Wall clock time and date at job start Tue Mar 31 2020 14:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 N 1.46897 * 109.46860 * 239.99826 * 2 1 3 5 5 C 1.46949 * 111.00410 * 307.37452 * 4 2 1 6 6 C 1.53054 * 109.36811 * 183.18892 * 5 4 2 7 7 N 1.46958 * 109.36347 * 301.59960 * 6 5 4 8 8 C 1.46899 * 111.00061 * 183.18531 * 7 6 5 9 9 C 1.50700 * 109.46847 * 169.99618 * 8 7 6 10 10 O 1.21285 * 120.00524 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99692 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99834 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47006 * 179.72762 * 12 11 9 14 14 H 1.08001 * 120.00042 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99999 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99884 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47386 * 59.99608 * 17 15 13 19 19 H 1.48500 * 109.46762 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46900 * 299.99554 * 17 15 13 21 21 C 1.46963 * 110.88309 * 59.31476 * 7 6 5 22 22 C 1.46967 * 110.99883 * 71.17362 * 4 2 1 23 23 C 1.53002 * 109.47005 * 120.00170 * 2 1 3 24 24 F 1.39897 * 109.46867 * 173.86027 * 23 2 1 25 25 F 1.39894 * 109.46812 * 293.86080 * 23 2 1 26 26 F 1.39899 * 109.47261 * 53.85986 * 23 2 1 27 27 H 1.09003 * 109.47173 * 300.00242 * 1 2 3 28 28 H 1.09004 * 109.46995 * 59.99809 * 1 2 3 29 29 H 1.08997 * 109.46981 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.49200 * 63.22229 * 5 4 2 31 31 H 1.08997 * 109.50714 * 303.16373 * 5 4 2 32 32 H 1.09000 * 109.49179 * 181.63211 * 6 5 4 33 33 H 1.08997 * 109.50777 * 61.57284 * 6 5 4 34 34 H 1.09001 * 109.47124 * 49.99877 * 8 7 6 35 35 H 1.08991 * 109.47432 * 289.99877 * 8 7 6 36 36 H 0.96993 * 119.99965 * 359.73220 * 11 9 8 37 37 H 1.08997 * 109.47065 * 299.72810 * 12 11 9 38 38 H 1.08998 * 109.46980 * 59.72520 * 12 11 9 39 39 H 0.96998 * 119.99935 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.48341 * 60.64646 * 21 7 6 41 41 H 1.08991 * 109.48704 * 180.70962 * 21 7 6 42 42 H 1.08995 * 109.49030 * 296.77571 * 22 4 2 43 43 H 1.08999 * 109.48656 * 56.82147 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.4101 -2.0237 -1.3247 6 6 2.0040 -2.7417 -2.5389 7 7 1.7621 -1.9392 -3.7460 8 6 2.2518 -2.6317 -4.9454 9 6 1.7733 -1.9046 -6.1757 10 8 1.0918 -0.9075 -6.0643 11 7 2.1035 -2.3620 -7.3998 12 6 1.6387 -1.6549 -8.5958 13 6 2.1470 -2.3612 -9.8262 14 1 2.7551 -3.2482 -9.7272 15 6 1.8359 -1.8749 -11.0782 16 7 1.0951 -0.7950 -11.1988 17 14 2.4654 -2.7508 -12.6033 18 1 1.9517 -4.1439 -12.6217 19 1 1.9955 -2.0333 -13.8156 20 1 3.9502 -2.7709 -12.5851 21 6 2.3717 -0.6078 -3.6207 22 6 1.7777 0.1101 -2.4066 23 6 2.0400 -0.7213 1.2492 24 9 3.4319 -0.8447 1.1809 25 9 1.6924 0.0146 2.3871 26 9 1.4621 -1.9933 1.3219 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.3329 -1.9197 -1.4548 31 1 1.6133 -2.6033 -0.4243 32 1 1.5324 -3.7180 -2.6508 33 1 3.0770 -2.8704 -2.3968 34 1 1.8714 -3.6531 -4.9560 35 1 3.3415 -2.6499 -4.9350 36 1 2.6523 -3.1567 -7.4888 37 1 0.5489 -1.6408 -8.6091 38 1 2.0151 -0.6320 -8.5824 39 1 0.8765 -0.4527 -12.0796 40 1 3.4490 -0.7119 -3.4906 41 1 2.1682 -0.0286 -4.5213 42 1 0.7048 0.2384 -2.5490 43 1 2.2491 1.0865 -2.2946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749800751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:41 Heat of formation + Delta-G solvation = -170.867950 kcal Electronic energy + Delta-G solvation = -28223.408610 eV Core-core repulsion = 23695.914886 eV Total energy + Delta-G solvation = -4527.493724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.40659 -47.96793 -47.77489 -39.95722 -38.63104 -36.14235 -34.13823 -32.37555 -31.81222 -31.05571 -28.59932 -27.12713 -26.54740 -24.49036 -23.79876 -22.39773 -21.86425 -19.76804 -19.64289 -18.80046 -18.70834 -17.65883 -17.12984 -16.32604 -15.85908 -15.56841 -15.31165 -15.05765 -14.96502 -14.79379 -14.64436 -14.43154 -14.27968 -14.09913 -14.09345 -13.99850 -13.88387 -13.61884 -13.43830 -12.73164 -12.57692 -12.39331 -12.17391 -12.00651 -11.86655 -11.83924 -11.40867 -11.16484 -11.04384 -10.95478 -10.90073 -10.73771 -10.31935 -9.42424 -9.04757 -8.78974 -8.73996 -8.24091 -7.86896 -6.17908 -4.24928 2.39593 3.18385 3.24182 3.29083 3.30406 3.36872 3.46480 3.64046 3.73271 4.12139 4.23759 4.40958 4.47000 4.57953 4.70544 4.95820 5.01537 5.08216 5.17022 5.18180 5.24072 5.33267 5.35888 5.46395 5.51296 5.58281 5.63889 5.67215 5.75157 5.95297 6.07405 6.43499 6.57148 6.94808 7.07849 7.30950 7.43802 7.50813 7.66177 7.96066 8.62396 8.77609 9.10980 9.41904 10.92244 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.041755 B = 0.002148 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.412277 B =13033.114761 C =13273.481755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.039 3.961 3 H 0.124 0.876 4 N -0.529 5.529 5 C 0.030 3.970 6 C 0.059 3.941 7 N -0.521 5.521 8 C 0.036 3.964 9 C 0.499 3.501 10 O -0.541 6.541 11 N -0.715 5.715 12 C 0.252 3.748 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.053 3.947 22 C 0.063 3.937 23 C 0.460 3.540 24 F -0.172 7.172 25 F -0.184 7.184 26 F -0.181 7.181 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.037 0.963 41 H 0.107 0.893 42 H 0.055 0.945 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -1.166 25.262 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.072 4.072 3 H 0.142 0.858 4 N -0.253 5.253 5 C -0.097 4.097 6 C -0.070 4.070 7 N -0.246 5.246 8 C -0.095 4.095 9 C 0.283 3.717 10 O -0.419 6.419 11 N -0.364 5.364 12 C 0.131 3.869 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.074 4.074 22 C -0.064 4.064 23 C 0.405 3.595 24 F -0.154 7.154 25 F -0.166 7.166 26 F -0.162 7.162 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.125 0.875 42 H 0.073 0.927 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.536 -0.325 25.180 25.229 hybrid contribution 0.695 -0.974 -0.735 1.404 sum 2.231 -1.299 24.445 24.581 Atomic orbital electron populations 1.22494 0.93682 1.04479 1.04511 1.22813 0.96283 0.99534 0.88569 0.85813 1.62356 1.57602 1.03666 1.01709 1.22736 0.98155 0.89438 0.99368 1.22160 0.99342 0.96559 0.88889 1.61806 1.58841 1.02904 1.01033 1.21995 0.98786 0.98801 0.89945 1.20293 0.81295 0.85513 0.84585 1.90616 1.38628 1.26059 1.86569 1.46463 1.52739 1.30606 1.06568 1.19071 0.95509 0.92512 0.79777 1.21194 1.33974 1.12442 0.90636 0.91975 1.24950 0.94850 0.94975 0.99235 1.69960 1.36330 1.21699 1.24315 0.86475 0.79170 0.79586 0.81680 1.20056 1.21071 1.20078 1.22350 0.95867 0.90400 0.98825 1.22216 1.00589 0.96070 0.87563 1.20509 0.76041 0.77395 0.85544 1.93207 1.29858 1.95883 1.96426 1.93176 1.92007 1.77080 1.54290 1.93061 1.84536 1.42347 1.96273 0.90754 0.89790 0.90531 0.92610 0.88543 0.89984 0.93962 0.88304 0.92304 0.77809 0.95569 0.95637 0.92385 0.94497 0.87455 0.92684 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 8.16 37.16 0.30 -1.07 16 2 C 0.04 0.31 2.44 -67.71 -0.17 0.15 16 3 H 0.12 0.83 8.00 -51.93 -0.42 0.41 16 4 N -0.53 -5.21 4.47 -226.49 -1.01 -6.23 16 5 C 0.03 0.30 4.51 -3.77 -0.02 0.28 16 6 C 0.06 0.63 5.61 -3.76 -0.02 0.61 16 7 N -0.52 -7.06 4.45 -235.91 -1.05 -8.11 16 8 C 0.04 0.50 5.45 -4.98 -0.03 0.47 16 9 C 0.50 9.55 7.53 -10.98 -0.08 9.47 16 10 O -0.54 -12.40 14.34 5.55 0.08 -12.32 16 11 N -0.71 -14.60 5.55 -61.47 -0.34 -14.94 16 12 C 0.25 6.57 5.43 -5.19 -0.03 6.55 16 13 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 14 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 17 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 C 0.05 0.72 5.26 -3.77 -0.02 0.70 16 22 C 0.06 0.68 5.35 -3.76 -0.02 0.66 16 23 C 0.46 4.12 2.72 37.16 0.10 4.22 16 24 F -0.17 -1.81 17.13 2.25 0.04 -1.77 16 25 F -0.18 -1.64 17.04 2.25 0.04 -1.60 16 26 F -0.18 -1.69 13.50 2.25 0.03 -1.65 16 27 H 0.07 0.45 7.97 -51.93 -0.41 0.03 16 28 H 0.08 0.62 6.80 -51.93 -0.35 0.26 16 29 H 0.08 0.58 5.91 -51.93 -0.31 0.27 16 30 H 0.06 0.57 6.41 -51.93 -0.33 0.24 16 31 H 0.10 0.90 5.22 -51.93 -0.27 0.63 16 32 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 35 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 1.76 5.85 -51.93 -0.30 1.45 16 42 H 0.05 0.64 6.80 -51.93 -0.35 0.28 16 43 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -31.45 349.83 -7.61 -39.06 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.99 Total: 3.04 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.39 Total: 8.77 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -1.67 Total: -54.44 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.45 -7.61 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749800751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.811 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds