Wall clock time and date at job start Tue Mar 31 2020 14:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46995 * 2 1 4 4 N 1.46498 * 109.47269 * 239.99737 * 2 1 3 5 5 C 1.35044 * 124.87768 * 84.72019 * 4 2 1 6 6 C 1.35354 * 107.24050 * 179.89360 * 5 4 2 7 7 C 1.41546 * 105.50166 * 0.35267 * 6 5 4 8 8 C 1.47575 * 126.52560 * 179.75632 * 7 6 5 9 9 O 1.21499 * 119.99944 * 0.02562 * 8 7 6 10 10 O 1.34733 * 119.99954 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99522 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47559 * 30.00226 * 11 10 8 13 13 C 1.52997 * 109.47082 * 269.99835 * 11 10 8 14 14 C 1.50701 * 109.47150 * 150.00254 * 11 10 8 15 15 O 1.21288 * 119.99564 * 16.02195 * 14 11 10 16 16 N 1.34774 * 120.00664 * 196.02550 * 14 11 10 17 17 C 1.46508 * 119.99518 * 5.36225 * 16 14 11 18 18 C 1.46496 * 120.00669 * 185.36422 * 16 14 11 19 19 C 1.50699 * 109.47338 * 89.99418 * 18 16 14 20 20 H 1.07998 * 119.99900 * 0.02562 * 19 18 16 21 21 C 1.37880 * 120.00034 * 179.97438 * 19 18 16 22 22 N 1.31518 * 119.99782 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99815 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47031 * 60.00376 * 23 21 19 25 25 H 1.48499 * 109.46810 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47279 * 300.00316 * 23 21 19 27 27 N 1.28468 * 124.87897 * 265.02342 * 4 2 1 28 28 H 1.09008 * 109.46608 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47374 * 60.00596 * 1 2 3 30 30 H 1.08996 * 109.47305 * 300.00082 * 1 2 3 31 31 H 1.09009 * 109.47070 * 119.99478 * 2 1 3 32 32 H 1.09005 * 109.47230 * 59.99546 * 3 2 1 33 33 H 1.08998 * 109.47071 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46573 * 299.99894 * 3 2 1 35 35 H 1.07999 * 126.38426 * 0.04173 * 5 4 2 36 36 H 1.07993 * 127.24673 * 180.09183 * 6 5 4 37 37 H 1.09001 * 109.47431 * 186.13721 * 13 11 10 38 38 H 1.09000 * 109.47326 * 306.13971 * 13 11 10 39 39 H 1.08997 * 109.47356 * 66.14000 * 13 11 10 40 40 H 1.09004 * 109.47017 * 84.82165 * 17 16 14 41 41 H 1.08993 * 109.46970 * 204.82611 * 17 16 14 42 42 H 1.08999 * 109.46854 * 324.82255 * 17 16 14 43 43 H 1.08995 * 109.47511 * 210.00427 * 18 16 14 44 44 H 1.09007 * 109.46731 * 329.99936 * 18 16 14 45 45 H 0.96999 * 119.99163 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1797 -0.1163 -2.4077 6 6 2.6475 -1.0712 -3.2452 7 6 2.7461 -2.2461 -2.4619 8 6 3.2050 -3.5716 -2.9206 9 8 3.5455 -3.7302 -4.0761 10 8 3.2474 -4.6055 -2.0578 11 6 3.7097 -5.8798 -2.5783 12 1 4.4211 -5.7060 -3.3856 13 6 2.5170 -6.6757 -3.1120 14 6 4.3808 -6.6587 -1.4765 15 8 4.2146 -6.3376 -0.3188 16 7 5.1658 -7.7121 -1.7775 17 6 5.4617 -8.0289 -3.1770 18 6 5.7231 -8.5405 -0.7054 19 6 4.7685 -9.6632 -0.3902 20 1 3.8398 -9.7511 -0.9343 21 6 5.0814 -10.5787 0.5922 22 7 6.2126 -10.4718 1.2544 23 14 3.8984 -11.9707 0.9825 24 1 3.6948 -12.8021 -0.2310 25 1 4.4634 -12.8103 2.0693 26 1 2.5965 -11.4060 1.4197 27 7 2.3495 -1.9310 -1.2445 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.9759 0.9136 -2.6607 36 1 2.8901 -0.9610 -4.2917 37 1 2.8465 -7.6734 -3.4022 38 1 1.7567 -6.7558 -2.3350 39 1 2.0981 -6.1650 -3.9790 40 1 6.3088 -7.4311 -3.5135 41 1 5.7056 -9.0874 -3.2662 42 1 4.5907 -7.8036 -3.7924 43 1 6.6787 -8.9552 -1.0261 44 1 5.8726 -7.9299 0.1851 45 1 6.4324 -11.1157 1.9458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733583116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:18 Heat of formation + Delta-G solvation = -58.514901 kcal Electronic energy + Delta-G solvation = -27273.764214 eV Core-core repulsion = 23292.999224 eV Total energy + Delta-G solvation = -3980.764990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.80258 -41.79882 -40.46340 -37.70123 -36.80370 -36.70371 -34.87019 -33.16353 -32.01405 -31.42378 -29.71619 -28.24429 -27.60476 -26.53634 -25.70677 -24.22629 -23.45762 -21.67014 -21.11441 -20.42171 -19.15471 -18.70274 -18.37238 -18.03678 -17.48315 -17.37909 -16.87723 -16.69544 -16.22508 -16.08919 -15.42147 -14.86474 -14.82341 -14.77878 -14.32177 -14.26092 -14.00755 -13.90478 -13.66421 -13.57262 -13.34351 -13.28140 -13.14349 -13.07672 -12.85692 -12.67535 -12.53438 -12.38565 -12.20526 -12.17454 -12.03381 -11.97788 -11.90544 -11.74780 -10.66565 -10.65034 -10.39391 -10.15750 -9.54464 -8.23826 -6.38942 0.15886 1.05896 1.10850 1.36814 1.41823 1.48254 1.54514 1.60774 1.99848 2.31386 2.42766 3.06177 3.22201 3.37435 3.59838 3.73660 3.79849 3.83828 3.85862 4.02447 4.12948 4.27951 4.49271 4.55819 4.56827 4.63515 4.64424 4.66778 4.72151 4.80328 4.84768 4.86615 4.91724 5.05366 5.13823 5.15607 5.19340 5.21762 5.27622 5.50303 5.76984 5.84286 6.02032 6.39924 6.57309 6.69473 6.89269 7.17428 7.34276 8.83845 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002657 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.296769 B =10533.915162 C =11390.808811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.157 4.157 4 N -0.265 5.265 5 C 0.005 3.995 6 C -0.183 4.183 7 C -0.042 4.042 8 C 0.552 3.448 9 O -0.512 6.512 10 O -0.337 6.337 11 C 0.079 3.921 12 H 0.125 0.875 13 C -0.158 4.158 14 C 0.502 3.498 15 O -0.579 6.579 16 N -0.600 5.600 17 C 0.066 3.934 18 C 0.258 3.742 19 C -0.546 4.546 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.257 1.257 25 H -0.279 1.279 26 H -0.278 1.278 27 N -0.271 5.271 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.182 0.818 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.032 0.968 44 H -0.002 1.002 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 25.389 -10.811 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.056 5.056 5 C -0.137 4.137 6 C -0.210 4.210 7 C -0.197 4.197 8 C 0.396 3.604 9 O -0.400 6.400 10 O -0.251 6.251 11 C 0.021 3.979 12 H 0.143 0.857 13 C -0.215 4.215 14 C 0.288 3.712 15 O -0.459 6.459 16 N -0.332 5.332 17 C -0.076 4.076 18 C 0.138 3.862 19 C -0.584 4.584 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.181 1.181 25 H -0.204 1.204 26 H -0.204 1.204 27 N -0.110 5.110 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.250 0.750 36 H 0.199 0.801 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.050 0.950 44 H 0.016 0.984 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.289 24.954 -9.262 28.913 hybrid contribution 0.097 -0.949 -0.077 0.957 sum -11.192 24.005 -9.339 28.084 Atomic orbital electron populations 1.22220 0.91348 1.02758 1.05425 1.22094 0.96710 0.94714 0.83818 1.22218 1.02029 0.91015 1.06184 1.46405 1.42989 1.04927 1.11319 1.23511 1.04048 1.02367 0.83805 1.22053 1.07096 0.89482 1.02393 1.20829 1.12733 0.93285 0.92872 1.20061 0.73804 0.83442 0.83083 1.90785 1.46400 1.84222 1.18563 1.86784 1.76960 1.18896 1.42497 1.22643 0.99331 0.81188 0.94781 0.85740 1.22173 0.95904 1.01212 1.02183 1.20599 0.79584 0.81393 0.89575 1.90664 1.62926 1.69021 1.23274 1.48065 1.47851 1.27694 1.09569 1.22178 1.02479 1.03310 0.79594 1.18877 0.93771 0.88452 0.85135 1.21672 1.05385 1.11039 1.20311 0.92335 1.25896 0.97224 1.00817 0.95246 1.70056 1.24608 1.37861 1.24305 0.85431 0.78355 0.78315 0.78502 1.18135 1.20363 1.20351 1.73763 1.15405 0.99669 1.22118 0.93859 0.90174 0.87407 0.88367 0.87346 0.92084 0.89031 0.74996 0.80103 0.88038 0.92035 0.88609 0.90869 0.89877 0.89004 0.94993 0.98415 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.52 71.98 0.69 -0.74 16 2 C 0.13 1.51 3.80 44.99 0.17 1.68 16 3 C -0.16 -0.68 8.81 71.98 0.63 -0.05 16 4 N -0.27 -5.22 3.22 -327.37 -1.05 -6.27 16 5 C 0.00 0.07 10.54 83.53 0.88 0.95 16 6 C -0.18 -3.81 10.81 22.42 0.24 -3.57 16 7 C -0.04 -1.28 7.17 42.42 0.30 -0.98 16 8 C 0.55 19.36 7.94 70.29 0.56 19.92 16 9 O -0.51 -17.60 16.18 19.84 0.32 -17.28 16 10 O -0.34 -13.55 9.48 -50.19 -0.48 -14.03 16 11 C 0.08 2.90 2.14 29.85 0.06 2.96 16 12 H 0.13 3.99 6.31 -2.39 -0.02 3.98 16 13 C -0.16 -4.73 9.19 71.98 0.66 -4.07 16 14 C 0.50 23.72 6.95 87.66 0.61 24.33 16 15 O -0.58 -33.88 16.13 15.21 0.25 -33.64 16 16 N -0.60 -27.20 2.86 -851.12 -2.43 -29.63 16 17 C 0.07 2.09 9.79 127.77 1.25 3.34 16 18 C 0.26 14.48 5.18 85.63 0.44 14.92 16 19 C -0.55 -31.98 9.39 25.60 0.24 -31.74 16 20 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 21 C 0.01 0.42 5.46 84.65 0.46 0.89 16 22 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 23 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 27 N -0.27 -8.26 11.99 -48.22 -0.58 -8.83 16 28 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.11 0.06 8.14 -2.38 -0.02 0.05 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.09 0.02 7.06 -2.39 -0.02 0.01 16 35 H 0.23 0.73 7.17 -2.91 -0.02 0.71 16 36 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.10 2.73 6.33 -2.39 -0.02 2.71 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.39 8.14 -2.39 -0.02 2.38 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 42 H 0.09 2.32 4.92 -2.39 -0.01 2.31 16 43 H 0.03 1.78 8.07 -2.39 -0.02 1.77 16 44 H 0.00 -0.15 7.36 -2.38 -0.02 -0.17 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -87.91 383.38 6.54 -81.37 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.99 Total: 9.92 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 7.21 Total: 27.84 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -3.78 Total: -101.62 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: 0.09 Total: -64.94 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -87.91 6.54 -81.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733583116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.851 kcal (2) G-P(sol) polarization free energy of solvation -87.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds