85170 1.21401 1.05148 1.10442 1.19785 0.92397 1.24939 0.95456 0.98049 0.95629 1.69929 1.22798 1.36760 1.23821 0.86545 0.81233 0.81630 0.77940 1.20217 1.21172 1.20138 1.73838 1.13522 0.97074 1.21557 0.91093 0.91592 0.89837 0.86781 0.89453 0.91104 0.91214 0.80035 0.81720 0.89435 0.90627 0.91206 0.93432 0.90115 0.92220 0.94637 0.93590 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 9.52 37.16 0.35 -0.53 16 2 C 0.14 0.92 3.80 -67.93 -0.26 0.66 16 3 C -0.16 -0.61 8.81 37.16 0.33 -0.28 16 4 N -0.27 -2.82 3.22 -54.82 -0.18 -2.99 16 5 C -0.02 -0.18 10.54 -17.17 -0.18 -0.36 16 6 C -0.17 -1.94 10.81 -39.35 -0.43 -2.37 16 7 C -0.01 -0.09 7.17 -82.79 -0.59 -0.68 16 8 C 0.55 9.54 7.94 34.54 0.27 9.82 16 9 O -0.50 -8.79 16.18 -19.27 -0.31 -9.10 16 10 O -0.31 -6.02 9.48 -47.11 -0.45 -6.47 16 11 C 0.07 1.28 2.14 -27.88 -0.06 1.22 16 12 H 0.10 1.71 6.31 -51.93 -0.33 1.38 16 13 C -0.16 -2.56 9.19 37.16 0.34 -2.21 16 14 C 0.51 11.64 6.95 -10.99 -0.08 11.56 16 15 O -0.52 -14.20 16.13 -13.55 -0.22 -14.42 16 16 N -0.60 -13.28 2.86 -182.95 -0.52 -13.80 16 17 C 0.07 1.22 9.79 59.85 0.59 1.80 16 18 C 0.25 6.59 5.18 -5.20 -0.03 6.56 16 19 C -0.53 -15.15 9.39 -34.44 -0.32 -15.47 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 23 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 N -0.22 -3.30 11.99 33.41 0.40 -2.90 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.18 7.06 -51.93 -0.37 -0.19 16 35 H 0.18 0.77 7.17 -52.49 -0.38 0.40 16 36 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.09 1.27 6.33 -51.93 -0.33 0.94 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 42 H 0.06 0.83 4.92 -51.93 -0.26 0.57 16 43 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 44 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -37.54 383.38 -6.59 -44.12 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.65 Total: -2.49 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.16 Total: 11.40 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.44 Total: -45.82 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.98 Total: -29.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.54 -6.59 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733583116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.267 kcal (2) G-P(sol) polarization free energy of solvation -37.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds