Wall clock time and date at job start Tue Mar 31 2020 14:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47247 * 2 1 4 4 C 1.46504 * 119.99530 * 269.99886 * 3 2 1 5 5 C 1.50700 * 109.46905 * 269.99439 * 4 3 2 6 6 H 1.08005 * 119.99998 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99970 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00134 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99810 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47476 * 89.99865 * 9 7 5 11 11 H 1.48504 * 109.46909 * 209.99920 * 9 7 5 12 12 H 1.48504 * 109.47460 * 329.99727 * 9 7 5 13 13 C 1.34775 * 120.00015 * 89.99613 * 3 2 1 14 14 O 1.21280 * 119.99523 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00418 * 0.02562 * 13 3 2 16 16 O 1.45191 * 109.47400 * 180.02562 * 15 13 3 17 17 C 1.34731 * 117.00228 * 179.97438 * 16 15 13 18 18 O 1.21487 * 119.99661 * 0.02562 * 17 16 15 19 19 C 1.47580 * 120.00154 * 179.97438 * 17 16 15 20 20 C 1.41545 * 126.52295 * 179.97438 * 19 17 16 21 21 C 1.35347 * 105.50359 * 179.75932 * 20 19 17 22 22 N 1.35049 * 107.23917 * 0.35184 * 21 20 19 23 23 C 1.46506 * 124.87942 * 179.89137 * 22 21 20 24 24 C 1.52997 * 109.47289 * 274.72221 * 23 22 21 25 25 C 1.52992 * 109.46999 * 34.72689 * 23 22 21 26 26 N 1.28464 * 110.24183 * 359.63128 * 22 21 20 27 27 H 1.09001 * 109.47538 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47401 * 300.00613 * 1 2 3 29 29 H 1.09006 * 109.46846 * 60.00448 * 1 2 3 30 30 H 1.08998 * 109.47401 * 239.99387 * 2 1 3 31 31 H 1.09006 * 109.46846 * 119.99552 * 2 1 3 32 32 H 1.08997 * 109.47325 * 29.99845 * 4 3 2 33 33 H 1.09002 * 109.46928 * 149.99898 * 4 3 2 34 34 H 0.96998 * 120.00269 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46819 * 59.99459 * 15 13 3 36 36 H 1.09002 * 109.46772 * 300.00058 * 15 13 3 37 37 H 1.08001 * 127.25111 * 0.02562 * 20 19 17 38 38 H 1.08003 * 126.38620 * 180.20783 * 21 20 19 39 39 H 1.08998 * 109.46566 * 154.71955 * 23 22 21 40 40 H 1.09002 * 109.47153 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.46832 * 60.00146 * 24 23 22 42 42 H 1.09004 * 109.47261 * 300.00128 * 24 23 22 43 43 H 1.09001 * 109.47066 * 299.99819 * 25 23 22 44 44 H 1.08996 * 109.47747 * 59.99485 * 25 23 22 45 45 H 1.09002 * 109.47103 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8775 8 7 5.3914 2.1833 -3.2573 9 14 3.0136 3.4368 -3.9281 10 1 3.1172 4.8568 -3.5060 11 1 3.4068 3.3145 -5.3550 12 1 1.6137 2.9710 -3.7588 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 8 2.3060 2.1959 3.5759 17 6 2.1341 1.7106 4.8209 18 8 1.7335 0.5747 4.9801 19 6 2.4336 2.5583 5.9912 20 6 2.3033 2.1919 7.3522 21 6 2.6934 3.2786 8.0584 22 7 3.0277 4.2364 7.1669 23 6 3.5033 5.5772 7.5166 24 6 2.3046 6.4962 7.7602 25 6 4.3542 5.5015 8.7859 26 7 2.8738 3.8010 5.9681 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 5.7175 2.5737 -4.0832 35 1 2.6227 0.4188 2.5299 36 1 0.9443 1.0116 2.5302 37 1 1.9677 1.2433 7.7446 38 1 2.7284 3.3648 9.1344 39 1 4.1051 5.9739 6.6990 40 1 2.6585 7.4937 8.0208 41 1 1.7028 6.0994 8.5778 42 1 1.6984 6.5501 6.8558 43 1 3.7524 5.1048 9.6035 44 1 5.2081 4.8468 8.6124 45 1 4.7084 6.4991 9.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733585667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:00 Heat of formation + Delta-G solvation = -32.583805 kcal Electronic energy + Delta-G solvation = -27012.929862 eV Core-core repulsion = 23033.289329 eV Total energy + Delta-G solvation = -3979.640533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.96012 -40.25371 -38.92349 -36.42449 -36.11435 -35.33697 -32.72869 -31.22602 -30.91124 -30.38750 -29.18492 -27.89206 -27.03318 -24.75475 -23.03809 -22.98923 -22.13665 -20.71683 -20.27582 -18.64735 -18.04066 -17.36186 -16.97371 -16.65059 -16.59281 -16.01817 -15.93192 -15.28514 -14.89700 -14.57314 -14.10920 -14.01406 -13.67926 -13.51013 -13.49175 -13.27282 -12.93616 -12.80401 -12.71439 -12.49544 -12.35727 -12.14975 -11.94032 -11.79274 -11.70355 -11.42214 -11.05551 -10.98137 -10.84668 -10.75734 -10.51312 -10.47785 -10.14255 -9.52660 -9.51946 -9.34338 -9.03745 -8.56950 -7.76582 -6.06618 -4.05550 1.27021 1.85064 2.01772 2.57534 3.10690 3.25243 3.31204 3.36996 3.39112 3.80003 3.94173 4.27286 4.41482 4.43991 4.47809 4.51278 4.85375 4.90019 4.94062 5.07631 5.11488 5.21520 5.23684 5.25867 5.26822 5.34094 5.37682 5.46275 5.52163 5.55087 5.59935 5.71280 5.98075 6.08453 6.14909 6.35348 6.40358 6.49920 6.70085 6.94241 7.30412 7.56071 7.61980 7.88560 8.17153 8.47996 8.88823 8.97808 9.53161 11.06800 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002726 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.848225 B =10267.132460 C =11442.121983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.218 3.782 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.515 6.515 15 C 0.050 3.950 16 O -0.314 6.314 17 C 0.556 3.444 18 O -0.505 6.505 19 C -0.006 4.006 20 C -0.173 4.173 21 C -0.020 4.020 22 N -0.272 5.272 23 C 0.138 3.862 24 C -0.166 4.166 25 C -0.164 4.164 26 N -0.222 5.222 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.165 0.835 38 H 0.183 0.817 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 2.438 25.430 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.098 3.902 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.390 6.390 15 C -0.027 4.027 16 O -0.227 6.227 17 C 0.398 3.602 18 O -0.391 6.391 19 C -0.164 4.164 20 C -0.201 4.201 21 C -0.162 4.162 22 N -0.063 5.063 23 C 0.038 3.962 24 C -0.224 4.224 25 C -0.222 4.222 26 N -0.059 5.059 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.183 0.817 38 H 0.200 0.800 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.673 3.725 24.557 25.996 hybrid contribution -0.677 -0.352 -0.136 0.775 sum -8.350 3.373 24.420 26.028 Atomic orbital electron populations 1.22248 0.96532 1.01851 1.02323 1.21539 0.93628 0.83593 1.03497 1.47860 1.64419 1.13549 1.06412 1.19692 0.97479 0.93451 0.79567 1.21333 0.95297 1.32986 1.07200 0.90671 1.24851 0.95006 0.95783 0.97343 1.69894 1.15141 1.44968 1.23551 0.86851 0.81455 0.81661 0.79724 1.19872 1.21074 1.19030 1.19703 0.79441 0.87135 0.84273 1.90727 1.44005 1.17536 1.86687 1.22964 1.02847 0.92693 0.84212 1.86703 1.78204 1.44132 1.13698 1.19618 0.74025 0.84344 0.82200 1.90841 1.43207 1.18407 1.86658 1.20714 1.10917 0.92378 0.92365 1.21725 1.07207 1.00730 0.90428 1.22784 1.06154 0.89343 0.97910 1.45959 1.45136 1.12415 1.02786 1.21690 0.96843 0.77688 1.00024 1.22234 0.97291 0.99411 1.03420 1.22202 1.00038 1.04339 0.95648 1.73844 1.15415 1.12031 1.04639 0.91696 0.92987 0.92024 0.89210 0.91329 0.94890 0.94434 0.92552 0.88309 0.88540 0.81699 0.80013 0.86766 0.89824 0.91602 0.91077 0.91211 0.91095 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 5 C -0.53 -15.41 9.94 -34.44 -0.34 -15.76 16 6 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.51 11.11 7.75 -10.99 -0.09 11.03 16 14 O -0.51 -13.62 16.08 -14.10 -0.23 -13.85 16 15 C 0.05 0.87 4.51 36.00 0.16 1.03 16 16 O -0.31 -5.95 9.76 -47.26 -0.46 -6.41 16 17 C 0.56 9.36 7.97 34.54 0.28 9.64 16 18 O -0.50 -8.62 16.72 -19.26 -0.32 -8.95 16 19 C -0.01 -0.09 7.17 -82.79 -0.59 -0.69 16 20 C -0.17 -1.91 10.81 -39.35 -0.43 -2.34 16 21 C -0.02 -0.17 10.54 -17.17 -0.18 -0.35 16 22 N -0.27 -2.80 3.22 -54.83 -0.18 -2.98 16 23 C 0.14 0.92 3.80 -67.93 -0.26 0.66 16 24 C -0.17 -0.89 9.52 37.16 0.35 -0.54 16 25 C -0.16 -0.61 8.80 37.15 0.33 -0.29 16 26 N -0.22 -3.28 11.99 33.41 0.40 -2.88 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 31 H 0.07 0.93 6.44 -51.93 -0.33 0.60 16 32 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 33 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.10 1.55 7.40 -51.93 -0.38 1.16 16 36 H 0.10 1.41 7.18 -51.93 -0.37 1.04 16 37 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.18 0.76 7.16 -52.48 -0.38 0.39 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.18 7.05 -51.93 -0.37 -0.19 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -38.47 383.12 -6.62 -45.09 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.75 Total: -2.44 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -0.53 Total: 9.58 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.57 Total: -45.89 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.01 Total: -29.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.47 -6.62 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733585667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.504 kcal (2) G-P(sol) polarization free energy of solvation -38.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds