Wall clock time and date at job start Tue Mar 31 2020 14:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 H 1.08998 * 109.47351 * 60.00141 * 7 5 4 9 9 C 1.52996 * 109.47284 * 299.99491 * 7 5 4 10 10 C 1.50710 * 109.47244 * 179.97438 * 7 5 4 11 11 C 1.39868 * 126.03523 * 59.68794 * 10 7 5 12 12 N 1.30838 * 108.19908 * 179.81764 * 11 10 7 13 13 N 1.40079 * 108.20672 * 0.44218 * 12 11 10 14 14 C 1.46502 * 126.04096 * 179.73781 * 13 12 11 15 15 C 1.34947 * 107.92707 * 359.71693 * 13 12 11 16 16 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 17 17 O 1.21280 * 120.00203 * 256.03360 * 16 2 1 18 18 N 1.34779 * 120.00030 * 76.02141 * 16 2 1 19 19 C 1.46499 * 119.99988 * 5.37097 * 18 16 2 20 20 C 1.46498 * 120.00081 * 185.37169 * 18 16 2 21 21 C 1.50702 * 109.47304 * 90.00354 * 20 18 16 22 22 H 1.08001 * 119.99689 * 359.97438 * 21 20 18 23 23 C 1.37874 * 119.99989 * 180.02562 * 21 20 18 24 24 N 1.31519 * 120.00227 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47109 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46754 * 120.00104 * 25 23 21 28 28 H 1.48498 * 109.47283 * 239.99489 * 25 23 21 29 29 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 30 30 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 31 31 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 32 32 H 1.09001 * 109.47518 * 180.02562 * 9 7 5 33 33 H 1.08998 * 109.47457 * 300.00585 * 9 7 5 34 34 H 1.09000 * 109.46939 * 60.00252 * 9 7 5 35 35 H 1.07999 * 125.90301 * 0.02562 * 11 10 7 36 36 H 1.08999 * 109.47002 * 269.97396 * 14 13 12 37 37 H 1.08995 * 109.47324 * 29.97288 * 14 13 12 38 38 H 1.08999 * 109.47402 * 149.97577 * 14 13 12 39 39 H 1.07999 * 126.13373 * 180.02562 * 15 13 12 40 40 H 1.09006 * 109.47084 * 84.81792 * 19 18 16 41 41 H 1.08994 * 109.47590 * 204.81862 * 19 18 16 42 42 H 1.09006 * 109.47202 * 324.82157 * 19 18 16 43 43 H 1.09001 * 109.47134 * 210.00388 * 20 18 16 44 44 H 1.09001 * 109.47100 * 330.00088 * 20 18 16 45 45 H 0.96998 * 120.00236 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 1 3.6872 -1.0408 3.3639 9 6 1.7224 -1.6436 4.0098 10 6 2.8614 0.4730 4.6208 11 6 1.8366 1.2826 5.1215 12 7 2.3449 2.0642 6.0395 13 7 3.7131 1.7832 6.1449 14 6 4.6600 2.4371 7.0517 15 6 4.0051 0.8034 5.2641 16 6 2.0324 -0.7104 -1.2304 17 8 2.4736 -1.8367 -1.1428 18 7 1.9913 -0.0941 -2.4284 19 6 1.5690 1.3058 -2.5178 20 6 2.3688 -0.8242 -3.6410 21 6 1.1505 -1.4918 -4.2253 22 1 0.1911 -1.3834 -3.7414 23 6 1.2610 -2.2417 -5.3770 24 7 2.4295 -2.3742 -5.9659 25 14 -0.2489 -3.0698 -6.1008 26 1 -1.4320 -2.7676 -5.2557 27 1 -0.4808 -2.5609 -7.4765 28 1 -0.0342 -4.5384 -6.1460 29 1 -0.3633 0.4158 -0.9398 30 1 -0.3633 0.6060 0.8299 31 1 -0.3633 -1.0217 0.1098 32 1 2.0846 -2.1071 4.9275 33 1 0.7535 -1.1800 4.1953 34 1 1.6193 -2.4031 3.2349 35 1 0.8035 1.2635 4.8072 36 1 5.0956 3.3055 6.5575 37 1 4.1379 2.7562 7.9537 38 1 5.4509 1.7361 7.3184 39 1 4.9772 0.3618 5.1019 40 1 2.4229 1.9558 -2.3267 41 1 1.1775 1.5043 -3.5155 42 1 0.7924 1.4992 -1.7776 43 1 2.7861 -0.1284 -4.3690 44 1 3.1136 -1.5804 -3.3928 45 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750557742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:46 Heat of formation + Delta-G solvation = -36.135919 kcal Electronic energy + Delta-G solvation = -27424.267836 eV Core-core repulsion = 23444.473271 eV Total energy + Delta-G solvation = -3979.794565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59843 -40.49334 -38.89471 -36.40110 -34.86939 -34.76103 -32.97916 -32.73033 -31.45941 -29.71047 -27.78133 -26.80982 -26.05677 -25.17340 -24.15202 -22.66383 -21.45163 -21.22416 -19.85371 -18.77704 -17.70875 -17.15186 -16.57563 -16.38119 -16.06458 -15.82945 -15.53705 -15.02963 -14.69870 -14.60270 -14.41825 -14.17538 -13.49258 -13.33264 -13.18487 -13.13629 -12.88424 -12.86887 -12.41503 -12.25917 -12.08344 -12.05221 -11.90923 -11.81664 -11.67595 -11.35033 -11.23349 -10.89889 -10.75387 -10.66047 -10.54256 -10.28300 -10.17819 -9.64003 -9.62504 -8.88907 -8.67448 -8.46012 -7.70631 -6.06648 -4.11838 1.61535 2.23429 2.27616 2.36985 2.85580 3.26536 3.28817 3.36794 3.41130 3.94637 4.18795 4.42302 4.51806 4.58589 4.74464 4.78769 4.87801 4.95052 5.00422 5.03334 5.08071 5.16419 5.18547 5.28069 5.46112 5.50751 5.56267 5.70961 5.73635 5.76124 5.86945 5.88145 6.03546 6.11127 6.26976 6.38709 6.54430 6.72033 7.00158 7.40519 7.46095 7.48038 7.83885 7.90142 8.19483 8.31067 8.84752 9.00104 9.53366 11.01467 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029284 B = 0.002404 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.930238 B =11645.641486 C =11768.008510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.101 0.899 4 O -0.325 6.325 5 C 0.462 3.538 6 O -0.504 6.504 7 C 0.001 3.999 8 H 0.113 0.887 9 C -0.140 4.140 10 C -0.227 4.227 11 C 0.082 3.918 12 N -0.300 5.300 13 N -0.379 5.379 14 C 0.103 3.897 15 C 0.068 3.932 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.597 5.597 19 C 0.074 3.926 20 C 0.245 3.755 21 C -0.528 4.528 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.179 0.821 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.176 0.824 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 8.342 23.833 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.119 0.881 4 O -0.240 6.240 5 C 0.304 3.696 6 O -0.391 6.391 7 C -0.019 4.019 8 H 0.131 0.869 9 C -0.197 4.197 10 C -0.239 4.239 11 C -0.105 4.105 12 N -0.121 5.121 13 N -0.160 5.160 14 C -0.039 4.039 15 C -0.079 4.079 16 C 0.295 3.705 17 O -0.397 6.397 18 N -0.331 5.331 19 C -0.070 4.070 20 C 0.126 3.874 21 C -0.567 4.567 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.208 1.208 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.196 0.804 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.193 0.807 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.421 9.026 24.621 26.335 hybrid contribution -0.596 -0.791 -1.263 1.605 sum 1.825 8.235 23.358 24.835 Atomic orbital electron populations 1.22147 0.92194 1.04079 1.03693 1.22633 0.95994 0.97319 0.82863 0.88145 1.86631 1.76435 1.41458 1.19486 1.23786 0.74412 0.85971 0.85425 1.90640 1.47719 1.16563 1.84165 1.19115 1.02023 0.94210 0.86560 0.86860 1.21769 0.98070 0.97474 1.02424 1.19455 0.93505 1.05666 1.05230 1.23628 1.00111 0.93155 0.93588 1.77380 0.88541 1.23920 1.22280 1.48410 1.07250 1.29306 1.31048 1.21845 0.90736 0.98166 0.93110 1.22268 0.99748 0.92641 0.93240 1.19789 0.80129 0.86826 0.83805 1.90688 1.45182 1.18419 1.85365 1.48078 1.65349 1.11900 1.07755 1.21827 0.98985 0.82682 1.03505 1.19367 0.96702 0.92070 0.79220 1.21465 0.94821 1.31283 1.09099 0.92295 1.24946 0.96266 0.96163 0.96767 1.69943 1.23154 1.40483 1.19668 0.86429 0.82803 0.79376 0.78731 1.19764 1.20962 1.20833 0.89627 0.91294 0.90651 0.91071 0.92070 0.90495 0.80356 0.90733 0.89321 0.89470 0.80729 0.93490 0.90113 0.92231 0.94675 0.93573 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.19 37.15 0.34 -2.02 16 2 C 0.07 1.19 2.14 -27.89 -0.06 1.13 16 3 H 0.10 1.59 6.31 -51.93 -0.33 1.26 16 4 O -0.32 -5.35 9.37 -45.75 -0.43 -5.78 16 5 C 0.46 6.51 7.18 36.00 0.26 6.76 16 6 O -0.50 -7.98 14.58 -18.75 -0.27 -8.26 16 7 C 0.00 0.01 3.19 -92.92 -0.30 -0.28 16 8 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 9 C -0.14 -1.24 9.02 37.16 0.34 -0.90 16 10 C -0.23 -2.41 4.37 -105.05 -0.46 -2.86 16 11 C 0.08 0.95 10.77 -17.37 -0.19 0.77 16 12 N -0.30 -3.68 12.58 30.62 0.39 -3.30 16 13 N -0.38 -3.60 4.01 -68.16 -0.27 -3.88 16 14 C 0.10 0.51 11.47 59.85 0.69 1.20 16 15 C 0.07 0.60 11.38 -17.22 -0.20 0.40 16 16 C 0.51 11.00 6.95 -10.99 -0.08 10.92 16 17 O -0.52 -13.47 16.13 -13.54 -0.22 -13.69 16 18 N -0.60 -12.81 2.86 -182.95 -0.52 -13.33 16 19 C 0.07 1.19 9.79 59.85 0.59 1.77 16 20 C 0.25 6.40 5.18 -5.19 -0.03 6.37 16 21 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 25 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.29 8.03 -51.93 -0.42 0.88 16 42 H 0.06 0.81 4.92 -51.93 -0.26 0.55 16 43 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 44 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -37.05 383.64 -6.09 -43.13 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.74 Total: -1.45 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 0.49 Total: 9.77 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.33 Total: -46.16 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.92 Total: -27.73 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.05 -6.09 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750557742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.997 kcal (2) G-P(sol) polarization free energy of solvation -37.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds