Wall clock time and date at job start Tue Mar 31 2020 14:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47642 * 2 1 4 4 N 1.46902 * 109.46921 * 119.99635 * 2 1 3 5 5 C 1.46963 * 110.99888 * 52.29673 * 4 2 1 6 6 C 1.53054 * 109.36336 * 176.81021 * 5 4 2 7 7 N 1.46956 * 109.36285 * 58.40106 * 6 5 4 8 8 C 1.46902 * 110.99855 * 176.80680 * 7 6 5 9 9 C 1.50703 * 109.46940 * 191.19700 * 8 7 6 10 10 O 1.21282 * 120.00079 * 356.23132 * 9 8 7 11 11 N 1.34770 * 119.99685 * 176.23506 * 9 8 7 12 12 C 1.46499 * 120.00005 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47515 * 179.97438 * 12 11 9 14 14 H 1.08009 * 119.99871 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00557 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99443 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00279 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47547 * 59.99784 * 17 15 13 19 19 H 1.48502 * 109.47042 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46974 * 299.99946 * 17 15 13 21 21 C 1.46954 * 110.88235 * 300.67983 * 7 6 5 22 22 C 1.46954 * 110.99990 * 288.50046 * 4 2 1 23 23 C 1.53001 * 109.47214 * 239.99618 * 2 1 3 24 24 F 1.39902 * 109.46758 * 305.96650 * 23 2 1 25 25 F 1.39900 * 109.47067 * 65.96743 * 23 2 1 26 26 F 1.39897 * 109.46917 * 185.97169 * 23 2 1 27 27 H 1.09006 * 109.46519 * 60.00200 * 1 2 3 28 28 H 1.08992 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47149 * 300.00589 * 1 2 3 30 30 H 1.08994 * 109.48622 * 296.78094 * 5 4 2 31 31 H 1.08996 * 109.48445 * 56.84828 * 5 4 2 32 32 H 1.08999 * 109.48811 * 298.43425 * 6 5 4 33 33 H 1.08993 * 109.48627 * 178.37100 * 6 5 4 34 34 H 1.08994 * 109.47251 * 311.19621 * 8 7 6 35 35 H 1.09004 * 109.46415 * 71.20031 * 8 7 6 36 36 H 0.96999 * 120.00515 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47295 * 299.99632 * 12 11 9 38 38 H 1.09002 * 109.47094 * 59.99843 * 12 11 9 39 39 H 0.97005 * 120.00132 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.48809 * 299.35007 * 21 7 6 41 41 H 1.08998 * 109.48948 * 179.28674 * 21 7 6 42 42 H 1.09002 * 109.48944 * 303.15025 * 22 4 2 43 43 H 1.08999 * 109.49320 * 63.20034 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4041 -2.0206 1.3290 6 6 1.9980 -2.7390 2.5430 7 7 1.7631 -1.9329 3.7492 8 6 2.2527 -2.6254 4.9487 9 6 1.7565 -1.9105 6.1791 10 8 1.1210 -0.8835 6.0688 11 7 2.0191 -2.4125 7.4019 12 6 1.5373 -1.7173 8.5980 13 6 1.9610 -2.4795 9.8271 14 1 2.5324 -3.3906 9.7272 15 6 1.6200 -2.0134 11.0791 16 7 0.9246 -0.9038 11.2007 17 14 2.1458 -2.9579 12.6025 18 1 3.6277 -3.0457 12.6437 19 1 1.6573 -2.2532 13.8149 20 1 1.5699 -4.3261 12.5600 21 6 2.3786 -0.6048 3.6196 22 6 1.7847 0.1136 2.4056 23 6 2.0401 -0.7213 -1.2492 24 9 1.4651 -1.9948 -1.3197 25 9 1.6891 0.0125 -2.3874 26 9 3.4323 -0.8413 -1.1826 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.3278 -1.9112 1.4618 31 1 1.6026 -2.6027 0.4291 32 1 3.0700 -2.8726 2.3980 33 1 1.5221 -3.7128 2.6580 34 1 1.8848 -3.6514 4.9515 35 1 3.3427 -2.6302 4.9459 36 1 2.5271 -3.2341 7.4902 37 1 1.9597 -0.7129 8.6295 38 1 0.4496 -1.6532 8.5677 39 1 0.6844 -0.5760 12.0815 40 1 3.4550 -0.7142 3.4869 41 1 2.1802 -0.0227 4.5196 42 1 2.2607 1.0874 2.2907 43 1 0.7128 0.2475 2.5505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749800753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:44 Heat of formation + Delta-G solvation = -170.943917 kcal Electronic energy + Delta-G solvation = -28216.303042 eV Core-core repulsion = 23688.806024 eV Total energy + Delta-G solvation = -4527.497018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.40426 -47.96587 -47.77434 -39.95440 -38.63024 -36.14351 -34.13820 -32.37564 -31.81228 -31.05234 -28.60017 -27.12629 -26.54495 -24.48771 -23.79798 -22.39378 -21.86439 -19.76286 -19.65180 -18.79886 -18.70656 -17.65767 -17.12971 -16.32404 -15.85976 -15.57016 -15.30404 -15.05509 -14.97419 -14.78769 -14.64215 -14.43046 -14.28434 -14.10762 -14.08131 -13.99896 -13.87673 -13.61686 -13.44035 -12.73075 -12.57979 -12.39452 -12.17407 -12.00340 -11.86361 -11.82900 -11.41100 -11.16432 -11.04648 -10.95151 -10.90134 -10.74211 -10.31648 -9.42282 -9.05140 -8.78867 -8.73918 -8.23414 -7.86819 -6.17830 -4.24818 2.39652 3.18414 3.24219 3.29124 3.30442 3.36607 3.46608 3.64876 3.73323 4.12233 4.24088 4.41279 4.47043 4.57925 4.70609 4.95902 5.01624 5.08269 5.16993 5.18242 5.24192 5.33408 5.35975 5.46568 5.51114 5.58055 5.63765 5.67383 5.75234 5.95407 6.08316 6.43569 6.57295 6.95164 7.08254 7.31072 7.43997 7.50952 7.66218 7.96178 8.62538 8.77684 9.11156 9.41977 10.92314 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.042189 B = 0.002143 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.527070 B =13061.661882 C =13308.551395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.039 3.961 3 H 0.124 0.876 4 N -0.529 5.529 5 C 0.030 3.970 6 C 0.059 3.941 7 N -0.521 5.521 8 C 0.036 3.964 9 C 0.500 3.500 10 O -0.541 6.541 11 N -0.715 5.715 12 C 0.252 3.748 13 C -0.544 4.544 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.053 3.947 22 C 0.063 3.937 23 C 0.460 3.540 24 F -0.181 7.181 25 F -0.184 7.184 26 F -0.173 7.173 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.037 0.963 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -0.941 -25.256 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.072 4.072 3 H 0.142 0.858 4 N -0.253 5.253 5 C -0.097 4.097 6 C -0.070 4.070 7 N -0.246 5.246 8 C -0.095 4.095 9 C 0.284 3.716 10 O -0.419 6.419 11 N -0.364 5.364 12 C 0.131 3.869 13 C -0.582 4.582 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.075 4.075 22 C -0.064 4.064 23 C 0.405 3.595 24 F -0.162 7.162 25 F -0.166 7.166 26 F -0.154 7.154 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.929 -0.076 -25.173 25.247 hybrid contribution 0.615 -1.026 0.729 1.401 sum 2.544 -1.102 -24.443 24.600 Atomic orbital electron populations 1.22492 0.93677 1.04480 1.04509 1.22812 0.96285 0.99524 0.88583 0.85821 1.62358 1.57502 1.03736 1.01744 1.22739 0.98096 0.89499 0.99361 1.22163 0.99369 0.96519 0.88910 1.61801 1.58778 1.02981 1.01054 1.21995 0.98762 0.98813 0.89965 1.20288 0.80956 0.85810 0.84566 1.90607 1.40346 1.24472 1.86517 1.46455 1.55333 1.27935 1.06633 1.19071 0.95314 0.92713 0.79776 1.21196 1.36476 1.09870 0.90697 0.91977 1.24952 0.94785 0.95052 0.99231 1.69963 1.37193 1.20844 1.24305 0.86475 0.78954 0.79806 0.81666 1.20074 1.21072 1.20062 1.22366 0.95779 0.90462 0.98856 1.22219 1.00613 0.96026 0.87589 1.20512 0.76037 0.77397 0.85539 1.93061 1.84655 1.42223 1.96277 1.93177 1.91925 1.77188 1.54267 1.93207 1.29828 1.95909 1.96437 0.90754 0.90528 0.89795 0.92607 0.88541 0.93966 0.89985 0.88377 0.92219 0.77806 0.95640 0.95564 0.92388 0.94522 0.87331 0.89960 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 8.15 37.16 0.30 -1.07 16 2 C 0.04 0.31 2.44 -67.71 -0.17 0.15 16 3 H 0.12 0.82 8.00 -51.93 -0.42 0.41 16 4 N -0.53 -5.21 4.47 -226.48 -1.01 -6.22 16 5 C 0.03 0.30 4.51 -3.76 -0.02 0.29 16 6 C 0.06 0.63 5.60 -3.77 -0.02 0.61 16 7 N -0.52 -7.06 4.45 -235.91 -1.05 -8.11 16 8 C 0.04 0.50 5.45 -4.97 -0.03 0.47 16 9 C 0.50 9.57 7.60 -10.99 -0.08 9.48 16 10 O -0.54 -12.40 14.27 5.56 0.08 -12.32 16 11 N -0.71 -14.60 5.55 -61.47 -0.34 -14.94 16 12 C 0.25 6.57 5.43 -5.19 -0.03 6.55 16 13 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 14 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 C 0.05 0.71 5.26 -3.77 -0.02 0.69 16 22 C 0.06 0.68 5.35 -3.77 -0.02 0.66 16 23 C 0.46 4.12 2.73 37.16 0.10 4.22 16 24 F -0.18 -1.69 13.51 2.25 0.03 -1.66 16 25 F -0.18 -1.64 17.03 2.25 0.04 -1.60 16 26 F -0.17 -1.81 17.13 2.25 0.04 -1.77 16 27 H 0.07 0.45 7.96 -51.93 -0.41 0.03 16 28 H 0.08 0.58 5.91 -51.93 -0.31 0.27 16 29 H 0.08 0.62 6.81 -51.93 -0.35 0.26 16 30 H 0.06 0.57 6.41 -51.93 -0.33 0.24 16 31 H 0.10 0.90 5.22 -51.93 -0.27 0.63 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.10 1.15 8.00 -51.93 -0.42 0.74 16 35 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.11 1.77 5.83 -51.93 -0.30 1.47 16 42 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 43 H 0.05 0.63 6.82 -51.93 -0.35 0.28 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -31.44 349.79 -7.61 -39.05 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.99 Total: 3.04 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.39 Total: 8.77 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -1.67 Total: -54.45 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.44 -7.61 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749800753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.889 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds