Wall clock time and date at job start Tue Mar 31 2020 14:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47247 * 2 1 4 4 C 1.46504 * 119.99530 * 269.99886 * 3 2 1 5 5 C 1.50700 * 109.46905 * 269.99439 * 4 3 2 6 6 H 1.08005 * 119.99998 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99970 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00134 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99810 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47476 * 89.99865 * 9 7 5 11 11 H 1.48504 * 109.46909 * 209.99920 * 9 7 5 12 12 H 1.48504 * 109.47460 * 329.99727 * 9 7 5 13 13 C 1.34775 * 120.00015 * 89.99613 * 3 2 1 14 14 O 1.21280 * 119.99523 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00418 * 0.02562 * 13 3 2 16 16 O 1.45191 * 109.47400 * 180.02562 * 15 13 3 17 17 C 1.34731 * 117.00228 * 179.97438 * 16 15 13 18 18 O 1.21487 * 119.99661 * 0.02562 * 17 16 15 19 19 C 1.47580 * 120.00154 * 179.97438 * 17 16 15 20 20 C 1.41545 * 126.52295 * 179.97438 * 19 17 16 21 21 C 1.35347 * 105.50359 * 179.75932 * 20 19 17 22 22 N 1.35049 * 107.23917 * 0.35184 * 21 20 19 23 23 C 1.46506 * 124.87942 * 179.89137 * 22 21 20 24 24 C 1.52997 * 109.47289 * 274.72221 * 23 22 21 25 25 C 1.52992 * 109.46999 * 34.72689 * 23 22 21 26 26 N 1.28464 * 110.24183 * 359.63128 * 22 21 20 27 27 H 1.09001 * 109.47538 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47401 * 300.00613 * 1 2 3 29 29 H 1.09006 * 109.46846 * 60.00448 * 1 2 3 30 30 H 1.08998 * 109.47401 * 239.99387 * 2 1 3 31 31 H 1.09006 * 109.46846 * 119.99552 * 2 1 3 32 32 H 1.08997 * 109.47325 * 29.99845 * 4 3 2 33 33 H 1.09002 * 109.46928 * 149.99898 * 4 3 2 34 34 H 0.96998 * 120.00269 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46819 * 59.99459 * 15 13 3 36 36 H 1.09002 * 109.46772 * 300.00058 * 15 13 3 37 37 H 1.08001 * 127.25111 * 0.02562 * 20 19 17 38 38 H 1.08003 * 126.38620 * 180.20783 * 21 20 19 39 39 H 1.08998 * 109.46566 * 154.71955 * 23 22 21 40 40 H 1.09002 * 109.47153 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.46832 * 60.00146 * 24 23 22 42 42 H 1.09004 * 109.47261 * 300.00128 * 24 23 22 43 43 H 1.09001 * 109.47066 * 299.99819 * 25 23 22 44 44 H 1.08996 * 109.47747 * 59.99485 * 25 23 22 45 45 H 1.09002 * 109.47103 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0960 7 6 4.1495 2.3903 -2.8775 8 7 5.3914 2.1833 -3.2573 9 14 3.0136 3.4368 -3.9281 10 1 3.1172 4.8568 -3.5060 11 1 3.4068 3.3145 -5.3550 12 1 1.6137 2.9710 -3.7588 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 8 2.3060 2.1959 3.5759 17 6 2.1341 1.7106 4.8209 18 8 1.7335 0.5747 4.9801 19 6 2.4336 2.5583 5.9912 20 6 2.3033 2.1919 7.3522 21 6 2.6934 3.2786 8.0584 22 7 3.0277 4.2364 7.1669 23 6 3.5033 5.5772 7.5166 24 6 2.3046 6.4962 7.7602 25 6 4.3542 5.5015 8.7859 26 7 2.8738 3.8010 5.9681 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 5.7175 2.5737 -4.0832 35 1 2.6227 0.4188 2.5299 36 1 0.9443 1.0116 2.5302 37 1 1.9677 1.2433 7.7446 38 1 2.7284 3.3648 9.1344 39 1 4.1051 5.9739 6.6990 40 1 2.6585 7.4937 8.0208 41 1 1.7028 6.0994 8.5778 42 1 1.6984 6.5501 6.8558 43 1 3.7524 5.1048 9.6035 44 1 5.2081 4.8468 8.6124 45 1 4.7084 6.4991 9.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733585667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:59 Heat of formation + Delta-G solvation = -58.528909 kcal Electronic energy + Delta-G solvation = -27014.054926 eV Core-core repulsion = 23033.289329 eV Total energy + Delta-G solvation = -3980.765598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.80453 -41.64407 -40.55179 -37.69161 -37.03922 -36.80089 -34.89759 -32.15349 -32.01598 -31.69734 -30.65083 -28.80421 -28.23185 -25.84902 -24.49736 -24.11471 -23.58192 -21.72895 -21.11502 -20.26308 -19.16300 -19.06047 -18.39378 -17.98767 -17.90609 -17.44734 -16.93724 -16.84120 -16.30842 -15.75765 -15.45280 -15.03564 -14.81091 -14.77495 -14.55225 -14.28629 -14.16740 -13.89957 -13.85822 -13.73982 -13.41760 -13.28062 -13.18330 -13.07411 -12.58224 -12.43912 -12.38826 -12.17552 -12.16306 -12.05337 -12.03192 -11.91523 -11.81256 -11.75639 -10.85023 -10.81957 -10.39717 -10.15886 -9.55025 -8.35298 -6.41017 0.15582 1.03412 1.10587 1.32071 1.36810 1.44841 1.52848 1.58503 1.99631 2.30035 2.32644 2.98799 3.22563 3.37581 3.62813 3.82879 3.83531 3.88070 3.92960 4.03192 4.12981 4.16575 4.36030 4.55562 4.58002 4.63786 4.65359 4.70932 4.75077 4.80207 4.84355 4.86488 4.94854 4.98684 5.07503 5.15341 5.21631 5.27217 5.35878 5.43523 5.55237 5.83924 6.20128 6.38610 6.52845 6.60358 6.88942 7.13484 7.26911 8.81840 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002726 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.848225 B =10267.132460 C =11442.121983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.091 3.909 3 N -0.591 5.591 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.235 1.235 13 C 0.502 3.498 14 O -0.575 6.575 15 C 0.060 3.940 16 O -0.342 6.342 17 C 0.555 3.445 18 O -0.513 6.513 19 C -0.042 4.042 20 C -0.182 4.182 21 C 0.005 3.995 22 N -0.266 5.266 23 C 0.126 3.874 24 C -0.160 4.160 25 C -0.157 4.157 26 N -0.271 5.271 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.019 0.981 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.130 0.870 37 H 0.182 0.818 38 H 0.234 0.766 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 2.350 27.762 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.104 3.896 5 C -0.578 4.578 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.198 1.198 12 H -0.158 1.158 13 C 0.289 3.711 14 O -0.454 6.454 15 C -0.017 4.017 16 O -0.256 6.256 17 C 0.398 3.602 18 O -0.400 6.400 19 C -0.197 4.197 20 C -0.210 4.210 21 C -0.137 4.137 22 N -0.057 5.057 23 C 0.027 3.973 24 C -0.218 4.218 25 C -0.214 4.214 26 N -0.110 5.110 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.199 0.801 38 H 0.250 0.750 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.866 3.574 26.897 28.871 hybrid contribution 0.103 -0.324 -0.734 0.808 sum -9.763 3.250 26.163 28.114 Atomic orbital electron populations 1.22183 0.93591 1.04013 1.02258 1.21919 0.95977 0.80632 1.04502 1.47965 1.63868 1.15397 1.05131 1.19391 0.95158 0.93115 0.81892 1.21551 0.97019 1.32334 1.06862 0.95332 1.25862 0.96775 0.97125 0.98928 1.70047 1.17462 1.46501 1.24503 0.85709 0.80551 0.78903 0.77759 1.20307 1.19814 1.15805 1.20490 0.78122 0.86649 0.85858 1.90686 1.46786 1.20252 1.87710 1.22911 1.05091 0.91927 0.81763 1.86701 1.78846 1.45227 1.14842 1.19995 0.73610 0.84677 0.81882 1.90804 1.43906 1.18672 1.86638 1.20825 1.13045 0.92896 0.92976 1.22051 1.07750 1.02364 0.88812 1.23516 1.03069 0.87528 0.99629 1.46408 1.43623 1.13654 1.01978 1.22089 0.97734 0.76405 1.01102 1.22218 0.96509 1.00507 1.02522 1.22217 0.99308 1.05640 0.94281 1.73769 1.17268 1.12594 1.07338 0.88357 0.92361 0.92807 0.89809 0.88866 0.92381 0.96246 0.92190 0.86539 0.85270 0.80070 0.75004 0.88373 0.87408 0.90178 0.93902 0.89022 0.92038 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.24 71.98 0.74 -3.00 16 2 C 0.09 2.77 5.93 86.38 0.51 3.28 16 3 N -0.59 -25.09 2.46 -826.16 -2.03 -27.12 16 4 C 0.23 11.32 4.23 85.63 0.36 11.68 16 5 C -0.54 -32.55 9.94 25.60 0.25 -32.30 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.67 5.47 84.66 0.46 1.13 16 8 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 13 C 0.50 22.47 7.75 87.66 0.68 23.15 16 14 O -0.57 -32.04 16.08 15.77 0.25 -31.78 16 15 C 0.06 2.07 4.51 71.23 0.32 2.39 16 16 O -0.34 -13.42 9.76 -50.02 -0.49 -13.90 16 17 C 0.55 19.07 7.97 70.29 0.56 19.63 16 18 O -0.51 -17.37 16.72 19.88 0.33 -17.04 16 19 C -0.04 -1.28 7.17 42.42 0.30 -0.97 16 20 C -0.18 -3.77 10.81 22.42 0.24 -3.52 16 21 C 0.00 0.07 10.54 83.53 0.88 0.95 16 22 N -0.27 -5.22 3.22 -327.39 -1.05 -6.28 16 23 C 0.13 1.52 3.80 44.99 0.17 1.69 16 24 C -0.16 -1.46 9.52 71.98 0.69 -0.77 16 25 C -0.16 -0.69 8.80 71.98 0.63 -0.06 16 26 N -0.27 -8.23 11.99 -48.22 -0.58 -8.81 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 29 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 31 H 0.09 2.35 6.44 -2.38 -0.02 2.34 16 32 H 0.06 2.62 7.13 -2.39 -0.02 2.60 16 33 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 34 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 35 H 0.12 3.59 7.40 -2.39 -0.02 3.57 16 36 H 0.13 3.58 7.18 -2.39 -0.02 3.57 16 37 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.23 0.72 7.16 -2.91 -0.02 0.70 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.09 0.03 7.05 -2.39 -0.02 0.01 16 44 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 Total: -1.00 -90.98 383.12 6.36 -84.62 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.93 Total: 10.57 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 6.80 Total: 23.29 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -3.36 Total: -102.83 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: 0.10 Total: -62.73 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -90.98 6.36 -84.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733585667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.094 kcal (2) G-P(sol) polarization free energy of solvation -90.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds