Wall clock time and date at job start Tue Mar 31 2020 14:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99967 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00392 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47194 * 59.99645 * 9 7 5 11 11 H 1.48498 * 109.47658 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46909 * 299.99825 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34228 * 117.00001 * 180.02562 * 16 15 13 18 18 O 1.20826 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99603 * 180.02562 * 17 16 15 20 20 H 1.08994 * 109.47301 * 60.00009 * 19 17 16 21 21 C 1.53001 * 109.46880 * 299.99284 * 19 17 16 22 22 C 1.50704 * 109.46419 * 180.02562 * 19 17 16 23 23 C 1.39868 * 126.04254 * 60.02549 * 22 19 17 24 24 N 1.30844 * 108.20243 * 179.97438 * 23 22 19 25 25 N 1.40087 * 108.20495 * 359.97438 * 24 23 22 26 26 C 1.46493 * 126.03963 * 179.97438 * 25 24 23 27 27 C 1.34953 * 107.92383 * 359.76252 * 25 24 23 28 28 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 30 30 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 31 31 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 32 32 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 33 33 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 34 34 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 35 35 H 0.97000 * 119.99819 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 37 37 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 38 38 H 1.09001 * 109.46635 * 60.01149 * 21 19 17 39 39 H 1.09007 * 109.46672 * 180.02562 * 21 19 17 40 40 H 1.08994 * 109.47746 * 300.00453 * 21 19 17 41 41 H 1.07996 * 125.90165 * 359.97438 * 23 22 19 42 42 H 1.09004 * 109.47218 * 89.97760 * 26 25 24 43 43 H 1.08998 * 109.47742 * 209.98042 * 26 25 24 44 44 H 1.08997 * 109.47138 * 329.98250 * 26 25 24 45 45 H 1.08005 * 126.12648 * 180.23672 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1266 -3.6175 9 14 5.9139 2.0973 -3.4163 10 1 6.1417 0.6407 -3.5943 11 1 6.1615 2.7973 -4.7024 12 1 6.8411 2.6205 -2.3810 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1371 1.7113 4.8163 18 8 1.7378 0.5820 4.9746 19 6 2.4431 2.5769 6.0114 20 1 1.8131 3.4659 5.9870 21 6 3.9149 2.9935 5.9759 22 6 2.1712 1.8023 7.2753 23 6 2.7890 0.6069 7.6569 24 7 2.2931 0.2408 8.8111 25 7 1.3430 1.1935 9.2012 26 6 0.5497 1.1656 10.4324 27 6 1.2911 2.1441 8.2446 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5818 1.6877 -2.0284 34 1 2.0957 3.1410 -1.1384 35 1 3.6757 3.5170 -4.4434 36 1 2.6227 0.4186 2.5298 37 1 0.9443 1.0114 2.5302 38 1 4.1119 3.5535 5.0618 39 1 4.1363 3.6192 6.8406 40 1 4.5449 2.1044 6.0003 41 1 3.5448 0.0774 7.0959 42 1 1.0863 1.6911 11.2224 43 1 -0.4093 1.6535 10.2580 44 1 0.3818 0.1315 10.7331 45 1 0.6582 3.0193 8.2503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750552150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:26 Heat of formation + Delta-G solvation = -62.773048 kcal Electronic energy + Delta-G solvation = -27100.060541 eV Core-core repulsion = 23119.110904 eV Total energy + Delta-G solvation = -3980.949637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37443 -41.53713 -40.49629 -37.61090 -36.94305 -35.56543 -34.92155 -33.55301 -31.73936 -30.78314 -30.26281 -28.39854 -27.36612 -25.68600 -24.78309 -24.11330 -22.63413 -22.01731 -20.79341 -20.21098 -18.76929 -18.60687 -18.18010 -17.73917 -17.53461 -17.30241 -16.70833 -16.31054 -16.08160 -15.93677 -15.26547 -15.14982 -14.82163 -14.63274 -14.54841 -14.11696 -13.82048 -13.80449 -13.63663 -13.55021 -13.37833 -13.27208 -13.10781 -13.05679 -12.65570 -12.63068 -12.52092 -12.49460 -12.19962 -12.02156 -11.77044 -11.70250 -11.53253 -11.35356 -10.69877 -10.63040 -10.35214 -9.52870 -9.39969 -8.21888 -6.36266 0.91392 1.18087 1.27185 1.38321 1.42368 1.49511 1.64728 1.71348 1.87511 2.36496 2.51804 3.08030 3.45799 3.55282 3.64633 3.92006 3.99108 4.01193 4.16172 4.17929 4.20927 4.34191 4.38405 4.40315 4.47886 4.59030 4.72757 4.79889 4.83947 4.89450 4.94811 4.99518 5.03545 5.11540 5.20522 5.31781 5.35751 5.37617 5.55511 5.63520 5.81141 6.05566 6.14857 6.59038 6.71350 6.72583 6.74586 7.23236 7.38335 8.85262 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.002442 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.349179 B =11465.513569 C =12065.480913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.062 3.938 16 O -0.346 6.346 17 C 0.463 3.537 18 O -0.523 6.523 19 C 0.011 3.989 20 H 0.139 0.861 21 C -0.138 4.138 22 C -0.247 4.247 23 C 0.065 3.935 24 N -0.338 5.338 25 N -0.380 5.380 26 C 0.093 3.907 27 C 0.080 3.920 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.029 0.971 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.175 0.825 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -4.318 25.992 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.015 4.015 16 O -0.262 6.262 17 C 0.307 3.693 18 O -0.411 6.411 19 C -0.009 4.009 20 H 0.157 0.843 21 C -0.195 4.195 22 C -0.259 4.259 23 C -0.121 4.121 24 N -0.160 5.160 25 N -0.161 5.161 26 C -0.047 4.047 27 C -0.067 4.067 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.192 0.808 42 H 0.108 0.892 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.426 -4.886 26.922 28.352 hybrid contribution 0.810 0.391 -1.585 1.823 sum -6.616 -4.495 25.337 26.570 Atomic orbital electron populations 1.22172 0.94355 1.03710 1.01847 1.21841 0.95538 0.81095 1.04281 1.48205 1.63682 1.15193 1.05763 1.18782 0.95542 0.91686 0.79756 1.21670 0.97815 1.32200 1.06629 0.92780 1.25849 1.02383 0.94459 0.96422 1.70041 1.37776 1.34035 1.14787 0.85476 0.79051 0.78990 0.77356 1.18528 1.20350 1.20302 1.20549 0.78282 0.86657 0.85799 1.90673 1.47030 1.20070 1.87739 1.22760 1.04368 0.92112 0.82227 1.86584 1.79023 1.45413 1.15147 1.24553 0.73237 0.87343 0.84185 1.90642 1.42971 1.20939 1.86597 1.19205 1.01234 0.96537 0.83955 0.84326 1.21767 0.91632 1.02193 1.03913 1.19529 1.06655 1.00516 0.99205 1.23744 0.99556 0.95730 0.93050 1.77314 1.07545 1.14841 1.16300 1.48802 1.31307 1.17196 1.18813 1.22210 0.95167 1.05262 0.82035 1.22879 0.99167 0.95905 0.88766 0.88519 0.92439 0.93615 0.90057 0.88590 0.95320 0.98149 0.92362 0.86939 0.86430 0.91721 0.88937 0.92597 0.80796 0.89240 0.86528 0.89566 0.76692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.09 2.88 5.93 86.38 0.51 3.39 16 3 N -0.60 -25.33 2.46 -826.17 -2.03 -27.36 16 4 C 0.26 14.15 5.16 85.63 0.44 14.59 16 5 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 9 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.50 21.40 7.75 87.66 0.68 22.08 16 14 O -0.58 -30.63 16.08 15.77 0.25 -30.38 16 15 C 0.06 1.96 4.50 71.24 0.32 2.28 16 16 O -0.35 -11.08 9.66 -45.04 -0.43 -11.51 16 17 C 0.46 12.37 7.21 71.24 0.51 12.88 16 18 O -0.52 -15.83 15.12 21.96 0.33 -15.50 16 19 C 0.01 0.20 3.19 -12.28 -0.04 0.17 16 20 H 0.14 1.91 8.11 -2.39 -0.02 1.89 16 21 C -0.14 -2.45 9.01 71.98 0.65 -1.80 16 22 C -0.25 -4.78 4.36 -20.14 -0.09 -4.87 16 23 C 0.06 1.50 10.77 85.23 0.92 2.42 16 24 N -0.34 -8.11 12.58 -57.02 -0.72 -8.82 16 25 N -0.38 -6.31 4.01 -369.57 -1.48 -7.79 16 26 C 0.09 0.65 11.47 127.77 1.47 2.11 16 27 C 0.08 1.15 11.38 83.54 0.95 2.10 16 28 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 30 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 32 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 33 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 34 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 35 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.11 3.13 7.39 -2.39 -0.02 3.12 16 37 H 0.12 3.12 7.18 -2.38 -0.02 3.10 16 38 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.05 1.04 8.02 -2.39 -0.02 1.02 16 41 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.12 0.12 8.14 -2.39 -0.02 0.11 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.22 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -83.87 387.01 6.98 -76.89 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.98 Total: 11.31 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 7.76 Total: 21.86 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -3.94 Total: -99.60 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: 0.15 Total: -57.39 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -83.87 6.98 -76.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750552150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.116 kcal (2) G-P(sol) polarization free energy of solvation -83.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds